Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 0.0e+00 1306.2 677 100.0
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 0.0e+00 1280.8 677 98.2
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 0.0e+00 1273.1 677 97.8
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 0.0e+00 1114.8 694 85.9
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 0.0e+00 1078.9 696 82.9
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 0.0e+00 1078.5 700 82.4
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 1.9e-308 1062.0 700 82.3
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 9.6e-300 1033.1 700 80.1
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 3.8e-296 1021.1 700 79.3
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 1.5e-268 929.5 718 69.5
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 3.7e-267 924.9 708 70.1
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 1.9e-263 912.5 729 69.0
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 1.9e-263 912.5 703 71.4
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 1.2e-262 909.8 729 68.3
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 1.2e-262 909.8 725 68.0
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 1.6e-262 909.4 725 68.0
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 2.8e-259 898.7 707 69.0
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 6.9e-258 894.0 718 68.7
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 9.1e-258 893.6 708 68.8
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 4.5e-257 891.3 706 68.0
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 1.0e-256 890.2 717 67.8
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 1.0e-256 890.2 705 68.7
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 5.0e-256 887.9 709 67.4
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 1.1e-255 886.7 716 68.4
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 1.1e-255 886.7 722 68.7
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 5.5e-255 884.4 703 69.7
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 7.2e-255 884.0 723 68.0
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 2.7e-254 882.1 705 67.5
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 1.4e-253 879.8 707 67.5
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 8.8e-253 877.1 706 67.3
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 1.5e-252 876.3 703 67.4
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 2.6e-252 875.5 712 67.3
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 4.4e-252 874.8 707 67.5
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 2.8e-251 872.1 709 68.8
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 4.8e-251 871.3 726 66.0
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 2.0e-249 865.9 717 66.7
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 5.9e-249 864.4 714 68.2
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 5.9e-249 864.4 721 66.3
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 7.7e-249 864.0 695 67.6
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.2e-248 862.4 714 67.8
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 3.8e-248 861.7 714 67.8
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 5.0e-248 861.3 714 68.1
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.1e-247 860.1 714 67.9
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 2.5e-247 859.0 708 67.8
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 3.2e-247 858.6 717 66.5
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 3.9e-245 851.7 689 69.4
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 5.2e-245 851.3 721 64.4
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 9.7e-244 847.0 718 65.7
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 1.3e-243 846.7 703 65.7
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 1.1e-242 843.6 724 64.6
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 1.4e-242 843.2 732 64.8
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 6.1e-238 827.8 794 59.2
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 5.2e-237 824.7 698 64.9
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 6.3e-235 817.8 709 64.9
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 3.5e-233 812.0 717 62.3
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 2.9e-232 808.9 635 68.7
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 6.1e-230 801.2 708 64.8
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 3.0e-229 798.9 715 62.2
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 1.2e-228 797.0 692 64.5
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 5.7e-228 794.7 717 61.6
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 5.4e-226 788.1 702 64.4
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 2.7e-225 785.8 710 61.8
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 1.7e-224 783.1 728 61.7
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 2.3e-224 782.7 725 62.3
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 8.6e-224 780.8 710 61.3
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 3.2e-223 778.9 718 62.0
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 5.5e-223 778.1 675 64.3
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 2.8e-222 775.8 724 61.6
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 6.1e-222 774.6 713 62.0
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 1.8e-221 773.1 717 61.8
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 1.8e-221 773.1 702 62.8
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 1.2e-220 770.4 707 61.4
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 1.2e-220 770.4 689 62.4
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 9.8e-220 767.3 719 61.1
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 1.4e-218 763.5 703 61.6
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 3.1e-218 762.3 593 70.3
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 2.0e-217 759.6 711 61.6
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 2.3e-216 756.1 679 62.4
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 3.8e-216 755.4 728 60.6
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 5.0e-216 755.0 939 49.9
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 2.1e-214 749.6 751 57.5
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 4.4e-212 741.9 710 60.3
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 3.2e-210 735.7 701 60.6
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 9.2e-210 734.2 705 59.7
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 3.0e-208 729.2 702 60.4
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 5.0e-208 728.4 701 60.2
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 6.6e-208 728.0 701 60.1
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 1.2e-206 723.8 923 49.3
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 2.8e-206 722.6 702 59.4
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 2.8e-206 722.6 697 59.4
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 6.2e-206 721.5 706 58.2
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 1.1e-205 720.7 711 56.8
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 3.4e-204 715.7 725 58.2
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 2.2e-195 686.4 718 54.2
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 9.2e-194 681.0 544 70.2
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 9.2e-194 681.0 714 55.0
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 1.7e-192 676.8 724 56.1
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 2.1e-190 669.8 607 60.8
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 2.4e-189 666.4 603 60.0
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 1.5e-188 663.7 585 63.2
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 2.3e-184 649.8 562 65.5
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 2.6e-172 609.8 529 62.8
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 1.0e-168 597.8 583 58.3
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 2.3e-160 570.1 576 56.9
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 5.1e-152 542.3 510 61.2
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 4.7e-129 466.1 762 40.8
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 4.1e-125 453.0 780 38.8
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 5.0e-115 419.5 677 39.1
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 1.6e-105 387.9 461 53.8
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 6.1e-97 359.4 263 71.5
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 7.5e-95 352.4 291 66.3
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 2.1e-89 334.3 430 50.2
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 1.4e-72 278.5 437 43.2
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 1.7e-67 261.5 296 55.4
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 8.1e-57 226.1 182 65.9
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 2.4e-53 214.5 197 59.4
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 1.0e-51 209.1 269 49.1
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 2.4e-48 198.0 362 42.0
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 2.6e-47 194.5 153 68.0
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 6.5e-38 163.3 156 56.4
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 7.1e-37 159.8 97 82.5
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 2.7e-36 157.9 133 65.4
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 2.7e-36 157.9 126 67.5
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 2.5e-34 151.4 107 76.6
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 2.9e-30 137.9 126 57.1
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 6.9e-24 116.7 138 52.9
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 1.3e-22 112.5 151 49.0
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 4.8e-17 94.0 114 48.2
unitig_736.g22376 Utricularia gibba HOM05D005929 ORTHO05D425945 1.2e-07 62.8 71 52.1
MBI16_g22817_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 5.0e-06 57.4 35 80.0


User provided reference genes

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