Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.002G179600 Gossypium raimondii HOM05D003230 ORTHO05D003680 1.1e-51 206.5 111 100.0
Gorai.007G018000 Gossypium raimondii HOM05D003230 ORTHO05D003680 4.6e-42 174.5 110 90.0
Gohir.D11G017100 Gossypium hirsutum HOM05D003230 ORTHO05D003680 5.1e-41 171.0 112 87.5
Gohir.A11G017300 Gossypium hirsutum HOM05D003230 ORTHO05D003680 9.6e-40 166.8 114 84.2
Gohir.A11G017400 Gossypium hirsutum HOM05D003230 ORTHO05D003680 4.0e-38 161.4 103 85.4
Gohir.D11G017200 Gossypium hirsutum HOM05D003230 ORTHO05D003680 4.0e-38 161.4 103 85.4
Gorai.007G018100 Gossypium raimondii HOM05D003230 ORTHO05D003680 1.2e-37 159.8 102 85.3
Gorai.008G059100 Gossypium raimondii HOM05D003230 ORTHO05D003680 4.2e-35 151.4 95 86.3
Thecc.03G213500 Theobroma cacao HOM05D003230 ORTHO05D003680 2.6e-29 132.1 98 76.5
Duzib205G1067 Durio zibethinus HOM05D003230 ORTHO05D003680 4.2e-27 124.8 98 71.4
Gohir.D12G244701 Gossypium hirsutum HOM05D003230 ORTHO05D003680 4.2e-27 124.8 97 71.1
Duzib068G0649 Durio zibethinus HOM05D003230 ORTHO05D003680 5.5e-27 124.4 98 72.4
Gorai.008G262300 Gossypium raimondii HOM05D003230 ORTHO05D003680 5.5e-27 124.4 98 70.4
Duzib084G0151 Durio zibethinus HOM05D003230 ORTHO05D003680 3.5e-26 121.7 98 72.4
Gohir.A12G243700 Gossypium hirsutum HOM05D003230 ORTHO05D003680 1.0e-25 120.2 96 67.7
Cpa.g.sc37.119 Carica papaya HOM05D003230 ORTHO05D003680 5.1e-25 117.9 98 66.3
Sed0000082 Sechium edule HOM05D003230 ORTHO05D003680 1.1e-24 116.7 102 60.8
Gohir.A02G094400 Gossypium hirsutum HOM05D003230 ORTHO05D003680 5.6e-24 114.4 99 63.6
Gohir.D03G089100 Gossypium hirsutum HOM05D003230 ORTHO05D003680 5.6e-24 114.4 99 63.6
Gorai.003G072400 Gossypium raimondii HOM05D003230 ORTHO05D003680 5.6e-24 114.4 99 63.6
ClCG01G001210 Citrullus lanatus HOM05D003230 ORTHO05D003680 9.6e-24 113.6 98 62.2
Gorai.012G125600 Gossypium raimondii HOM05D003230 ORTHO05D003680 1.3e-23 113.2 70 84.3
Sed0010900 Sechium edule HOM05D003230 ORTHO05D003680 2.1e-23 112.5 98 61.2
MELO3C005814.2 Cucumis melo HOM05D003230 ORTHO05D003680 3.7e-23 111.7 98 62.2
CsaV3_5G001330 Cucumis sativus L. HOM05D003230 ORTHO05D003680 1.2e-21 106.7 98 61.2
Cfa011873 Carpinus fangiana HOM05D003230 ORTHO05D003680 1.5e-21 106.3 106 54.7
Haze_09234 Corylus avellana HOM05D003230 ORTHO05D003680 7.6e-21 104.0 110 53.6
Sc01g0010940 Simmondsia chinensis HOM05D003230 ORTHO05D003680 7.6e-21 104.0 101 58.4
TWI60G0278 Tripterygium wilfordii HOM05D003230 ORTHO05D003680 1.0e-20 103.6 101 56.4
TWI81G0087 Tripterygium wilfordii HOM05D003230 ORTHO05D003680 1.0e-20 103.6 101 57.4
PGR042G1295 Punica granatum HOM05D003230 ORTHO05D003680 1.3e-20 103.2 94 58.5
COL.COLO4_20922 Corchorus olitorius HOM05D003230 ORTHO05D003680 4.9e-20 101.3 101 61.4
MD14G1143500 Malus domestica HOM05D003230 ORTHO05D003680 1.1e-19 100.1 108 50.0
QL12p002913 Quercus lobata HOM05D003230 ORTHO05D003680 1.4e-19 99.8 100 59.0
CiPaw.11G106000 Carya illinoinensis HOM05D003230 ORTHO05D003680 5.5e-19 97.8 103 53.4
Potri.001G454400 Populus trichocarpa HOM05D003230 ORTHO05D003680 9.3e-19 97.1 101 56.4
Sabra16G0307300 Salix brachista HOM05D003230 ORTHO05D003680 9.3e-19 97.1 101 56.4
MD06G1127700 Malus domestica HOM05D003230 ORTHO05D003680 1.2e-18 96.7 103 51.5
Hund25962 Selenicereus undatus HOM05D003230 ORTHO05D003680 1.6e-18 96.3 97 54.6
THA.LOC104806468 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 3.5e-18 95.1 92 57.6
Prupe.5G137500 Prunus persica HOM05D003230 ORTHO05D003680 4.6e-18 94.7 108 50.0
PGR031G1665 Punica granatum HOM05D003230 ORTHO05D003680 4.6e-18 94.7 103 51.5
CANSAT21G1439 Cannabis sativa HOM05D003230 ORTHO05D003680 1.3e-17 93.2 93 57.0
Potri.011G147500 Populus trichocarpa HOM05D003230 ORTHO05D003680 1.8e-17 92.8 90 61.1
GSVIVG01019720001 Vitis vinifera HOM05D003230 ORTHO05D003680 1.8e-17 92.8 103 51.5
vmacro06480 Vaccinium macrocarpon HOM05D003230 ORTHO05D003680 2.3e-17 92.4 104 51.9
Lj2A147G46 Lonicera japonica HOM05D003230 ORTHO05D003680 3.9e-17 91.7 98 54.1
Atru.chr9.2608 Acer truncatum HOM05D003230 ORTHO05D003680 5.1e-17 91.3 98 53.1
CiPaw.12G073700 Carya illinoinensis HOM05D003230 ORTHO05D003680 5.1e-17 91.3 103 52.4
THA.LOC104813070 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 5.1e-17 91.3 93 55.9
TAR374G1299 Trochodendron aralioides HOM05D003230 ORTHO05D003680 5.1e-17 91.3 103 50.5
Eucgr.D02540 Eucalyptus grandis HOM05D003230 ORTHO05D003680 6.7e-17 90.9 102 50.0
Nn7g38179 Nelumbo nucifera HOM05D003230 ORTHO05D003680 6.7e-17 90.9 98 53.1
QL02p026579 Quercus lobata HOM05D003230 ORTHO05D003680 6.7e-17 90.9 113 50.4
Rhsim03G0218900 Rhododendron simsii HOM05D003230 ORTHO05D003680 1.1e-16 90.1 107 48.6
THA.LOC104815499 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 2.5e-16 89.0 99 52.5
Aqoxy5G04400 Aquilegia oxysepala HOM05D003230 ORTHO05D003680 4.3e-16 88.2 95 49.5
arahy.Tifrunner.gnm1.ann1.4JD467 Arachis hypogaea HOM05D003230 ORTHO05D003680 5.7e-16 87.8 102 49.0
arahy.Tifrunner.gnm1.ann1.X6Z9M4 Arachis hypogaea HOM05D003230 ORTHO05D003680 5.7e-16 87.8 102 49.0
Ciclev10020756m.g Citrus clementina HOM05D003230 ORTHO05D003680 5.7e-16 87.8 98 54.1
Lj3C891G10 Lonicera japonica HOM05D003230 ORTHO05D003680 5.7e-16 87.8 103 51.5
FvH4_5g10150 Fragaria vesca HOM05D003230 ORTHO05D003680 7.4e-16 87.4 101 53.5
TPR.G10396 Trifolium pratense HOM05D003230 ORTHO05D003680 9.7e-16 87.0 96 47.9
Lsat_1_v5_gn_7_23521 Lactuca sativa HOM05D003230 ORTHO05D003680 1.3e-15 86.7 92 55.4
CARHR256220 Cardamine hirsuta HOM05D003230 ORTHO05D003680 1.6e-15 86.3 93 52.7
DCAR_020396 Daucus carota HOM05D003230 ORTHO05D003680 1.6e-15 86.3 92 53.3
Hma1.2p1_0115F.1_g055850 Hydrangea macrophylla HOM05D003230 ORTHO05D003680 1.6e-15 86.3 100 50.0
Lj5g0004131 Lotus japonicus HOM05D003230 ORTHO05D003680 2.2e-15 85.9 102 46.1
RcHm_v2.0_Chr7g0188151 Rosa chinensis HOM05D003230 ORTHO05D003680 2.2e-15 85.9 103 50.5
Ca_11396_v3 Cicer arietinum L. HOM05D003230 ORTHO05D003680 2.8e-15 85.5 97 47.4
Ah.09g237290 Amaranthus hybridus HOM05D003230 ORTHO05D003680 4.8e-15 84.7 94 48.9
AUR62014810 Chenopodium quinoa HOM05D003230 ORTHO05D003680 4.8e-15 84.7 99 49.5
Thhalv10028773m.g Eutrema salsugineum HOM05D003230 ORTHO05D003680 4.8e-15 84.7 93 52.7
HanXRQChr04g0116771 Helianthus annuus HOM05D003230 ORTHO05D003680 4.8e-15 84.7 92 54.3
Actinidia34293 Actinidia chinensis HOM05D003230 ORTHO05D003680 6.3e-15 84.3 92 52.2
AL6G44380 Arabidopsis lyrata HOM05D003230 ORTHO05D003680 6.3e-15 84.3 93 51.6
BcaC03g16395 Brassica carinata HOM05D003230 ORTHO05D003680 6.3e-15 84.3 93 52.7
Dinv29184 Davidia involucrata HOM05D003230 ORTHO05D003680 6.3e-15 84.3 92 51.1
ECA236G1073 Erigeron canadensis HOM05D003230 ORTHO05D003680 6.3e-15 84.3 92 53.3
Sp6g07030 Schrenkiella parvula HOM05D003230 ORTHO05D003680 6.3e-15 84.3 93 52.7
AT4G10430 Arabidopsis thaliana HOM05D003230 ORTHO05D003680 8.2e-15 84.0 93 51.6
AUR62017004 Chenopodium quinoa HOM05D003230 ORTHO05D003680 8.2e-15 84.0 99 49.5
DCAR_010553 Daucus carota HOM05D003230 ORTHO05D003680 8.2e-15 84.0 93 53.8
AL1G47600 Arabidopsis lyrata HOM05D003230 ORTHO05D003680 1.4e-14 83.2 96 50.0
BcaB05g23900 Brassica carinata HOM05D003230 ORTHO05D003680 1.4e-14 83.2 93 51.6
AT1G33230 Arabidopsis thaliana HOM05D003230 ORTHO05D003680 1.8e-14 82.8 96 51.0
Carub.0001s3142 Capsella rubella HOM05D003230 ORTHO05D003680 1.8e-14 82.8 93 52.7
Dinv10539 Davidia involucrata HOM05D003230 ORTHO05D003680 1.8e-14 82.8 103 48.5
Sp1g28680 Schrenkiella parvula HOM05D003230 ORTHO05D003680 1.8e-14 82.8 93 53.8
BcaB04g17923 Brassica carinata HOM05D003230 ORTHO05D003680 2.4e-14 82.4 97 50.5
TAR375G0039 Trochodendron aralioides HOM05D003230 ORTHO05D003680 2.4e-14 82.4 103 49.5
CSS0049301 Camellia sinensis var. sinensis HOM05D003230 ORTHO05D003680 3.1e-14 82.0 96 52.1
Solyc03g096810.3 Solanum lycopersicum HOM05D003230 ORTHO05D003680 4.1e-14 81.6 94 52.1
Sopen03g027550 Solanum pennellii HOM05D003230 ORTHO05D003680 4.1e-14 81.6 94 52.1
Dinv11462 Davidia involucrata HOM05D003230 ORTHO05D003680 5.3e-14 81.3 103 47.6
Dinv17274 Davidia involucrata HOM05D003230 ORTHO05D003680 5.3e-14 81.3 92 48.9
Carub.0006s2906 Capsella rubella HOM05D003230 ORTHO05D003680 6.9e-14 80.9 95 49.5
CARHR032530 Cardamine hirsuta HOM05D003230 ORTHO05D003680 6.9e-14 80.9 96 50.0
Thhalv10008088m.g Eutrema salsugineum HOM05D003230 ORTHO05D003680 6.9e-14 80.9 93 51.6
Actinidia08726 Actinidia chinensis HOM05D003230 ORTHO05D003680 9.0e-14 80.5 92 50.0
Lsat_1_v5_gn_4_50621 Lactuca sativa HOM05D003230 ORTHO05D003680 1.5e-13 79.7 100 48.0
Cc02_g00530 Coffea canephora HOM05D003230 ORTHO05D003680 2.0e-13 79.3 100 52.0
HanXRQChr11g0327201 Helianthus annuus HOM05D003230 ORTHO05D003680 2.0e-13 79.3 92 50.0
PGSC0003DMG400000544 Solanum tuberosum HOM05D003230 ORTHO05D003680 2.0e-13 79.3 94 51.1
BcaC08g43889 Brassica carinata HOM05D003230 ORTHO05D003680 2.6e-13 79.0 100 46.0
HanXRQChr17g0556021 Helianthus annuus HOM05D003230 ORTHO05D003680 3.4e-13 78.6 92 47.8
Actinidia28274 Actinidia chinensis HOM05D003230 ORTHO05D003680 4.5e-13 78.2 104 49.0
MBI12_g01758_MAGBIO Magnolia biondii HOM05D003230 ORTHO05D003680 4.5e-13 78.2 92 45.7
Actinidia18693 Actinidia chinensis HOM05D003230 ORTHO05D003680 5.9e-13 77.8 105 47.6
Medtr1g116510 Medicago truncatula HOM05D003230 ORTHO05D003680 5.9e-13 77.8 95 46.3
FAN04G1600 Fragaria x ananassa HOM05D003230 ORTHO05D003680 7.6e-13 77.4 121 46.3
PSO063G4824 Papaver somniferum HOM05D003230 ORTHO05D003680 7.6e-13 77.4 98 48.0
ECA234G3139 Erigeron canadensis HOM05D003230 ORTHO05D003680 1.0e-12 77.0 92 46.7
Lsat_1_v5_gn_0_9600 Lactuca sativa HOM05D003230 ORTHO05D003680 1.0e-12 77.0 92 46.7
PSO384G4355 Papaver somniferum HOM05D003230 ORTHO05D003680 1.7e-12 76.3 98 46.9
Psat6g240960 Pisum sativum HOM05D003230 ORTHO05D003680 1.7e-12 76.3 96 44.8
Eucgr.E01133 Eucalyptus grandis HOM05D003230 ORTHO05D003680 2.2e-12 75.9 84 48.8
vmacro10177 Vaccinium macrocarpon HOM05D003230 ORTHO05D003680 2.2e-12 75.9 107 46.7
VMungo0720G2040 Vigna mungo HOM05D003230 ORTHO05D003680 2.2e-12 75.9 93 44.1
EL10Ac8g20374 Beta vulgaris HOM05D003230 ORTHO05D003680 3.8e-12 75.1 100 43.0
BcaC07g37565 Brassica carinata HOM05D003230 ORTHO05D003680 3.8e-12 75.1 93 48.4
C02p42280 Brassica napus HOM05D003230 ORTHO05D003680 3.8e-12 75.1 99 47.5
Peaxi162Scf01650g00041 Petunia axillaris HOM05D003230 ORTHO05D003680 3.8e-12 75.1 100 46.0
FAN13G1021 Fragaria x ananassa HOM05D003230 ORTHO05D003680 5.0e-12 74.7 134 41.8
MBI04_g04799_MAGBIO Magnolia biondii HOM05D003230 ORTHO05D003680 5.0e-12 74.7 94 45.7
Peaxi162Scf00542g00014 Petunia axillaris HOM05D003230 ORTHO05D003680 5.0e-12 74.7 102 45.1
Nitab4.5_0000021g0290 Nicotiana tabacum HOM05D003230 ORTHO05D003680 6.5e-12 74.3 102 46.1
AUR62029972 Chenopodium quinoa HOM05D003230 ORTHO05D003680 1.1e-11 73.6 92 46.7
Lalb_Chr21g0307571 Lupinus albus HOM05D003230 ORTHO05D003680 1.1e-11 73.6 99 44.4
Hund08704 Selenicereus undatus HOM05D003230 ORTHO05D003680 1.1e-11 73.6 72 54.2
HPP92_025402 Vanilla planifolia HOM05D003230 ORTHO05D003680 1.1e-11 73.6 99 43.4
A02p26560 Brassica napus HOM05D003230 ORTHO05D003680 1.9e-11 72.8 92 50.0
BraA02t07659Z Brassica rapa HOM05D003230 ORTHO05D003680 1.9e-11 72.8 92 50.0
FAN08G0072 Fragaria x ananassa HOM05D003230 ORTHO05D003680 1.9e-11 72.8 134 41.0
Glyma.20G245400 Glycine max HOM05D003230 ORTHO05D003680 1.9e-11 72.8 97 41.2
BolC2t10266H Brassica oleracea HOM05D003230 ORTHO05D003680 2.5e-11 72.4 92 50.0
Phvul.007G004400 Phaseolus vulgaris HOM05D003230 ORTHO05D003680 3.2e-11 72.0 93 44.1
Lalb_Chr02g0144281 Lupinus albus HOM05D003230 ORTHO05D003680 5.5e-11 71.2 98 42.9
AUR62002554 Chenopodium quinoa HOM05D003230 ORTHO05D003680 1.2e-10 70.1 95 44.2
Lalb_Chr06g0164471 Lupinus albus HOM05D003230 ORTHO05D003680 1.2e-10 70.1 96 42.7
HPP92_015201 Vanilla planifolia HOM05D003230 ORTHO05D003680 1.2e-10 70.1 92 40.2
MSTRG.26946 Avicennia marina HOM05D003230 ORTHO05D003680 2.7e-10 68.9 91 47.3
EL10Ac3g06251 Beta vulgaris HOM05D003230 ORTHO05D003680 3.6e-10 68.6 87 46.0
ECA232G3091 Erigeron canadensis HOM05D000068 ORTHO05D000084 3.6e-10 68.6 92 46.7
Aa31LG9G11620 Aethionema arabicum HOM05D003230 ORTHO05D003680 4.6e-10 68.2 93 44.1
Rhsim09G0211400 Rhododendron simsii HOM05D003230 ORTHO05D003680 4.6e-10 68.2 95 46.3
Sabra11G0132600 Salix brachista HOM05D003230 ORTHO05D003680 6.1e-10 67.8 91 49.5
SGA_v2.0_scaffold59G20783 Striga asiatica HOM05D003230 ORTHO05D003680 7.9e-10 67.4 91 45.1
ATR0579G025 Amborella trichopoda HOM05D003230 ORTHO05D003680 1.0e-09 67.0 102 36.3
C06p12740 Brassica napus HOM05D003230 ORTHO05D003680 1.0e-09 67.0 120 38.3
Oeu035876.1 Olea europaea HOM05D003230 ORTHO05D003680 1.4e-09 66.6 94 42.6
A08p08660 Brassica napus HOM05D003230 ORTHO05D003680 2.3e-09 65.9 101 43.6
Glyma.10G295500 Glycine max HOM05D003230 ORTHO05D003680 3.0e-09 65.5 93 41.9
BraA08t32879Z Brassica rapa HOM05D003230 ORTHO05D003680 3.9e-09 65.1 103 42.7
Migut.F00114 Erythranthe guttata HOM05D003230 ORTHO05D003680 3.9e-09 65.1 91 44.0
A09p33080 Brassica napus HOM05D003230 ORTHO05D003680 6.7e-09 64.3 98 43.9
BraA09t38852Z Brassica rapa HOM05D003230 ORTHO05D003680 6.7e-09 64.3 98 43.9
SEGI_40111 Sequoiadendron giganteum HOM05D003230 ORTHO05D003680 8.8e-09 63.9 100 37.0
CDE04G3491 Ceratophyllum demersum HOM05D003230 ORTHO05D003680 4.3e-08 61.6 86 40.7
SalBow2G3519 Salvia bowleyana HOM05D003230 ORTHO05D003680 4.3e-08 61.6 91 41.8
SalBow4G2554 Salvia bowleyana HOM05D003230 ORTHO05D003680 5.7e-08 61.2 90 42.2
Migut.F00964 Erythranthe guttata HOM05D003230 ORTHO05D003680 1.3e-07 60.1 91 40.7
Oeu063746.1 Olea europaea HOM05D003230 ORTHO05D003680 2.2e-07 59.3 92 39.1
Zm00001eb229520 Zea mays HOM05D003230 ORTHO05D003680 2.2e-07 59.3 102 36.3
Nitab4.5_0002691g0010 Nicotiana tabacum HOM05D003230 ORTHO05D003680 3.7e-07 58.5 95 41.1
Os02g0106800 Oryza sativa ssp. japonica HOM05D003230 ORTHO05D003680 8.2e-07 57.4 100 34.0
BolC6t36431H Brassica oleracea HOM05D003230 ORTHO05D003680 1.1e-06 57.0 111 36.0
FAN18G2848 Fragaria x ananassa HOM05D003230 ORTHO05D003680 1.1e-06 57.0 74 48.6
Oeu006168.1 Olea europaea HOM05D003230 ORTHO05D003680 1.1e-06 57.0 94 42.6
unitig_578.g16669 Utricularia gibba HOM05D003230 ORTHO05D003680 2.4e-06 55.8 92 41.3
CDE12G0880 Ceratophyllum demersum HOM05D003230 ORTHO05D003680 5.3e-06 54.7 92 35.9


User provided reference genes

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