Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 2.2e-230 802.4 478 100.0
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 4.0e-224 781.6 479 95.2
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 6.7e-219 764.2 443 98.2
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 3.2e-197 692.2 480 79.8
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 4.7e-196 688.3 493 81.3
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.8e-195 686.4 480 82.1
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 2.3e-195 686.0 485 82.7
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 3.0e-195 685.6 479 82.5
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 7.4e-186 654.4 444 85.1
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 4.4e-178 628.6 481 74.2
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 3.1e-176 622.5 484 77.1
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 2.7e-175 619.4 517 71.8
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 5.9e-175 618.2 482 75.5
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 6.1e-172 608.2 485 75.1
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 8.0e-172 607.8 485 74.8
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 4.0e-171 605.5 483 74.1
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 9.8e-170 600.9 483 74.7
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 5.4e-168 595.1 483 74.7
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 3.5e-167 592.4 485 70.9
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 7.7e-167 591.3 453 76.2
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 6.5e-166 588.2 484 74.4
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 8.6e-166 587.8 483 71.2
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 8.6e-166 587.8 451 73.8
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 1.5e-165 587.0 485 72.8
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 4.2e-165 585.5 485 71.8
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 7.2e-165 584.7 519 68.0
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 3.6e-164 582.4 482 71.2
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 3.4e-162 575.9 486 72.8
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 9.8e-162 574.3 509 66.4
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.7e-161 573.5 497 69.6
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 2.8e-161 572.8 484 75.2
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 1.4e-160 570.5 482 73.7
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 4.1e-160 568.9 497 68.8
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 5.4e-160 568.5 487 74.1
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 1.2e-159 567.4 450 73.6
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 2.0e-159 566.6 483 73.9
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 5.9e-159 565.1 485 69.7
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 7.8e-159 564.7 488 70.7
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 1.0e-158 564.3 486 71.6
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 2.9e-158 562.8 502 68.1
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 2.9e-158 562.8 450 71.6
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 2.5e-157 559.7 484 69.8
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 3.3e-157 559.3 450 71.6
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 5.6e-157 558.5 506 66.8
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 7.3e-157 558.1 486 73.7
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 1.2e-156 557.4 513 72.9
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 1.2e-156 557.4 486 69.1
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 8.0e-156 554.7 484 71.7
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 2.3e-155 553.1 478 73.4
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 2.6e-154 549.7 481 71.9
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 1.7e-153 547.0 486 68.7
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 3.7e-153 545.8 484 70.5
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 1.1e-152 544.3 484 69.8
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 3.2e-152 542.7 487 67.4
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 4.1e-152 542.3 486 67.5
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 1.2e-151 540.8 448 72.3
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 2.0e-151 540.0 449 71.5
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 4.6e-151 538.9 500 69.0
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 6.0e-151 538.5 483 68.1
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 7.8e-151 538.1 450 71.8
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 7.8e-151 538.1 483 68.1
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 1.0e-150 537.7 482 73.4
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 1.0e-150 537.7 479 67.0
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 5.0e-150 535.4 499 64.3
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 1.9e-149 533.5 487 69.2
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 1.9e-149 533.5 485 67.6
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 3.3e-149 532.7 484 68.0
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 4.3e-149 532.3 485 68.9
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 2.1e-148 530.0 485 64.9
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 3.6e-148 529.3 483 67.1
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 2.3e-147 526.6 448 71.7
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 6.8e-147 525.0 485 67.0
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 2.2e-145 520.0 497 63.2
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 2.4e-144 516.5 452 68.4
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 4.6e-143 512.3 484 65.7
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 3.9e-142 509.2 508 62.0
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 6.2e-140 501.9 449 66.6
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 6.4e-137 491.9 374 74.1
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 2.3e-134 483.4 373 74.0
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.5e-133 480.7 493 60.4
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 2.5e-133 479.9 483 62.5
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 2.8e-132 476.5 374 74.6
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 4.0e-131 472.6 388 71.6
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.5e-130 470.7 449 64.1
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 2.0e-130 470.3 375 72.8
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 1.6e-127 460.7 482 60.8
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 8.7e-126 454.9 479 57.6
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 4.7e-124 449.1 473 60.7
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 6.4e-121 438.7 391 68.5
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 4.8e-116 422.5 512 56.2
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 1.6e-108 397.5 383 68.1
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 6.2e-108 395.6 450 60.0
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 3.1e-107 393.3 376 66.0
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 5.1e-102 375.9 344 70.1
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 3.7e-100 369.8 320 70.0
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 1.8e-99 367.5 307 73.6
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 4.0e-99 366.3 482 49.0
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 2.5e-96 357.1 467 50.7
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 1.2e-95 354.8 342 66.7
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 3.5e-95 353.2 311 73.3
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 3.3e-93 346.7 350 68.3
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 1.0e-89 335.1 477 48.8
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 5.0e-89 332.8 375 62.7
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 7.2e-88 328.9 272 72.4
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 2.5e-80 303.9 462 46.1
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 2.5e-72 277.3 324 60.5
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 5.7e-69 266.2 234 70.5
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 3.7e-68 263.5 241 67.6
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 1.4e-67 261.5 234 69.7
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 4.5e-66 256.5 331 61.6
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 2.0e-61 241.1 273 58.6
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.1e-59 233.4 348 50.3
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 5.0e-57 226.5 154 71.4
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.5e-56 224.9 319 55.8
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 9.4e-56 222.2 243 55.6
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 3.6e-55 220.3 128 83.6
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 8.0e-55 219.2 128 83.6
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 2.5e-48 197.6 128 78.1
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 1.3e-44 185.3 459 40.5
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 3.9e-41 173.7 471 33.3
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 5.2e-38 163.3 84 89.3
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 1.2e-23 115.5 158 48.7
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 6.2e-23 113.2 72 75.0
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 1.1e-22 112.5 66 83.3
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.0e-21 108.2 66 78.8
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 4.4e-21 107.1 113 60.2
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 5.8e-21 106.7 110 60.0
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 2.4e-19 101.3 114 54.4
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 4.6e-18 97.1 64 76.6
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 4.6e-18 97.1 142 47.2
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.5e-16 92.0 382 30.4
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 3.1e-14 84.3 77 68.8
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 2.0e-13 81.6 85 61.2
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 9.9e-13 79.3 84 58.3
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 1.3e-12 79.0 50 76.0
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 9.6e-08 62.8 76 53.9
ECA233G0248 Erigeron canadensis HOM05D000047 ORTHO05D006606 1.1e-06 59.3 111 59.5


User provided reference genes

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