Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.002G040900 Gossypium raimondii HOM05D008142 ORTHO05D009674 3.9e-81 304.7 148 100.0
Gohir.A01G043200 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.1e-72 276.6 148 92.6
Gorai.002G040600 Gossypium raimondii HOM05D008142 ORTHO05D009674 2.2e-55 219.2 149 74.5
Gohir.A01G042900 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.0e-53 212.6 149 72.5
Gohir.D01G033500 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.0e-53 212.6 149 72.5
Gohir.A01G043100 Gossypium hirsutum HOM05D008142 ORTHO05D009674 3.5e-53 211.8 149 71.1
Gohir.A01G043000 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.7e-52 209.5 149 69.1
Gohir.D01G033700 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.7e-52 209.5 149 70.5
Gohir.D01G033600 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.5e-51 206.5 149 69.1
Gorai.002G040500 Gossypium raimondii HOM05D008142 ORTHO05D009674 9.4e-51 203.8 149 69.1
Gorai.002G040800 Gossypium raimondii HOM05D008142 ORTHO05D009674 1.2e-50 203.4 149 69.1
Gorai.002G040700 Gossypium raimondii HOM05D008142 ORTHO05D009674 2.1e-50 202.6 149 68.5
Thecc.07G144200 Theobroma cacao HOM05D008142 ORTHO05D009674 3.6e-50 201.8 151 71.5
Gohir.A01G042800 Gossypium hirsutum HOM05D008142 ORTHO05D009674 8.0e-50 200.7 149 68.5
Gohir.D01G033400 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.8e-49 199.5 149 68.5
COL.COLO4_17432 Corchorus olitorius HOM05D008142 ORTHO05D009674 1.7e-44 183.0 152 62.5
Thecc.07G144400 Theobroma cacao HOM05D008142 ORTHO05D009674 1.2e-24 117.1 162 44.4
QL04p069987 Quercus lobata HOM05D008142 ORTHO05D009674 1.8e-17 93.2 159 40.3
COL.COLO4_17430 Corchorus olitorius HOM05D008142 ORTHO05D009674 2.6e-16 89.4 127 47.2
FAN16G2943 Fragaria x ananassa HOM05D008142 ORTHO05D009674 3.4e-16 89.0 152 41.4
QL04p069966 Quercus lobata HOM05D008142 ORTHO05D009674 1.7e-15 86.7 160 40.6
FvH4_3g16940 Fragaria vesca HOM05D008142 ORTHO05D009674 2.9e-15 85.9 152 40.8
FAN11G1471 Fragaria x ananassa HOM05D008142 ORTHO05D009674 2.9e-15 85.9 152 40.8
FAN21G3515 Fragaria x ananassa HOM05D008142 ORTHO05D009674 3.7e-15 85.5 152 41.4
CSS0003990 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 6.4e-15 84.7 176 31.2
CSS0032813 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 8.3e-15 84.3 154 35.7
RcHm_v2.0_Chr5g0028181 Rosa chinensis HOM05D008142 ORTHO05D009674 1.1e-14 84.0 158 39.9
CSS0017983 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 1.9e-14 83.2 176 31.2
Eucgr.F03213 Eucalyptus grandis HOM05D008142 ORTHO05D009674 9.2e-14 80.9 134 37.3
Ciclev10022628m.g Citrus clementina HOM05D008142 ORTHO05D009674 1.6e-13 80.1 145 37.9
Dinv13326 Davidia involucrata HOM05D000230 ORTHO05D000176 8.6e-12 74.3 166 34.9
RhsimUnG0205200 Rhododendron simsii HOM05D008142 ORTHO05D009674 4.3e-11 72.0 177 32.8
Aqoxy1G01717 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 9.5e-11 70.9 153 32.0
Dinv26679 Davidia involucrata HOM05D008142 ORTHO05D009674 2.1e-10 69.7 160 33.1
Nn3g20734 Nelumbo nucifera HOM05D008142 ORTHO05D009674 2.1e-10 69.7 164 31.1
Potri.001G379400 Populus trichocarpa HOM05D008142 ORTHO05D009674 2.1e-10 69.7 173 37.0
Actinidia35170 Actinidia chinensis HOM05D008142 ORTHO05D009674 3.6e-10 68.9 169 32.0
Nn4g26546 Nelumbo nucifera HOM05D008142 ORTHO05D009674 1.1e-09 67.4 161 31.7
RhsimUnG0205300 Rhododendron simsii HOM05D008142 ORTHO05D009674 2.4e-09 66.2 176 30.7
MD03G1255500 Malus domestica HOM05D008142 ORTHO05D009674 3.1e-09 65.9 171 33.3
Cfa019469 Carpinus fangiana HOM05D008142 ORTHO05D009674 8.9e-09 64.3 161 33.5
Cpa.g.sc714.2 Carica papaya HOM05D008142 ORTHO05D009674 3.4e-08 62.4 99 43.4
Haze_08481 Corylus avellana HOM05D008142 ORTHO05D009674 5.8e-08 61.6 161 31.7
Aqoxy1G01721 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 7.6e-08 61.2 143 31.5
COL.COLO4_17431 Corchorus olitorius HOM05D023069 ORTHO05D009674 7.6e-08 61.2 133 35.3
Thecc.07G144300 Theobroma cacao HOM05D023069 ORTHO05D009674 9.9e-08 60.8 111 36.9
Actinidia18850 Actinidia chinensis HOM05D008142 ORTHO05D009674 1.3e-07 60.5 136 33.8
Prupe.4G151600 Prunus persica HOM05D008142 ORTHO05D009674 1.3e-07 60.5 167 32.3
MSTRG.15018 Avicennia marina HOM05D008142 ORTHO05D009674 1.7e-07 60.1 167 27.5
Hma1.2p1_0280F.1_g112890 Hydrangea macrophylla HOM05D008142 ORTHO05D009674 1.7e-07 60.1 168 31.5
TAR627G0365 Trochodendron aralioides HOM05D008142 ORTHO05D009674 1.7e-07 60.1 156 30.1
Sabra16G0249900 Salix brachista HOM05D008142 ORTHO05D009674 2.9e-07 59.3 168 33.3
Glyma.13G260100 Glycine max HOM05D010689 ORTHO05D012855 6.4e-07 58.2 110 31.8
Glyma.13G260401 Glycine max HOM05D010689 ORTHO05D012855 1.1e-06 57.4 113 31.0
Sopen07g030160 Solanum pennellii HOM05D011950 ORTHO05D009674 1.4e-06 57.0 182 28.0
Oeu001311.1 Olea europaea HOM05D008142 ORTHO05D009674 1.9e-06 56.6 148 31.1
TAR629G2490 Trochodendron aralioides HOM05D008142 ORTHO05D009674 1.9e-06 56.6 160 28.1
Glyma.15G247900 Glycine max HOM05D010689 ORTHO05D012855 2.4e-06 56.2 120 30.8
Phvul.005G061801 Phaseolus vulgaris HOM05D010689 ORTHO05D012855 3.2e-06 55.8 87 32.2
PGSC0003DMG400007050 Solanum tuberosum HOM05D011950 ORTHO05D009674 3.2e-06 55.8 181 28.7
Nitab4.5_0004038g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 4.2e-06 55.5 177 27.7


User provided reference genes

Program Settings