Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.003G018500 Gossypium raimondii HOM05D003814 ORTHO05D004399 6.0e-230 800.4 387 100.0
Gohir.D03G018133 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.3e-229 799.3 387 99.7
Gohir.A02G162300 Gossypium hirsutum HOM05D003814 ORTHO05D004399 4.9e-192 674.5 382 86.9
Gohir.D04G023700 Gossypium hirsutum HOM05D003814 ORTHO05D004399 4.7e-134 481.9 386 65.8
Gorai.012G033100 Gossypium raimondii HOM05D003814 ORTHO05D004399 1.4e-133 480.3 386 65.8
Gohir.D04G029200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 2.4e-130 469.5 386 65.3
Gohir.A05G386550 Gossypium hirsutum HOM05D003814 ORTHO05D004399 8.9e-125 451.1 371 65.2
Gohir.D04G024036 Gossypium hirsutum HOM05D003814 ORTHO05D004399 5.0e-120 435.3 389 62.2
Gohir.D07G013832 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.7e-115 420.2 400 58.8
Gorai.001G014600 Gossypium raimondii HOM05D003814 ORTHO05D004399 4.1e-114 415.6 400 58.2
Gohir.A07G014200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 2.7e-113 412.9 407 57.5
Gohir.A07G014250 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.7e-112 410.2 408 56.9
Gorai.003G018600 Gossypium raimondii HOM05D003814 ORTHO05D004399 7.8e-89 331.6 386 52.3
Thecc.09G080800 Theobroma cacao HOM05D003814 ORTHO05D004399 2.2e-67 260.4 388 40.2
Duzib187G0024 Durio zibethinus HOM05D003814 ORTHO05D004399 1.4e-66 257.7 389 40.1
Duzib168G0557 Durio zibethinus HOM05D003814 ORTHO05D004399 1.3e-64 251.1 387 41.9
Gohir.D03G018166 Gossypium hirsutum HOM05D003814 ORTHO05D004399 2.7e-57 226.9 292 49.7
Potri.010G224400 Populus trichocarpa HOM05D003814 ORTHO05D004399 4.4e-47 193.0 385 34.8
Potri.008G038000 Populus trichocarpa HOM05D003814 ORTHO05D004399 2.4e-45 187.2 374 33.2
Ciclev10007128m.g Citrus clementina HOM05D003814 ORTHO05D004399 2.0e-44 184.1 393 32.3
TWI53G0525 Tripterygium wilfordii HOM05D003814 ORTHO05D004399 1.1e-39 168.3 388 31.7
FAN26G3410 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.0e-39 167.5 383 30.8
FAN26G2103 Fragaria x ananassa HOM05D003814 ORTHO05D004399 5.7e-39 166.0 383 30.5
Potri.014G187100 Populus trichocarpa HOM05D003814 ORTHO05D004399 6.3e-38 162.5 364 30.5
Dinv25578 Davidia involucrata HOM05D003814 ORTHO05D004399 1.4e-37 161.4 385 32.2
Potri.017G066400 Populus trichocarpa HOM05D003814 ORTHO05D004399 9.1e-37 158.7 364 31.0
COL.COLO4_18129 Corchorus olitorius HOM05D003814 ORTHO05D004399 2.6e-36 157.1 376 31.6
FvH4_1g08170 Fragaria vesca HOM05D003814 ORTHO05D004399 7.7e-36 155.6 383 30.0
FAN19G0873 Fragaria x ananassa HOM05D003814 ORTHO05D004399 7.7e-36 155.6 383 30.0
Potri.008G214000 Populus trichocarpa HOM05D003814 ORTHO05D004399 6.5e-35 152.5 358 31.0
TAR636G0432 Trochodendron aralioides HOM05D003814 ORTHO05D004399 6.5e-35 152.5 380 29.2
Potri.007G037500 Populus trichocarpa HOM05D003814 ORTHO05D004399 8.5e-35 152.1 366 31.1
RcHm_v2.0_Chr2g0094241 Rosa chinensis HOM05D003814 ORTHO05D004399 4.2e-34 149.8 385 30.1
TAR624G1373 Trochodendron aralioides HOM05D003814 ORTHO05D004399 4.2e-34 149.8 377 28.9
CiPaw.01G298600 Carya illinoinensis HOM05D003814 ORTHO05D004399 9.4e-34 148.7 386 31.6
TAR178G0001 Trochodendron aralioides HOM05D003814 ORTHO05D004399 9.4e-34 148.7 377 28.9
Haze_11118 Corylus avellana HOM05D003814 ORTHO05D004399 2.1e-33 147.5 361 31.9
FAN23G2856 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.1e-33 147.5 338 31.4
DCAR_028786 Daucus carota HOM05D003814 ORTHO05D004399 8.0e-33 145.6 390 29.2
Hma1.2p1_0169F.1_g074710 Hydrangea macrophylla HOM05D003814 ORTHO05D004399 5.2e-32 142.9 385 28.3
Haze_08071 Corylus avellana HOM05D003814 ORTHO05D004399 1.2e-31 141.7 312 31.7
Manes.04G143500 Manihot esculenta HOM05D003814 ORTHO05D004399 1.5e-31 141.4 378 29.1
Peaxi162Scf00928g00024 Petunia axillaris HOM05D003814 ORTHO05D004399 2.6e-31 140.6 400 28.5
QL05p073999 Quercus lobata HOM05D003814 ORTHO05D004399 3.7e-30 136.7 354 29.1
Thecc.06G118300 Theobroma cacao HOM05D003814 ORTHO05D004399 4.8e-30 136.3 374 28.1
Cc08_g07160 Coffea canephora HOM05D003814 ORTHO05D004399 1.8e-29 134.4 387 28.2
Lsat_1_v5_gn_6_92600 Lactuca sativa HOM05D003814 ORTHO05D004399 3.1e-29 133.7 388 26.8
FAN28G0169 Fragaria x ananassa HOM05D003814 ORTHO05D004399 9.1e-29 132.1 293 31.7
Nitab4.5_0000073g0260 Nicotiana tabacum HOM05D003814 ORTHO05D004399 1.2e-28 131.7 401 27.9
Potri.006G167500 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.2e-28 131.7 316 29.1
Sabra16G0039400 Salix brachista HOM05D003814 ORTHO05D004399 1.2e-28 131.7 310 31.0
TAR374G0716 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.0e-28 131.0 364 27.7
Sabra10G0173600 Salix brachista HOM05D001546 ORTHO05D004399 2.7e-28 130.6 332 30.1
TAR626G0622 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.7e-28 130.6 364 27.7
Sp1g34730 Schrenkiella parvula HOM05D003814 ORTHO05D004399 2.5e-26 124.0 314 29.0
SHI03045 Sapria himalayana HOM05D003814 ORTHO05D004399 4.2e-26 123.2 386 28.2
Lsat_1_v5_gn_1_71940 Lactuca sativa HOM05D003814 ORTHO05D004399 5.5e-26 122.9 386 27.2
COL.COLO4_18131 Corchorus olitorius HOM05D003814 ORTHO05D004399 1.6e-25 121.3 257 32.3
SHI03051 Sapria himalayana HOM05D003814 ORTHO05D004399 1.6e-25 121.3 360 28.9
MD15G1214200 Malus domestica HOM05D003814 ORTHO05D004399 2.1e-25 120.9 389 28.5
PSO017G6459 Papaver somniferum HOM05D003814 ORTHO05D004399 6.1e-25 119.4 365 26.8
Aqoxy5G02065 Aquilegia oxysepala HOM05D003814 ORTHO05D004399 8.0e-25 119.0 385 27.3
SGA_v2.0_scaffold4G02155 Striga asiatica HOM05D003814 ORTHO05D004399 1.0e-24 118.6 391 26.1
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 1.4e-24 118.2 315 30.8
CARHR272950 Cardamine hirsuta HOM05D003814 ORTHO05D004399 1.8e-24 117.9 353 28.3
Haze_11116 Corylus avellana HOM05D003054 ORTHO05D003376 2.3e-24 117.5 300 30.0
BraA09t37130Z Brassica rapa HOM05D003814 ORTHO05D004399 4.0e-24 116.7 380 27.4
Cfa001318 Carpinus fangiana HOM05D003814 ORTHO05D004399 5.2e-24 116.3 345 29.6
Prupe.7G202900 Prunus persica HOM05D003814 ORTHO05D004399 6.8e-24 115.9 376 27.7
CAN.G625.43 Capsicum annuum HOM05D003814 ORTHO05D004399 8.8e-24 115.5 408 26.2
A09p14840 Brassica napus HOM05D003814 ORTHO05D004399 1.2e-23 115.2 381 27.6
Potri.001G462650 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.2e-23 115.2 349 28.4
BcaB07g31449 Brassica carinata HOM05D003814 ORTHO05D004399 2.0e-23 114.4 376 27.9
BcaC04g22552 Brassica carinata HOM05D003814 ORTHO05D004399 3.4e-23 113.6 381 27.3
BolC9t54693H Brassica oleracea HOM05D003814 ORTHO05D004399 3.4e-23 113.6 381 27.3
PGR004G0767 Punica granatum HOM05D003814 ORTHO05D004399 3.4e-23 113.6 314 29.3
PGSC0003DMG400041501 Solanum tuberosum HOM05D003814 ORTHO05D004399 4.4e-23 113.2 393 26.5
AL2G10680 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 5.7e-23 112.8 370 27.0
HanXRQChr11g0341161 Helianthus annuus HOM05D003814 ORTHO05D004399 7.5e-23 112.5 388 25.3
C09p17970 Brassica napus HOM05D003814 ORTHO05D004399 9.8e-23 112.1 381 27.3
Lsat_1_v5_gn_8_86340 Lactuca sativa HOM05D003814 ORTHO05D004399 9.8e-23 112.1 381 28.9
Sp1g34780 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.3e-22 111.7 340 28.8
Carub.0002s0053 Capsella rubella HOM05D003814 ORTHO05D004399 1.7e-22 111.3 337 29.1
CsaV3_3G038340 Cucumis sativus L. HOM05D003814 ORTHO05D004399 1.7e-22 111.3 332 30.4
Prupe.7G202800 Prunus persica HOM05D003814 ORTHO05D004399 2.2e-22 110.9 383 27.2
PSO478G4598 Papaver somniferum HOM05D003814 ORTHO05D004399 2.8e-22 110.5 365 26.6
Zm00001eb202740 Zea mays HOM05D003814 ORTHO05D004399 3.7e-22 110.2 365 28.2
AT1G64290 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 4.8e-22 109.8 371 28.0
A04p14880 Brassica napus HOM05D003814 ORTHO05D004399 1.4e-21 108.2 330 27.3
BraA04t17126Z Brassica rapa HOM05D003814 ORTHO05D004399 1.4e-21 108.2 330 27.3
MELO3C009576.2 Cucumis melo HOM05D003814 ORTHO05D004399 1.4e-21 108.2 328 29.6
Carub.0007s3375 Capsella rubella HOM05D003814 ORTHO05D004399 4.1e-21 106.7 311 28.0
ClCG10G017950 Citrullus lanatus HOM05D003814 ORTHO05D004399 5.4e-21 106.3 322 29.8
Thhalv10028265m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 5.4e-21 106.3 312 27.9
HanXRQChr04g0126041 Helianthus annuus HOM05D003814 ORTHO05D004399 1.2e-20 105.1 381 25.2
HanXRQChr04g0126191 Helianthus annuus HOM05D003814 ORTHO05D004399 1.6e-20 104.8 304 26.0
PSO210G1123 Papaver somniferum HOM05D003814 ORTHO05D004399 2.0e-20 104.4 351 26.8
PGR004G1882 Punica granatum HOM05D003814 ORTHO05D004399 2.0e-20 104.4 284 31.7
unitig_22.g5424 Utricularia gibba HOM05D003814 ORTHO05D004399 2.0e-20 104.4 372 25.8
Haze_11119 Corylus avellana HOM05D003814 ORTHO05D004399 3.5e-20 103.6 197 36.5
Sed0024854 Sechium edule HOM05D003814 ORTHO05D004399 3.5e-20 103.6 399 25.1
MD02G1086300 Malus domestica HOM05D003814 ORTHO05D004399 4.5e-20 103.2 349 26.6
ECA236G4104 Erigeron canadensis HOM05D003814 ORTHO05D004399 1.0e-19 102.1 324 26.2
HanXRQChr04g0107941 Helianthus annuus HOM05D003814 ORTHO05D004399 1.3e-19 101.7 306 26.8
Migut.E01439 Erythranthe guttata HOM05D003814 ORTHO05D004399 2.3e-19 100.9 334 27.2
CARHR290110 Cardamine hirsuta HOM05D003814 ORTHO05D004399 2.9e-19 100.5 314 29.9
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.9e-19 100.5 307 26.1
BraA09t37073Z Brassica rapa HOM05D003814 ORTHO05D004399 8.6e-19 99.0 330 27.9
ECA246G3486 Erigeron canadensis HOM05D003814 ORTHO05D004399 1.1e-18 98.6 347 28.0
BcaB07g31514 Brassica carinata HOM05D003814 ORTHO05D004399 1.5e-18 98.2 367 27.0
FAN26G3081 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.5e-18 97.4 190 37.4
Carub.0007s3374 Capsella rubella HOM05D003814 ORTHO05D004399 5.5e-18 96.3 314 28.0
ClCG10G017770 Citrullus lanatus HOM05D003814 ORTHO05D004399 9.5e-18 95.5 306 28.8
Thhalv10023822m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 9.5e-18 95.5 330 27.6
Aa31LG2G1300 Aethionema arabicum HOM05D003814 ORTHO05D004399 1.2e-17 95.1 301 25.9
FAN28G0704 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.2e-17 95.1 203 35.0
AT1G64295 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 2.1e-17 94.4 313 26.8
FAN23G1165 Fragaria x ananassa HOM05D003814 ORTHO05D004399 4.7e-17 93.2 204 33.8
Peaxi162Scf00047g10141 Petunia axillaris HOM05D003814 ORTHO05D004399 6.1e-17 92.8 306 27.1
TAR624G1176 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.4e-16 91.7 267 27.7
CARHR050300 Cardamine hirsuta HOM05D003814 ORTHO05D004399 1.8e-16 91.3 365 24.9
PGSC0003DMG400037022 Solanum tuberosum HOM05D003814 ORTHO05D004399 1.8e-16 91.3 246 27.2
AL2G10650 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 2.3e-16 90.9 310 26.8
Carub.0002s0052 Capsella rubella HOM05D003814 ORTHO05D004399 2.3e-16 90.9 374 25.9
Sp7g03960 Schrenkiella parvula HOM05D003814 ORTHO05D004399 2.3e-16 90.9 370 26.2
CiPaw.04G145600 Carya illinoinensis HOM05D003814 ORTHO05D004399 3.0e-16 90.5 152 34.9
PGSC0003DMG400046351 Solanum tuberosum HOM05D003814 ORTHO05D004399 5.2e-16 89.7 296 26.4
FvH4_1g08161 Fragaria vesca HOM05D003814 ORTHO05D004399 6.8e-16 89.4 214 30.8
ATR0580G250 Amborella trichopoda HOM05D007162 ORTHO05D007631 1.2e-15 88.6 363 23.7
Carub.0007s3376 Capsella rubella HOM05D003814 ORTHO05D004399 2.0e-15 87.8 260 29.6
SpUn1086_0010 Schrenkiella parvula HOM05D003814 ORTHO05D004399 2.0e-15 87.8 237 28.3
Lsat_1_v5_gn_8_83741 Lactuca sativa HOM05D003814 ORTHO05D004399 6.3e-14 82.8 258 25.2
ECA236G4439 Erigeron canadensis HOM05D003814 ORTHO05D004399 8.3e-14 82.4 251 27.5
Nitab4.5_0000343g0080 Nicotiana tabacum HOM05D003814 ORTHO05D004399 1.4e-13 81.6 349 25.8
BcaC04g22634 Brassica carinata HOM05D003814 ORTHO05D004399 1.8e-13 81.3 348 26.4
HanXRQChr04g0110661 Helianthus annuus HOM05D003814 ORTHO05D004399 3.2e-13 80.5 300 24.0
PSO170G6690 Papaver somniferum HOM05D003814 ORTHO05D004399 2.0e-12 77.8 335 24.2
Lsat_1_v5_gn_2_42360 Lactuca sativa HOM05D003814 ORTHO05D004399 3.5e-12 77.0 200 28.0
MD15G1214100 Malus domestica HOM05D003814 ORTHO05D004399 4.5e-12 76.6 151 33.8
PSO170G5919 Papaver somniferum HOM05D003814 ORTHO05D004399 4.5e-12 76.6 309 24.6
Thhalv10028201m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 1.3e-11 75.1 235 27.2
A02p10510 Brassica napus HOM05D003814 ORTHO05D004399 2.3e-11 74.3 362 25.4
PSO063G5348 Papaver somniferum HOM05D002420 ORTHO05D002422 2.3e-11 74.3 384 25.0
PSO478G3480 Papaver somniferum HOM05D003814 ORTHO05D004399 2.9e-11 73.9 308 24.0
FAN19G3124 Fragaria x ananassa HOM05D003814 ORTHO05D004399 3.9e-11 73.6 189 29.6
PGSC0003DMG400035508 Solanum tuberosum HOM05D003814 ORTHO05D004399 5.0e-11 73.2 156 28.8
Haze_27585 Corylus avellana HOM05D003814 ORTHO05D004399 6.6e-11 72.8 214 29.0
Lsat_1_v5_gn_8_99821 Lactuca sativa HOM05D002339 ORTHO05D004399 6.6e-11 72.8 284 23.2
PSO782G2286 Papaver somniferum HOM05D002420 ORTHO05D002422 6.6e-11 72.8 381 24.7
SalBow1G2869 Salvia bowleyana HOM05D001856 ORTHO05D001959 8.6e-11 72.4 201 26.9
Sabra02G0022400 Salix brachista HOM05D003814 ORTHO05D004399 1.1e-10 72.0 102 42.2
TAR371G0533 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.5e-10 71.6 322 26.4
TAR636G1188 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.5e-10 71.6 234 25.2
Sp1g34880 Schrenkiella parvula HOM05D003814 ORTHO05D004399 2.5e-10 70.9 213 24.4
AT5G41720 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 4.3e-10 70.1 162 29.0
FAN26G2210 Fragaria x ananassa HOM05D003814 ORTHO05D004399 7.3e-10 69.3 108 39.8
PSO782G0050 Papaver somniferum HOM05D003814 ORTHO05D004399 9.5e-10 68.9 334 23.1
A09p14250 Brassica napus HOM05D002195 ORTHO05D002898 1.2e-09 68.6 197 29.4
TAR371G0430 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.2e-09 68.6 368 24.2
C02p17570 Brassica napus HOM05D003814 ORTHO05D004399 2.8e-09 67.4 330 25.5
TAR371G0292 Trochodendron aralioides HOM05D000007 ORTHO05D007252 3.6e-09 67.0 368 24.2
ATR1073G001 Amborella trichopoda HOM05D007162 ORTHO05D007631 6.1e-09 66.2 368 22.3
Peaxi162Scf00067g00233 Petunia axillaris HOM05D003814 ORTHO05D004399 6.1e-09 66.2 247 25.5
AL7G47620 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 8.0e-09 65.9 187 26.7
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 8.0e-09 65.9 327 26.0
Lsat_1_v5_gn_7_15380 Lactuca sativa HOM05D003814 ORTHO05D004399 5.2e-08 63.2 199 24.6
PSO782G3287 Papaver somniferum HOM05D003814 ORTHO05D004399 1.2e-07 62.0 350 24.3
C04p48950 Brassica napus HOM05D003814 ORTHO05D004399 1.5e-07 61.6 205 29.8
BolC4t26476H Brassica oleracea HOM05D003814 ORTHO05D004399 1.5e-07 61.6 205 29.8
QL04p012751 Quercus lobata HOM05D002420 ORTHO05D002422 1.5e-07 61.6 404 22.0
Oeu056889.1 Olea europaea HOM05D000007 ORTHO05D007252 2.6e-07 60.8 316 24.7
Lalb_Chr05g0225771 Lupinus albus HOM05D002420 ORTHO05D002422 4.4e-07 60.1 373 24.9
Oeu014895.1 Olea europaea HOM05D000007 ORTHO05D007252 4.4e-07 60.1 331 24.8
Thhalv10029417m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 9.8e-07 58.9 214 25.2
TAR371G0451 Trochodendron aralioides HOM05D000007 ORTHO05D007252 9.8e-07 58.9 330 26.7
Lsat_1_v5_gn_5_64781 Lactuca sativa HOM05D003814 ORTHO05D004399 1.3e-06 58.5 141 27.0
QL04p013515 Quercus lobata HOM05D002420 ORTHO05D002422 1.7e-06 58.2 397 22.4
Migut.E01447 Erythranthe guttata HOM05D003814 ORTHO05D004399 2.2e-06 57.8 202 27.7
QL04p012671 Quercus lobata HOM05D002420 ORTHO05D002422 2.2e-06 57.8 397 22.4
QL04p012713 Quercus lobata HOM05D002420 ORTHO05D002422 2.2e-06 57.8 411 22.6
QL04p013477 Quercus lobata HOM05D002420 ORTHO05D002422 2.2e-06 57.8 411 22.6
TAR178G0002 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.2e-06 57.8 60 45.0
CANSAT56G3723 Cannabis sativa HOM05D000007 ORTHO05D000017 2.9e-06 57.4 313 23.6
Glyma.02G041600 Glycine max HOM05D000007 ORTHO05D000017 4.9e-06 56.6 360 24.4
PSO801G0304 Papaver somniferum HOM05D003814 ORTHO05D004399 4.9e-06 56.6 205 27.3
CARHR036970 Cardamine hirsuta HOM05D000209 ORTHO05D000129 8.3e-06 55.8 297 23.6


User provided reference genes

Program Settings