Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 3.1e-117 425.2 232 100.0
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 3.1e-117 425.2 232 100.0
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 9.4e-114 413.7 232 97.8
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 2.6e-87 325.9 224 83.5
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 9.8e-87 323.9 228 84.6
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 1.2e-84 317.0 218 83.9
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 1.4e-77 293.5 227 75.8
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 4.7e-57 225.3 226 69.5
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 7.1e-53 211.5 226 63.7
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 6.0e-52 208.4 235 59.1
Duzib170G0657 Durio zibethinus HOM05D007784 ORTHO05D008654 1.7e-51 206.8 215 67.0
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 2.3e-51 206.5 241 58.9
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 1.8e-48 196.8 235 59.6
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 6.9e-48 194.9 228 57.0
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 7.6e-47 191.4 239 57.3
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 4.2e-45 185.7 241 54.4
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 5.4e-45 185.3 245 53.5
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 9.3e-45 184.5 237 57.0
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 1.0e-43 181.0 252 52.8
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 1.3e-43 180.6 232 53.4
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 1.8e-43 180.3 239 54.8
Gorai.013G169700 Gossypium raimondii HOM05D007784 ORTHO05D008654 2.3e-43 179.9 196 67.9
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 4.5e-39 165.6 238 52.9
MD03G1230800 Malus domestica HOM05D007784 ORTHO05D008654 3.8e-38 162.5 238 52.1
RcHm_v2.0_Chr5g0032821 Rosa chinensis HOM05D007784 ORTHO05D008654 2.4e-37 159.8 234 50.4
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 2.1e-36 156.8 236 53.4
FvH4_3g19630 Fragaria vesca HOM05D007784 ORTHO05D008654 2.7e-36 156.4 236 50.0
FAN11G2265 Fragaria x ananassa HOM05D007784 ORTHO05D008654 2.7e-36 156.4 236 50.0
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 4.6e-36 155.6 227 52.0
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 1.0e-35 154.5 239 54.0
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 3.0e-35 152.9 237 47.3
FAN16G2579 Fragaria x ananassa HOM05D007784 ORTHO05D008654 8.7e-35 151.4 228 51.8
FAN25G3654 Fragaria x ananassa HOM05D007784 ORTHO05D008654 4.8e-33 145.6 236 50.4
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 1.8e-32 143.7 231 50.6
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 9.0e-32 141.4 216 43.5
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 1.0e-30 137.9 243 48.6
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 2.9e-30 136.3 237 42.2
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 3.2e-29 132.9 241 47.3
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 3.9e-27 125.9 221 48.9
CANSAT56G4083 Cannabis sativa HOM05D007784 ORTHO05D008654 6.7e-27 125.2 269 45.4
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 1.9e-26 123.6 209 44.5
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 2.5e-26 123.2 227 48.0
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 2.5e-26 123.2 226 50.9
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 9.7e-26 121.3 214 48.6
Cc05_g11830 Coffea canephora HOM05D007784 ORTHO05D008654 1.6e-25 120.6 238 46.2
TAR627G0444 Trochodendron aralioides HOM05D007784 ORTHO05D008654 2.2e-25 120.2 262 43.1
CsaV3_4G033550 Cucumis sativus L. HOM05D007784 ORTHO05D008654 3.7e-25 119.4 239 46.9
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 6.3e-25 118.6 213 47.9
TAR627G0175 Trochodendron aralioides HOM05D007784 ORTHO05D008654 6.3e-25 118.6 262 43.1
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 8.2e-25 118.2 123 68.3
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 1.5e-23 114.0 223 45.7
Medtr0598s0020 Medicago truncatula HOM05D007784 ORTHO05D008654 2.0e-23 113.6 160 56.2
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 4.5e-23 112.5 250 41.6
TPR.G18874 Trifolium pratense HOM05D007784 ORTHO05D008654 1.0e-22 111.3 159 49.7
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 1.9e-21 107.1 228 46.5
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 3.2e-21 106.3 219 46.1
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 4.2e-21 105.9 224 47.3
Dinv14932 Davidia involucrata HOM05D007784 ORTHO05D008654 4.2e-21 105.9 226 35.0
Oeu051079.1 Olea europaea HOM05D007784 ORTHO05D008654 4.2e-21 105.9 223 46.2
Nn1g06458 Nelumbo nucifera HOM05D007784 ORTHO05D008654 5.5e-21 105.5 230 38.7
Aqoxy1G02344 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 9.4e-21 104.8 210 43.8
Aqoxy5G00008 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 1.2e-20 104.4 210 43.8
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 1.6e-20 104.0 236 40.3
Peaxi162Scf00069g01710 Petunia axillaris HOM05D007784 ORTHO05D008654 6.1e-20 102.1 196 39.3
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 1.0e-19 101.3 221 38.9
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 1.8e-19 100.5 228 38.6
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 3.3e-18 96.3 222 45.5
EL10Ac4g08222 Beta vulgaris HOM05D007784 ORTHO05D008654 4.3e-18 95.9 255 42.0
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 4.3e-18 95.9 219 37.9
DCAR_017127 Daucus carota HOM05D007784 ORTHO05D008654 4.3e-18 95.9 220 40.0
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 4.3e-18 95.9 254 35.4
PGSC0003DMG400012442 Solanum tuberosum HOM05D007784 ORTHO05D008654 9.7e-18 94.7 246 39.0
PGR083G0236 Punica granatum HOM05D007784 ORTHO05D008654 3.7e-17 92.8 228 33.8
Sopen07g031150 Solanum pennellii HOM05D007784 ORTHO05D008654 6.9e-16 88.6 222 41.0
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 9.1e-16 88.2 226 36.3
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 4.5e-15 85.9 228 33.3
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 1.3e-14 84.3 286 30.1
BcaB06g29549 Brassica carinata HOM05D009851 ORTHO05D008654 1.3e-14 84.3 205 41.0
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 1.3e-14 84.3 206 43.2
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 1.7e-14 84.0 262 32.1
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 1.7e-14 84.0 262 32.1
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 1.7e-14 84.0 262 32.1
Carub.0001s4232 Capsella rubella HOM05D009851 ORTHO05D008654 1.7e-14 84.0 285 28.4
ECA234G3343 Erigeron canadensis HOM05D007784 ORTHO05D008654 1.7e-14 84.0 219 38.8
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 2.2e-14 83.6 285 30.5
Solyc07g062960.1 Solanum lycopersicum HOM05D007784 ORTHO05D008654 2.2e-14 83.6 220 40.5
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 5.0e-14 82.4 238 36.6
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 6.5e-14 82.0 221 42.5
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 8.5e-14 81.6 207 37.2
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 8.5e-14 81.6 263 31.9
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 8.5e-14 81.6 207 37.2
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 1.1e-13 81.3 262 31.7
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 1.1e-13 81.3 218 39.0
Nn1g04167 Nelumbo nucifera HOM05D007784 ORTHO05D008654 1.1e-13 81.3 236 37.7
Thhalv10012165m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 1.4e-13 80.9 280 30.0
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 1.9e-13 80.5 213 36.2
AUR62019455 Chenopodium quinoa HOM05D007784 ORTHO05D008654 1.9e-13 80.5 262 32.4
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 4.2e-13 79.3 213 36.2
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 5.5e-13 79.0 280 28.9
Actinidia12799 Actinidia chinensis HOM05D000223 ORTHO05D000736 7.2e-13 78.6 129 51.9
Sed0023140 Sechium edule HOM05D007784 ORTHO05D008654 3.6e-12 76.3 54 70.4
Sp1g39710 Schrenkiella parvula HOM05D009851 ORTHO05D008654 3.0e-11 73.2 279 29.7
BcaB07g33353 Brassica carinata HOM05D009851 ORTHO05D008654 3.9e-11 72.8 267 30.0
BcaB03g11679 Brassica carinata HOM05D009851 ORTHO05D008654 2.0e-10 70.5 75 53.3
Migut.M00785 Erythranthe guttata HOM05D007784 ORTHO05D008654 2.0e-10 70.5 221 38.0
SalBow8G3696 Salvia bowleyana HOM05D007784 ORTHO05D008654 1.7e-09 67.4 94 53.2
Ah.06g184500 Amaranthus hybridus HOM05D007784 ORTHO05D008654 8.2e-09 65.1 249 30.9
Rhsim04G0022200 Rhododendron simsii HOM05D058066 ORTHO05D008654 2.4e-08 63.5 92 42.4
Eucgr.F03301 Eucalyptus grandis HOM05D007784 ORTHO05D008654 7.0e-08 62.0 178 42.1
DCAR_019564 Daucus carota HOM05D007784 ORTHO05D008654 4.5e-07 59.3 224 37.5
DCAR_013118 Daucus carota HOM05D007784 ORTHO05D008654 1.7e-06 57.4 98 30.6
SGA_v2.0_scaffold73G24239 Striga asiatica HOM05D007784 ORTHO05D008654 3.8e-06 56.2 214 37.4


User provided reference genes

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