Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.003G072000 Gossypium raimondii HOM05D001074 ORTHO05D001188 1.7e-70 269.2 137 100.0
Gorai.001G045400 Gossypium raimondii HOM05D001074 ORTHO05D001188 7.7e-47 190.7 123 79.7
Gorai.004G093300 Gossypium raimondii HOM05D001074 ORTHO05D001188 1.0e-46 190.3 117 85.5
Gohir.D03G089400 Gossypium hirsutum HOM05D001074 ORTHO05D001188 3.1e-40 168.7 137 70.1
Gohir.D08G107420 Gossypium hirsutum HOM05D001074 ORTHO05D001188 1.5e-39 166.4 100 86.0
Gohir.D04G100550 Gossypium hirsutum HOM05D001074 ORTHO05D001188 5.5e-29 131.3 65 93.8
Gorai.009G403600 Gossypium raimondii HOM05D001074 ORTHO05D001188 2.7e-28 129.0 65 92.3
Gorai.007G242800 Gossypium raimondii HOM05D003868 ORTHO05D001188 3.6e-28 128.6 65 92.3
Gorai.004G208100 Gossypium raimondii HOM05D001074 ORTHO05D001188 6.1e-28 127.9 65 92.3
Gohir.D08G148400 Gossypium hirsutum HOM05D001074 ORTHO05D001188 1.8e-27 126.3 64 93.8
Gorai.004G154100 Gossypium raimondii HOM05D001074 ORTHO05D001188 1.8e-27 126.3 64 93.8
Gohir.A08G127000 Gossypium hirsutum HOM05D001074 ORTHO05D001188 4.4e-26 121.7 64 89.1
Gohir.A08G127066 Gossypium hirsutum HOM05D001074 ORTHO05D001188 4.4e-26 121.7 64 89.1
Thecc.01G350200 Theobroma cacao HOM05D001074 ORTHO05D001188 2.4e-24 115.9 65 81.5
Duzib138G0527 Durio zibethinus HOM05D001074 ORTHO05D001188 2.0e-23 112.8 64 81.2
QL04p059019 Quercus lobata HOM05D001074 ORTHO05D001188 2.2e-22 109.4 66 75.8
Potri.014G092300 Populus trichocarpa HOM05D001074 ORTHO05D001188 3.8e-22 108.6 63 77.8
Manes.01G251200 Manihot esculenta HOM05D001074 ORTHO05D001188 1.1e-21 107.1 65 75.4
PGR031G3047 Punica granatum HOM05D001074 ORTHO05D001188 1.1e-21 107.1 65 75.4
CSS0011311 Camellia sinensis var. sinensis HOM05D001074 ORTHO05D001188 1.5e-21 106.7 65 73.8
CSS0013614 Camellia sinensis var. sinensis HOM05D001074 ORTHO05D001188 1.5e-21 106.7 65 73.8
Duzib133G0681 Durio zibethinus HOM05D001074 ORTHO05D001188 2.5e-21 105.9 64 75.0
Sabra14G0066900 Salix brachista HOM05D001074 ORTHO05D001188 2.5e-21 105.9 63 76.2
CsaV3_3G008500 Cucumis sativus L. HOM05D001074 ORTHO05D001188 3.2e-21 105.5 66 74.2
vmacro20880 Vaccinium macrocarpon HOM05D001074 ORTHO05D001188 3.2e-21 105.5 65 72.3
COL.COLO4_06365 Corchorus olitorius HOM05D001074 ORTHO05D001188 4.2e-21 105.1 65 75.4
Manes.05G028000 Manihot esculenta HOM05D001074 ORTHO05D001188 4.2e-21 105.1 65 73.8
Dinv43877 Davidia involucrata HOM05D001074 ORTHO05D001188 5.5e-21 104.8 65 72.3
Sed0020605 Sechium edule HOM05D001074 ORTHO05D001188 9.4e-21 104.0 66 72.7
TAR374G0241 Trochodendron aralioides HOM05D001074 ORTHO05D001188 9.4e-21 104.0 65 70.8
TWI14G1380 Tripterygium wilfordii HOM05D001074 ORTHO05D001188 2.1e-20 102.8 65 73.8
Potri.002G165900 Populus trichocarpa HOM05D001074 ORTHO05D001188 2.7e-20 102.4 65 73.8
Atru.chr5.603 Acer truncatum HOM05D001074 ORTHO05D001188 3.6e-20 102.1 66 74.2
Eucgr.D02333 Eucalyptus grandis HOM05D001074 ORTHO05D001188 3.6e-20 102.1 64 71.9
Glyma.16G030200 Glycine max HOM05D001074 ORTHO05D001188 4.7e-20 101.7 65 72.3
VMungo0331G0120 Vigna mungo HOM05D001074 ORTHO05D001188 4.7e-20 101.7 65 70.8
Ciclev10021371m.g Citrus clementina HOM05D001074 ORTHO05D001188 6.1e-20 101.3 66 72.7
TWI59G0495 Tripterygium wilfordii HOM05D001074 ORTHO05D001188 6.1e-20 101.3 65 72.3
TAR375G0931 Trochodendron aralioides HOM05D001074 ORTHO05D001188 8.0e-20 100.9 65 69.2
Sed0022811 Sechium edule HOM05D001074 ORTHO05D001188 1.0e-19 100.5 73 64.4
Haze_15586 Corylus avellana HOM05D001074 ORTHO05D001188 1.4e-19 100.1 72 62.5
Haze_15592 Corylus avellana HOM05D001074 ORTHO05D001188 1.4e-19 100.1 72 62.5
Hma1.2p1_0384F.1_g140770 Hydrangea macrophylla HOM05D001074 ORTHO05D001188 1.4e-19 100.1 65 70.8
Glyma.07G062200 Glycine max HOM05D001074 ORTHO05D001188 1.8e-19 99.8 65 70.8
MD07G1129600 Malus domestica HOM05D001074 ORTHO05D001188 1.8e-19 99.8 64 73.4
Phvul.010G105800 Phaseolus vulgaris HOM05D001074 ORTHO05D001188 1.8e-19 99.8 65 69.2
TPR.G18150 Trifolium pratense HOM05D001074 ORTHO05D001188 1.8e-19 99.8 65 69.2
Migut.N01580 Erythranthe guttata HOM05D001074 ORTHO05D001188 2.3e-19 99.4 65 72.3
Lj9A594G58 Lonicera japonica HOM05D001074 ORTHO05D001188 2.3e-19 99.4 65 67.7
GSVIVG01027018001 Vitis vinifera HOM05D001074 ORTHO05D001188 2.3e-19 99.4 73 68.5
Prupe.2G179600 Prunus persica HOM05D001074 ORTHO05D001188 3.0e-19 99.0 73 65.8
arahy.Tifrunner.gnm1.ann1.HLJ790 Arachis hypogaea HOM05D001074 ORTHO05D001188 4.0e-19 98.6 67 68.7
arahy.Tifrunner.gnm1.ann1.P34XNR Arachis hypogaea HOM05D001074 ORTHO05D001188 4.0e-19 98.6 67 68.7
Cc02_g38740 Coffea canephora HOM05D001074 ORTHO05D001188 4.0e-19 98.6 65 70.8
AT2G46225 Arabidopsis thaliana HOM05D001074 ORTHO05D001188 8.8e-19 97.4 75 62.7
CANSAT56G4132 Cannabis sativa HOM05D001074 ORTHO05D001188 8.8e-19 97.4 64 67.2
CAN.G78.141 Capsicum annuum HOM05D001074 ORTHO05D001188 8.8e-19 97.4 65 70.8
CiPaw.02G037000 Carya illinoinensis HOM05D001074 ORTHO05D001188 8.8e-19 97.4 66 65.2
Psat4g157200 Pisum sativum HOM05D001074 ORTHO05D001188 8.8e-19 97.4 65 67.7
ECA236G0239 Erigeron canadensis HOM05D001074 ORTHO05D001188 1.2e-18 97.1 65 69.2
Lj3g0005915 Lotus japonicus HOM05D001074 ORTHO05D001188 1.2e-18 97.1 65 67.7
Lalb_Chr17g0338921 Lupinus albus HOM05D001074 ORTHO05D001188 1.2e-18 97.1 65 67.7
arahy.Tifrunner.gnm1.ann1.8QZ4J7 Arachis hypogaea HOM05D001074 ORTHO05D001188 1.5e-18 96.7 65 66.2
Gorai.007G281300 Gossypium raimondii HOM05D051134 ORTHO05D012314 1.5e-18 96.7 55 89.1
Medtr8g028410 Medicago truncatula HOM05D001074 ORTHO05D001188 2.0e-18 96.3 65 67.7
FAN01G0269 Fragaria x ananassa HOM05D001074 ORTHO05D001188 2.6e-18 95.9 64 68.8
FAN10G3030 Fragaria x ananassa HOM05D001074 ORTHO05D001188 2.6e-18 95.9 64 68.8
FAN10G3761 Fragaria x ananassa HOM05D001074 ORTHO05D001188 2.6e-18 95.9 64 68.8
Lalb_Chr10g0096551 Lupinus albus HOM05D001074 ORTHO05D001188 2.6e-18 95.9 65 67.7
MSTRG.4829 Avicennia marina HOM05D001074 ORTHO05D001188 3.4e-18 95.5 65 70.8
Cpa.g.sc184.14 Carica papaya HOM05D001074 ORTHO05D001188 4.4e-18 95.1 64 68.8
Medtr7g116710 Medicago truncatula HOM05D001074 ORTHO05D001188 5.7e-18 94.7 65 66.2
PSO135G0223 Papaver somniferum HOM05D001074 ORTHO05D001188 5.7e-18 94.7 68 66.2
Actinidia10085 Actinidia chinensis HOM05D001074 ORTHO05D001188 7.5e-18 94.4 72 56.9
Psat3g005360 Pisum sativum HOM05D001074 ORTHO05D001188 7.5e-18 94.4 65 66.2
Gorai.007G257700 Gossypium raimondii HOM05D051134 ORTHO05D218682 9.7e-18 94.0 53 84.9
MD01G1073200 Malus domestica HOM05D001074 ORTHO05D001188 9.7e-18 94.0 62 71.0
SalBow5G0712 Salvia bowleyana HOM05D001074 ORTHO05D001188 9.7e-18 94.0 65 67.7
TPR.G4789 Trifolium pratense HOM05D001074 ORTHO05D001188 9.7e-18 94.0 65 67.7
Ca_09480_v3 Cicer arietinum L. HOM05D001074 ORTHO05D000013 1.3e-17 93.6 65 63.1
FvH4_7g15590 Fragaria vesca HOM05D001074 ORTHO05D001188 1.3e-17 93.6 64 67.2
FAN06G1199 Fragaria x ananassa HOM05D001074 ORTHO05D001188 1.3e-17 93.6 64 67.2
FAN06G3063 Fragaria x ananassa HOM05D001074 ORTHO05D001188 1.3e-17 93.6 64 67.2
Sc23g0002450 Simmondsia chinensis HOM05D001074 ORTHO05D001188 1.3e-17 93.6 64 67.2
Sp4g28270 Schrenkiella parvula HOM05D001074 ORTHO05D001188 1.7e-17 93.2 64 68.8
Solyc01g095280.4 Solanum lycopersicum HOM05D001074 ORTHO05D001188 1.7e-17 93.2 65 67.7
Sopen01g039070 Solanum pennellii HOM05D001074 ORTHO05D001188 1.7e-17 93.2 65 67.7
PGSC0003DMG401000076 Solanum tuberosum HOM05D001074 ORTHO05D001188 1.7e-17 93.2 65 67.7
AL4G45490 Arabidopsis lyrata HOM05D001074 ORTHO05D001188 2.2e-17 92.8 64 68.8
Carub.0004s2891 Capsella rubella HOM05D001074 ORTHO05D001188 2.2e-17 92.8 64 68.8
CARHR141510 Cardamine hirsuta HOM05D001074 ORTHO05D001188 2.2e-17 92.8 64 68.8
Thhalv10001562m.g Eutrema salsugineum HOM05D001074 ORTHO05D001188 2.2e-17 92.8 64 68.8
FAN03G2908 Fragaria x ananassa HOM05D001074 ORTHO05D001188 2.2e-17 92.8 64 65.6
CiPaw.01G069400 Carya illinoinensis HOM05D001074 ORTHO05D001188 2.8e-17 92.4 67 65.7
AUR62004425 Chenopodium quinoa HOM05D001074 ORTHO05D001188 2.8e-17 92.4 65 64.6
HanXRQChr06g0166951 Helianthus annuus HOM05D001074 ORTHO05D001188 2.8e-17 92.4 58 70.7
Peaxi162Scf01254g00031 Petunia axillaris HOM05D001074 ORTHO05D001188 2.8e-17 92.4 65 66.2
BraA05t19153Z Brassica rapa HOM05D001074 ORTHO05D001188 3.7e-17 92.0 66 65.2
Hund16680 Selenicereus undatus HOM05D001074 ORTHO05D001188 3.7e-17 92.0 65 69.2
PSO384G3895 Papaver somniferum HOM05D001074 ORTHO05D001188 4.8e-17 91.7 68 66.2
Phvul.006G108900 Phaseolus vulgaris HOM05D001074 ORTHO05D001188 4.8e-17 91.7 65 64.6
RcHm_v2.0_Chr1g0358271 Rosa chinensis HOM05D001074 ORTHO05D001188 4.8e-17 91.7 58 72.4
TAR629G1652 Trochodendron aralioides HOM05D001074 ORTHO05D001188 4.8e-17 91.7 65 64.6
Aa31LG1G27610 Aethionema arabicum HOM05D001074 ORTHO05D001188 6.3e-17 91.3 64 67.2
Aqoxy7G00223 Aquilegia oxysepala HOM05D001074 ORTHO05D001188 6.3e-17 91.3 65 64.6
Nitab4.5_0004748g0040 Nicotiana tabacum HOM05D001074 ORTHO05D001188 6.3e-17 91.3 65 66.2
vmacro13216 Vaccinium macrocarpon HOM05D001074 ORTHO05D001188 6.3e-17 91.3 65 63.1
MSTRG.17307 Avicennia marina HOM05D001074 ORTHO05D001188 8.3e-17 90.9 66 63.6
FAN01G2411 Fragaria x ananassa HOM05D001074 ORTHO05D001188 8.3e-17 90.9 61 67.2
Gohir.D12G113000 Gossypium hirsutum HOM05D001074 ORTHO05D001188 8.3e-17 90.9 63 66.7
Gorai.008G122600 Gossypium raimondii HOM05D001074 ORTHO05D001188 8.3e-17 90.9 63 66.7
ECA240G2888 Erigeron canadensis HOM05D001074 ORTHO05D001188 1.1e-16 90.5 55 74.5
unitig_578.g16486 Utricularia gibba HOM05D001074 ORTHO05D001188 1.4e-16 90.1 52 76.9
DCAR_006955 Daucus carota HOM05D001074 ORTHO05D001188 1.8e-16 89.7 52 76.9
Gohir.A12G110000 Gossypium hirsutum HOM05D001074 ORTHO05D001188 1.8e-16 89.7 63 68.3
Nitab4.5_0000305g0390 Nicotiana tabacum HOM05D001074 ORTHO05D001188 1.8e-16 89.7 65 66.2
THA.LOC104817326 Tarenaya hassleriana HOM05D001074 ORTHO05D001188 1.8e-16 89.7 64 65.6
BcaC02g12508 Brassica carinata HOM05D001074 ORTHO05D001188 2.4e-16 89.4 64 65.6
BcaC02g12703 Brassica carinata HOM05D001074 ORTHO05D001188 2.4e-16 89.4 64 65.6
A05p01580 Brassica napus HOM05D001074 ORTHO05D001188 2.4e-16 89.4 64 65.6
C04p01800 Brassica napus HOM05D001074 ORTHO05D001188 2.4e-16 89.4 64 65.6
Glyma.19G251600 Glycine max HOM05D001074 ORTHO05D001188 7.0e-16 87.8 65 63.1
HanXRQChr04g0120631 Helianthus annuus HOM05D001074 ORTHO05D001188 7.0e-16 87.8 58 65.5
MELO3C006071.2 Cucumis melo HOM05D001074 ORTHO05D001188 1.2e-15 87.0 80 57.5
Lj1g0022745 Lotus japonicus HOM05D001074 ORTHO05D001188 1.2e-15 87.0 66 62.1
EL10Ac1g00338 Beta vulgaris HOM05D001074 ORTHO05D001188 1.6e-15 86.7 65 60.0
MBI06_g38101_MAGBIO Magnolia biondii HOM05D001074 ORTHO05D001188 1.6e-15 86.7 58 67.2
Lsat_1_v5_gn_3_138481 Lactuca sativa HOM05D001074 ORTHO05D001188 2.0e-15 86.3 67 64.2
arahy.Tifrunner.gnm1.ann1.46HUUA Arachis hypogaea HOM05D001074 ORTHO05D001188 3.5e-15 85.5 77 54.5
SGA_v2.0_scaffold11G05699 Striga asiatica HOM05D001074 ORTHO05D001188 3.5e-15 85.5 65 58.5
SGA_v2.0_scaffold95G28799 Striga asiatica HOM05D001074 ORTHO05D001188 3.5e-15 85.5 52 69.2
Nn1g01745 Nelumbo nucifera HOM05D001074 ORTHO05D001188 5.9e-15 84.7 66 65.2
MSTRG.28238 Avicennia marina HOM05D001074 ORTHO05D001188 7.7e-15 84.3 84 54.8
BraA03t11769Z Brassica rapa HOM05D001074 ORTHO05D001188 7.7e-15 84.3 83 54.2
Migut.B01813 Erythranthe guttata HOM05D001074 ORTHO05D001188 1.0e-14 84.0 64 70.3
Glyma.03G254100 Glycine max HOM05D001074 ORTHO05D001188 1.3e-14 83.6 65 61.5
Nn7g37325 Nelumbo nucifera HOM05D001074 ORTHO05D001188 1.7e-14 83.2 65 60.0
A03p25520 Brassica napus HOM05D001074 ORTHO05D001188 3.8e-14 82.0 65 63.1
Gohir.A07G140650 Gossypium hirsutum HOM05D001074 ORTHO05D001188 3.8e-14 82.0 58 63.8
Gohir.D07G146000 Gossypium hirsutum HOM05D001074 ORTHO05D001188 3.8e-14 82.0 58 62.1
BcaB01g03234 Brassica carinata HOM05D001074 ORTHO05D001188 1.1e-13 80.5 65 61.5
CDE08G1631 Ceratophyllum demersum HOM05D001074 ORTHO05D001188 1.1e-13 80.5 58 65.5
Gorai.001G158200 Gossypium raimondii HOM05D001074 ORTHO05D001188 1.1e-13 80.5 57 61.4
PSO063G2182 Papaver somniferum HOM05D001074 ORTHO05D001188 1.1e-13 80.5 64 57.8
BcaC01g05090 Brassica carinata HOM05D001074 ORTHO05D001188 1.5e-13 80.1 65 61.5
C03p30440 Brassica napus HOM05D001074 ORTHO05D001188 5.5e-13 78.2 65 61.5
BolC3t15392H Brassica oleracea HOM05D001074 ORTHO05D001188 5.5e-13 78.2 65 61.5
PSO170G0993 Papaver somniferum HOM05D001074 ORTHO05D001188 2.1e-12 76.3 65 55.4
CSS0011363 Camellia sinensis var. sinensis HOM05D001074 ORTHO05D001188 2.6e-10 69.3 39 76.9
Gohir.D10G185350 Gossypium hirsutum HOM05D005085 ORTHO05D006135 3.4e-10 68.9 46 76.1
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.4e-10 68.9 34 88.2
Gorai.011G207800 Gossypium raimondii HOM05D005085 ORTHO05D006135 3.4e-10 68.9 46 76.1
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 5.7e-10 68.2 34 88.2
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.8e-10 67.4 34 88.2
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.7e-09 66.6 34 85.3
ClCG05G001160 Citrullus lanatus HOM05D001074 ORTHO05D001188 3.7e-09 65.5 34 82.4
Thecc.01G023200 Theobroma cacao HOM05D000706 ORTHO05D001633 4.8e-09 65.1 48 72.9
ATR1127G035 Amborella trichopoda HOM05D001074 ORTHO05D001188 1.4e-08 63.5 59 52.5
Gohir.D09G069933 Gossypium hirsutum HOM05D001444 ORTHO05D012314 2.4e-08 62.8 28 100.0
Gorai.006G084200 Gossypium raimondii HOM05D001444 ORTHO05D012314 2.4e-08 62.8 28 100.0
Os01g0622700 Oryza sativa ssp. japonica HOM05D001074 ORTHO05D001188 2.4e-08 62.8 49 53.1
HPP92_023154 Vanilla planifolia HOM05D001074 ORTHO05D001188 5.4e-08 61.6 65 44.6
Lsat_1_v5_gn_7_2540 Lactuca sativa HOM05D001074 ORTHO05D001188 1.6e-07 60.1 34 73.5
BcaC02g12505 Brassica carinata HOM05D001074 ORTHO05D001188 4.5e-07 58.5 34 73.5
TPR.G11254 Trifolium pratense HOM05D001074 ORTHO05D001188 1.0e-06 57.4 34 76.5
unitig_8.g4991 Utricularia gibba HOM05D001074 ORTHO05D001188 2.3e-06 56.2 34 64.7
HanXRQChr02g0038221 Helianthus annuus HOM05D001074 ORTHO05D001188 6.6e-06 54.7 39 56.4
SEGI_34297 Sequoiadendron giganteum HOM05D001074 ORTHO05D001188 8.6e-06 54.3 34 67.6


User provided reference genes

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