Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.0e-85 320.1 169 100.0
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 3.1e-82 308.5 169 97.0
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.7e-80 302.8 169 95.3
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.4e-79 299.7 164 97.6
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 7.2e-79 297.4 164 97.0
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 9.4e-79 297.0 162 97.5
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 1.7e-67 259.6 164 84.1
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 1.3e-64 250.0 160 82.5
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 3.8e-64 248.4 164 86.0
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 4.8e-59 231.5 164 78.0
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.4e-58 229.9 148 83.8
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 3.5e-57 225.3 164 75.0
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 1.7e-56 223.0 166 74.7
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 3.8e-56 221.9 160 75.6
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 3.8e-56 221.9 172 75.0
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 4.2e-55 218.4 162 75.3
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 7.2e-55 217.6 165 73.9
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 2.7e-54 215.7 164 75.0
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.0e-53 213.8 163 73.0
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 1.0e-53 213.8 160 74.4
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 1.2e-52 210.3 161 73.9
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 5.7e-52 208.0 145 79.3
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 1.7e-51 206.5 168 70.2
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 3.7e-51 205.3 195 64.1
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 4.8e-51 204.9 158 72.2
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 1.1e-50 203.8 164 72.0
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 5.3e-50 201.4 159 71.7
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 9.1e-50 200.7 159 71.7
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 1.2e-49 200.3 158 69.6
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 1.6e-49 199.9 158 69.6
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 1.6e-49 199.9 161 71.4
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 2.0e-49 199.5 146 71.9
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 2.7e-49 199.1 163 69.3
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 3.5e-49 198.7 145 77.2
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.9e-47 193.0 167 68.9
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 1.9e-47 193.0 156 71.2
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 1.9e-47 193.0 134 79.9
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 1.9e-47 193.0 162 71.0
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.5e-47 192.6 167 68.3
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 2.5e-47 192.6 161 68.9
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 2.5e-47 192.6 133 80.5
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 2.5e-47 192.6 166 68.7
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 3.2e-47 192.2 170 67.1
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 4.2e-47 191.8 156 67.9
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 7.2e-47 191.0 140 73.6
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 9.4e-47 190.7 167 68.3
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 9.4e-47 190.7 167 68.3
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 1.2e-46 190.3 158 69.0
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 4.7e-46 188.3 154 69.5
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 6.1e-46 188.0 145 71.7
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 1.0e-45 187.2 119 85.7
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 2.3e-45 186.0 155 67.7
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 3.0e-45 185.7 145 71.0
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 3.0e-45 185.7 161 67.7
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 8.8e-45 184.1 116 83.6
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 1.2e-44 183.7 114 86.8
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 1.5e-44 183.3 144 72.9
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 1.5e-44 183.3 157 63.1
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 2.0e-44 183.0 143 70.6
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 2.6e-44 182.6 145 70.3
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 3.4e-44 182.2 163 67.5
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 4.4e-44 181.8 113 85.0
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 4.4e-44 181.8 159 66.7
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 5.7e-44 181.4 115 83.5
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 9.8e-44 180.6 141 69.5
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 1.3e-43 180.3 111 86.5
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 1.3e-43 180.3 157 65.6
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 1.7e-43 179.9 121 79.3
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 2.8e-43 179.1 159 66.0
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 4.8e-43 178.3 162 59.9
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 4.8e-43 178.3 144 71.5
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 4.8e-43 178.3 115 80.0
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 4.8e-43 178.3 161 65.2
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 6.3e-43 177.9 131 75.6
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.4e-42 176.0 128 77.3
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 3.1e-42 175.6 126 77.0
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 3.1e-42 175.6 118 80.5
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 4.1e-42 175.3 107 84.1
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 5.4e-42 174.9 130 74.6
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 9.1e-42 174.1 127 70.9
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 1.2e-41 173.7 159 60.4
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 2.0e-41 172.9 152 64.5
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 2.0e-41 172.9 130 70.8
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 3.5e-41 172.2 156 63.5
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 1.0e-40 170.6 121 74.4
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 1.0e-40 170.6 117 77.8
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 1.7e-40 169.9 107 80.4
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 1.7e-40 169.9 107 80.4
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 1.7e-40 169.9 107 80.4
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 1.7e-40 169.9 107 80.4
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 1.7e-40 169.9 107 82.2
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 5.0e-40 168.3 136 71.3
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 6.6e-40 167.9 131 68.7
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 6.6e-40 167.9 109 78.9
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 6.6e-40 167.9 122 73.0
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 4.2e-39 165.2 106 79.2
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 7.2e-39 164.5 106 78.3
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 7.2e-39 164.5 106 78.3
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 6.1e-38 161.4 113 76.1
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 4.0e-37 158.7 140 62.9
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 5.7e-36 154.8 131 64.1
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 2.2e-35 152.9 146 61.0
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 4.9e-35 151.8 114 68.4
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 4.9e-35 151.8 114 68.4
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 6.6e-32 141.4 120 64.2
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 2.1e-30 136.3 89 83.1
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 2.3e-29 132.9 119 59.7
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 2.3e-29 132.9 86 83.7
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 8.9e-29 131.0 131 57.3
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 5.8e-28 128.3 86 79.1
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 1.6e-25 120.2 136 48.5
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 3.4e-20 102.4 120 51.7
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 9.2e-18 94.4 53 86.8
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 3.9e-16 89.0 125 46.4
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 9.5e-15 84.3 104 46.2


User provided reference genes

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