Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 3.1e-202 708.4 389 100.0
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.9e-185 651.0 402 90.0
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.3e-176 623.2 402 88.1
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 2.1e-150 536.2 405 78.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 7.0e-138 494.6 404 72.3
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.9e-130 469.9 424 69.6
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 8.9e-125 451.1 403 66.7
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.1e-82 311.2 423 50.6
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.9e-82 310.5 426 51.2
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 4.2e-82 309.3 390 50.8
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 6.1e-81 305.4 406 49.8
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.5e-79 300.8 420 47.4
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.8e-77 293.9 409 49.9
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 2.9e-75 286.6 392 48.5
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.1e-74 284.6 394 48.7
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 1.1e-74 284.6 394 48.0
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.5e-74 283.5 401 48.9
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 3.2e-74 283.1 411 45.5
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 4.2e-74 282.7 394 48.2
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 5.5e-74 282.3 419 47.7
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 7.2e-74 282.0 400 47.8
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 9.4e-74 281.6 390 48.5
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 3.6e-73 279.6 352 51.4
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 3.6e-73 279.6 399 48.1
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 4.6e-73 279.3 405 48.6
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.0e-72 278.1 394 49.2
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.8e-72 277.3 423 45.2
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 3.0e-72 276.6 417 48.0
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 3.0e-72 276.6 393 48.1
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 3.0e-72 276.6 390 48.5
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 3.9e-72 276.2 458 45.0
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 5.1e-72 275.8 388 47.9
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.5e-71 274.2 394 47.2
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 2.0e-71 273.9 383 47.5
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.5e-71 273.5 427 45.7
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.3e-71 273.1 403 49.9
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 9.7e-71 271.6 411 49.1
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.7e-70 269.6 393 49.1
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 4.8e-70 269.2 420 46.7
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 8.2e-70 268.5 233 64.8
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.1e-69 268.1 394 47.2
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 1.4e-69 267.7 433 46.0
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 4.1e-69 266.2 415 44.6
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 1.2e-68 264.6 394 47.5
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.5e-68 264.2 398 47.7
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 3.4e-68 263.1 398 47.2
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.4e-68 263.1 433 44.6
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.3e-67 261.2 435 43.2
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.9e-67 260.0 383 46.7
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.9e-67 260.0 425 43.3
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 6.5e-67 258.8 318 50.9
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.1e-66 258.1 427 42.9
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 5.5e-66 255.8 576 38.0
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 7.9e-65 251.9 386 45.3
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 6.7e-64 248.8 386 45.6
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 2.0e-63 247.3 405 44.0
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 3.3e-63 246.5 389 45.2
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 7.4e-63 245.4 255 56.5
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.4e-63 245.4 386 45.1
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 9.7e-63 245.0 300 49.7
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 4.8e-62 242.7 397 43.8
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 4.8e-62 242.7 418 43.1
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 5.3e-61 239.2 405 43.0
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 1.2e-60 238.0 393 42.2
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.2e-60 238.0 214 61.2
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 4.5e-60 236.1 415 42.4
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 1.3e-59 234.6 384 44.8
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.7e-59 234.2 374 43.0
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.5e-58 231.1 402 42.3
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 9.4e-58 228.4 403 41.9
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 3.6e-57 226.5 397 43.6
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 6.1e-57 225.7 204 60.8
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 2.0e-55 220.7 211 60.7
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 2.0e-55 220.7 402 41.5
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 2.6e-55 220.3 429 39.9
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 9.7e-55 218.4 214 58.4
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.3e-54 218.0 408 39.7
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 2.2e-54 217.2 200 59.5
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 6.3e-54 215.7 434 39.4
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.4e-53 213.8 408 39.0
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 3.1e-53 213.4 210 58.6
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 3.1e-53 213.4 266 50.8
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 7.0e-53 212.2 396 40.7
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 2.0e-52 210.7 164 65.9
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 4.5e-52 209.5 344 47.1
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.0e-51 208.4 390 43.3
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 1.3e-51 208.0 383 42.3
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.5e-50 204.5 222 54.1
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.0e-48 196.4 392 40.6
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 2.6e-47 193.7 505 35.8
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.2e-46 190.7 397 41.3
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 2.8e-46 190.3 395 39.0
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 2.4e-45 187.2 333 43.2
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 9.1e-45 185.3 383 41.3
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 5.5e-42 176.0 393 39.9
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.6e-41 173.3 351 42.2
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 8.0e-41 172.2 390 39.5
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.0e-40 171.8 176 55.1
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 4.0e-40 169.9 321 41.4
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 4.0e-40 169.9 208 49.0
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 8.8e-40 168.7 390 39.5
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.5e-39 167.9 130 62.3
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.6e-39 167.2 163 57.1
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 3.4e-39 166.8 390 39.5
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 5.7e-39 166.0 390 39.7
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 3.7e-38 163.3 203 49.3
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 8.3e-38 162.2 206 45.6
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 3.8e-35 153.3 293 39.6
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 8.6e-35 152.1 278 44.6
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.6e-31 140.6 197 43.7
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 8.3e-30 135.6 228 39.5
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-28 131.7 138 51.4
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 1.2e-28 131.7 320 38.1
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 5.9e-28 129.4 385 36.1
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.1e-26 125.2 363 31.4
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.5e-26 124.8 214 41.6
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 4.3e-26 123.2 357 35.3
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.8e-25 120.6 127 49.6
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 2.6e-23 114.0 77 74.0
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.9e-22 110.5 82 72.0
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.7e-20 104.0 239 35.1
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 9.5e-18 95.5 89 52.8
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 2.6e-15 87.4 64 65.6
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.6e-15 87.4 116 44.8
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 2.9e-14 84.0 106 44.3
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 3.7e-14 83.6 309 31.4
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 1.6e-12 78.2 267 36.3
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 2.1e-12 77.8 182 35.7
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 3.5e-12 77.0 212 34.4
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 3.5e-12 77.0 99 43.4
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 1.7e-11 74.7 43 76.7
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 5.1e-11 73.2 301 30.2
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 2.1e-09 67.8 294 33.0
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 1.8e-08 64.7 86 41.9
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 1.2e-07 62.0 56 55.4
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 1.5e-07 61.6 84 40.5
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 3.4e-07 60.5 84 39.3
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 3.4e-07 60.5 295 29.2
TPR.G20540 Trifolium pratense HOM05D005116 ORTHO05D005937 5.8e-07 59.7 46 76.1
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 7.6e-07 59.3 78 50.0
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 7.6e-07 59.3 78 50.0
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 1.3e-06 58.5 61 49.2
BraA08t35622Z Brassica rapa HOM05D005116 ORTHO05D005937 1.3e-06 58.5 357 29.4
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 1.7e-06 58.2 52 51.9
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 2.9e-06 57.4 84 36.9


User provided reference genes

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