Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.6e-297 1024.6 509 100.0
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.5e-292 1006.9 509 98.0
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.5e-281 972.2 509 95.9
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 3.6e-259 897.9 514 84.4
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.7e-256 889.0 511 84.5
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 2.0e-254 882.1 513 85.0
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 9.0e-226 786.9 514 76.8
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.2e-222 776.5 525 74.3
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.2e-222 776.5 525 74.9
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.1e-222 775.8 525 74.5
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 4.0e-210 734.9 518 69.9
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.4e-209 731.9 517 69.4
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.7e-208 729.6 520 69.4
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 3.2e-207 725.3 522 70.1
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.3e-205 719.2 519 69.9
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.5e-204 715.7 529 67.7
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 5.7e-204 714.5 508 69.9
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 7.4e-204 714.1 519 69.9
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.3e-203 713.4 531 67.6
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 2.8e-203 712.2 523 69.6
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 3.7e-203 711.8 508 70.1
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 4.8e-203 711.4 529 68.2
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 6.3e-203 711.1 515 69.9
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.2e-203 710.7 509 69.2
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.2e-203 710.7 509 69.2
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 4.1e-202 708.4 526 67.7
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 4.1e-202 708.4 531 67.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.6e-201 705.7 521 67.6
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.7e-200 703.0 518 70.5
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.7e-200 703.0 535 64.5
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.0e-200 701.4 509 68.4
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.0e-200 701.4 509 68.4
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 5.0e-200 701.4 530 66.6
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.4e-199 699.9 517 66.2
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.4e-199 699.9 534 68.0
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.4e-199 699.9 534 68.0
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 3.2e-199 698.7 527 65.8
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.2e-198 696.8 509 67.6
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 1.2e-198 696.8 521 68.9
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.6e-198 696.4 509 67.6
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.1e-198 696.0 511 67.5
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.7e-198 695.7 509 67.6
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.8e-197 693.0 517 66.2
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 3.0e-197 692.2 520 66.7
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 3.9e-197 691.8 509 66.4
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 6.7e-197 691.0 523 64.2
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 7.4e-196 687.6 523 65.0
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.3e-195 686.8 546 63.7
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 2.8e-195 685.6 546 63.6
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 6.3e-195 684.5 519 65.7
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 8.2e-195 684.1 523 64.8
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.4e-194 683.3 510 67.5
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.9e-194 681.0 510 67.1
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 6.9e-194 681.0 510 66.1
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.2e-193 680.2 523 64.8
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 2.0e-193 679.5 519 64.7
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 5.9e-193 677.9 517 66.2
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 7.7e-193 677.6 519 65.7
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.3e-192 676.8 519 65.7
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 5.0e-192 674.9 507 66.3
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 6.5e-192 674.5 527 64.7
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 8.5e-192 674.1 512 64.8
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.1e-191 673.7 517 66.7
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.4e-191 673.3 513 64.9
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 7.2e-191 671.0 519 64.5
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 7.2e-191 671.0 498 67.1
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.6e-190 668.7 506 66.2
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 7.9e-190 667.5 513 63.9
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.0e-189 667.2 459 70.8
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.8e-189 666.4 523 65.0
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 3.0e-189 665.6 515 64.9
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.0e-188 662.9 520 63.1
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 2.6e-188 662.5 518 63.7
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 9.7e-188 660.6 531 64.2
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.2e-187 659.4 531 63.8
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.8e-187 659.1 532 62.0
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 6.3e-187 657.9 510 64.1
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.4e-186 656.8 524 62.0
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 3.1e-186 655.6 545 63.7
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 7.0e-186 654.4 536 61.2
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 7.0e-186 654.4 528 61.9
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 7.0e-186 654.4 535 62.2
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.2e-185 653.7 543 63.0
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 2.0e-185 652.9 531 61.4
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 3.8e-184 648.7 546 60.6
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.9e-183 646.4 534 60.5
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 7.2e-183 644.4 530 61.1
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 2.7e-182 642.5 507 63.9
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.7e-182 641.7 542 60.7
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 8.0e-182 641.0 509 62.1
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 2.3e-181 639.4 455 68.4
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 7.4e-180 634.4 538 59.7
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 9.7e-180 634.0 517 61.5
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 2.8e-179 632.5 522 63.2
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.2e-179 630.9 517 62.1
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 4.1e-178 628.6 528 60.6
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.2e-177 627.1 519 61.7
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.2e-177 627.1 471 65.6
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.6e-177 626.7 454 66.5
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.5e-175 619.4 520 58.7
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 3.2e-175 619.0 403 72.5
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 3.3e-172 609.0 523 59.3
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.7e-171 606.7 460 61.3
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 8.2e-171 604.4 507 57.4
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 5.3e-170 601.7 458 63.8
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 4.5e-169 598.6 462 62.8
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 7.7e-169 597.8 393 72.3
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 2.9e-160 569.3 447 63.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.6e-160 568.2 383 71.0
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.3e-159 565.8 460 62.4
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 8.0e-158 561.2 438 61.9
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-153 547.4 469 61.2
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 7.3e-151 538.1 438 61.0
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.5e-148 530.4 312 80.8
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 5.4e-146 521.9 307 80.8
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 6.6e-144 515.0 312 76.3
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.7e-139 500.4 303 77.9
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 6.2e-134 481.9 312 70.8
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.0e-128 464.5 383 61.1
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.1e-122 444.5 289 71.3
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.7e-120 437.2 516 42.4
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 7.6e-116 421.8 247 81.8
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.6e-110 404.1 242 79.3
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 6.2e-110 402.1 239 81.2
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 8.1e-110 401.7 458 44.8
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.9e-106 390.6 408 48.0
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 9.6e-95 351.7 468 46.6
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 3.3e-87 326.6 339 53.4
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 5.7e-87 325.9 199 78.9
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.0e-80 305.1 262 56.1
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 3.9e-80 303.1 201 72.1
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 7.9e-73 278.9 217 61.3
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.9e-72 276.6 273 55.7
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 9.7e-71 271.9 167 79.0
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.3e-54 218.4 157 70.1
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 8.3e-54 215.7 148 65.5
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 8.3e-54 215.7 148 65.5
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 9.1e-53 212.2 124 75.0
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 5.9e-52 209.5 201 55.2
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 2.9e-51 207.2 217 49.3
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 3.8e-51 206.8 201 54.2
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-47 194.5 431 30.4
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 4.1e-45 186.8 108 81.5
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.0e-43 182.2 180 49.4
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.6e-41 173.7 106 70.8
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.6e-39 167.5 168 50.0
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 2.7e-36 157.5 167 50.3
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.5e-34 151.8 98 75.5
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 9.5e-34 149.1 256 36.3
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 1.0e-32 145.6 158 50.0
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.4e-32 145.2 287 33.8
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 2.0e-31 141.4 158 48.7
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 9.8e-31 139.0 79 75.9
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 9.8e-31 139.0 79 75.9
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 3.2e-29 134.0 259 34.7
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.0e-27 129.0 85 67.1
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.3e-27 128.6 98 64.3
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 9.5e-26 122.5 162 44.4
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 3.9e-19 100.5 72 70.8
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.5e-18 98.6 106 50.9
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-18 97.1 59 71.2
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 2.2e-14 84.7 90 51.1
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.1e-08 64.3 34 94.1
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 5.8e-07 60.1 213 26.3


User provided reference genes

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