Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 1.3e-196 689.5 348 100.0
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.8e-193 679.1 348 98.9
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 2.4e-190 668.7 348 96.8
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 4.1e-161 571.6 345 84.3
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.4e-153 545.8 348 79.9
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 3.6e-149 531.9 349 78.8
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 2.8e-122 442.6 307 72.3
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 4.8e-122 441.8 334 67.1
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 6.3e-122 441.4 287 74.2
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 6.3e-122 441.4 359 64.9
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 8.3e-122 441.0 357 65.3
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 4.1e-121 438.7 317 71.3
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 7.0e-121 438.0 306 72.2
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.6e-120 436.8 356 65.2
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.0e-120 436.4 319 68.7
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 2.7e-120 436.0 338 66.0
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 7.7e-120 434.5 334 68.9
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 2.2e-119 433.0 350 65.1
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.9e-119 432.6 338 68.3
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.9e-119 432.6 356 66.3
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 3.8e-119 432.2 340 68.2
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 3.8e-119 432.2 328 68.3
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 6.5e-119 431.4 283 74.2
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 6.5e-119 431.4 326 66.6
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.1e-118 430.6 362 64.1
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.9e-118 429.9 338 67.8
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 3.2e-118 429.1 332 67.5
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 5.5e-118 428.3 347 63.7
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 7.2e-118 427.9 332 68.4
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 7.2e-118 427.9 364 63.5
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 1.2e-117 427.2 357 64.1
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 3.6e-117 425.6 352 65.3
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.6e-117 425.6 359 64.6
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.7e-117 425.2 346 65.9
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.0e-116 424.1 284 73.6
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.4e-116 423.7 358 64.8
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 3.0e-116 422.5 322 66.5
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 3.0e-116 422.5 312 69.2
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 4.0e-116 422.2 353 63.2
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 4.0e-116 422.2 325 66.5
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 4.0e-116 422.2 278 73.7
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 5.2e-116 421.8 359 61.8
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 8.8e-116 421.0 341 66.3
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.2e-115 420.6 309 68.9
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.2e-115 420.6 340 64.4
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.2e-115 420.6 331 66.5
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.5e-115 420.2 342 63.7
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.6e-115 419.5 310 68.7
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 1.7e-114 416.8 340 65.6
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 2.2e-114 416.4 311 66.9
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.8e-114 416.0 338 64.8
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 2.8e-114 416.0 359 63.0
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 2.8e-114 416.0 359 63.0
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 2.8e-114 416.0 359 63.0
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 2.8e-114 416.0 338 63.6
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 6.3e-114 414.8 359 63.2
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 6.3e-114 414.8 342 64.9
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 1.4e-113 413.7 359 63.0
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 4.1e-113 412.1 275 72.0
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.2e-112 410.6 336 64.3
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 5.9e-112 408.3 355 60.0
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 3.8e-111 405.6 289 71.3
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.1e-110 404.1 342 62.3
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 2.5e-110 402.9 263 73.4
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.6e-109 399.1 315 63.8
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 2.3e-108 396.4 307 64.8
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 3.0e-108 396.0 286 68.5
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.5e-107 393.7 304 64.5
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 2.6e-107 392.9 281 66.9
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 4.4e-107 392.1 312 63.8
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 4.4e-107 392.1 288 67.7
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 7.5e-107 391.3 350 58.9
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 1.0e-103 380.9 314 62.1
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 3.0e-103 379.4 300 62.7
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 9.5e-102 374.4 364 58.2
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 3.6e-101 372.5 360 56.9
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.8e-100 370.2 348 56.6
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.9e-97 360.1 311 59.8
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.7e-95 353.6 360 55.3
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 8.6e-95 351.3 247 70.0
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 4.3e-94 349.0 262 63.0
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 5.6e-94 348.6 289 59.5
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.2e-93 347.4 264 63.3
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.6e-93 347.1 294 59.9
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 2.8e-93 346.3 253 63.6
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 3.6e-93 345.9 308 56.2
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.8e-92 343.6 248 67.3
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 5.2e-92 342.0 249 68.3
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 6.8e-92 341.7 265 62.6
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 4.9e-90 335.5 330 58.5
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 8.3e-90 334.7 263 62.4
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 2.7e-88 329.7 241 66.8
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.3e-87 327.4 259 60.2
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.5e-86 323.9 242 66.1
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 7.3e-86 321.6 258 58.1
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 7.3e-86 321.6 258 58.1
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.6e-85 320.5 264 59.8
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 2.1e-85 320.1 281 56.2
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.1e-85 320.1 259 60.6
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 3.6e-85 319.3 264 56.1
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.6e-85 319.3 274 56.2
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 6.2e-85 318.5 266 58.6
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.1e-84 317.8 264 58.7
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 1.8e-84 317.0 264 55.7
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 2.6e-83 313.2 258 57.4
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 3.4e-83 312.8 272 55.5
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 5.8e-83 312.0 262 56.1
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 3.7e-82 309.3 264 56.1
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 3.7e-82 309.3 298 52.7
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 8.4e-82 308.1 276 54.0
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.1e-81 307.8 256 56.6
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 2.4e-81 306.6 256 56.6
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 9.2e-81 304.7 256 55.5
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.6e-80 303.9 260 56.2
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 6.0e-80 302.0 263 54.0
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 6.0e-80 302.0 263 54.0
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-78 297.0 258 53.9
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-78 297.0 258 53.9
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.9e-78 297.0 256 54.7
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 3.3e-78 296.2 261 55.9
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 1.2e-77 294.3 264 54.2
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 1.4e-76 290.8 258 57.8
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 5.2e-76 288.9 223 64.6
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 6.8e-76 288.5 234 60.3
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 9.9e-75 284.6 231 55.4
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 9.9e-75 284.6 287 51.9
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.9e-74 282.3 230 57.4
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.6e-72 277.3 259 52.5
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 7.3e-70 268.5 194 66.5
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 1.5e-67 260.8 176 70.5
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 3.2e-65 253.1 190 65.8
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.6e-64 250.8 229 52.0
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.1e-64 250.4 245 52.2
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.7e-64 250.0 255 51.4
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 4.6e-64 249.2 255 51.0
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 5.1e-63 245.7 252 52.4
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.3e-58 231.1 283 47.0
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 2.7e-56 223.4 176 60.8
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 3.5e-56 223.0 225 50.7
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 2.3e-55 220.3 403 35.7
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 7.4e-54 215.3 179 55.9
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.5e-51 207.6 176 56.2
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-51 207.2 255 47.1
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.2e-48 198.0 135 69.6
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.3e-47 193.7 166 53.6
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.7e-47 192.2 137 69.3
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.8e-45 186.0 151 57.0
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.0e-42 178.3 225 45.8
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 3.0e-39 166.8 237 38.4
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 3.3e-38 163.3 132 64.4
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 9.7e-38 161.8 199 45.2
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.7e-32 143.7 215 39.5
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 6.7e-31 139.0 87 75.9
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 5.3e-28 129.4 245 34.3
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 6.9e-28 129.0 227 39.6
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.2e-24 118.2 127 51.2
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.0e-23 115.2 110 50.0
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.4e-23 114.8 149 48.3
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 9.7e-22 108.6 181 35.9
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 4.1e-20 103.2 216 30.6
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.7e-18 97.8 93 58.1
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 8.8e-15 85.5 65 64.6
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 1.2e-14 85.1 69 62.3
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 4.8e-13 79.7 61 67.2
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 1.4e-12 78.2 66 56.1
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 2.4e-12 77.4 84 50.0
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 4.1e-12 76.6 68 60.3
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 2.7e-11 73.9 285 27.4
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 5.9e-11 72.8 58 63.8
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.1e-09 68.6 63 52.4
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 1.9e-09 67.8 64 50.0
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 3.2e-09 67.0 82 48.8


User provided reference genes

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