Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.002G011100 Gossypium raimondii HOM05D014780 ORTHO05D010368 1.7e-142 509.2 245 100.0
Gohir.D01G009050 Gossypium hirsutum HOM05D014780 ORTHO05D010368 3.1e-139 498.4 245 97.6
Gohir.A01G009460 Gossypium hirsutum HOM05D014780 ORTHO05D010368 2.4e-131 472.2 245 93.5
Thecc.03G139400 Theobroma cacao HOM05D014780 ORTHO05D010368 1.1e-51 207.6 273 45.8
COL.COLO4_37245 Corchorus olitorius HOM05D014780 ORTHO05D010368 4.3e-24 115.9 229 38.0
Ciclev10033911m.g Citrus clementina HOM05D014780 ORTHO05D010368 5.6e-24 115.5 271 34.3
Prupe.7G246000 Prunus persica HOM05D019654 ORTHO05D010368 2.2e-20 103.6 237 33.8
MD11G1290300 Malus domestica HOM05D019654 ORTHO05D010368 7.1e-19 98.6 241 33.6
Potri.001G326100 Populus trichocarpa HOM05D014780 ORTHO05D010368 6.0e-18 95.5 262 31.3
Prupe.8G245300 Prunus persica HOM05D019654 ORTHO05D010368 1.1e-16 91.3 246 31.3
Potri.009G126600 Populus trichocarpa HOM05D014780 ORTHO05D010368 4.7e-15 85.9 278 27.3
Sed0006744 Sechium edule HOM05D029525 ORTHO05D010368 1.4e-14 84.3 256 28.5
Sabra09G0097300 Salix brachista HOM05D000057 ORTHO05D010368 1.8e-14 84.0 285 25.6
Atru.chr5.1357 Acer truncatum HOM05D000520 ORTHO05D010368 1.1e-11 74.7 83 47.0
Haze_05094 Corylus avellana HOM05D010143 ORTHO05D010368 7.1e-11 72.0 256 29.3
ClCG09G006850 Citrullus lanatus HOM05D029525 ORTHO05D010368 2.1e-10 70.5 241 28.6
THA.LOC104802224 Tarenaya hassleriana HOM05D010390 ORTHO05D012282 2.1e-10 70.5 73 39.7
Aa31LG1G15860 Aethionema arabicum HOM05D010390 ORTHO05D012282 1.3e-09 67.8 224 27.2
AL7G29470 Arabidopsis lyrata HOM05D010390 ORTHO05D012282 1.3e-09 67.8 64 45.3
AT4G23882 Arabidopsis thaliana HOM05D010390 ORTHO05D012282 2.3e-09 67.0 243 27.2
A09p69400 Brassica napus HOM05D000489 ORTHO05D000372 3.0e-09 66.6 65 44.6
BolC8t52932H Brassica oleracea HOM05D000489 ORTHO05D012282 3.0e-09 66.6 65 44.6
Carub.0001s2868 Capsella rubella HOM05D010390 ORTHO05D012282 3.0e-09 66.6 88 38.6
Duzib138G0353 Durio zibethinus HOM05D016083 ORTHO05D010368 3.0e-09 66.6 217 29.5
BraA04t18955Z Brassica rapa HOM05D000489 ORTHO05D000372 3.9e-09 66.2 65 44.6
QL05p060436 Quercus lobata HOM05D012615 ORTHO05D010044 5.1e-09 65.9 237 29.1
A04p35220 Brassica napus HOM05D000489 ORTHO05D000372 6.6e-09 65.5 65 44.6
TWI60G0930 Tripterygium wilfordii HOM05D014780 ORTHO05D010368 6.6e-09 65.5 220 27.7
CsaV3_7G028570 Cucumis sativus L. HOM05D029525 ORTHO05D010368 8.7e-09 65.1 246 25.6
QL12p022735 Quercus lobata HOM05D010143 ORTHO05D010368 1.9e-08 63.9 98 36.7
Cfa006554 Carpinus fangiana HOM05D000520 ORTHO05D000399 5.6e-08 62.4 77 42.9
arahy.Tifrunner.gnm1.ann1.2MT6LL Arachis hypogaea HOM05D014780 ORTHO05D010368 7.3e-08 62.0 249 26.5
Potri.013G025300 Populus trichocarpa HOM05D000520 ORTHO05D000399 7.3e-08 62.0 89 39.3
Potri.004G144200 Populus trichocarpa HOM05D010143 ORTHO05D010368 9.6e-08 61.6 78 37.2
Dinv44482 Davidia involucrata HOM05D000520 ORTHO05D000399 1.3e-07 61.2 81 40.7
SGA_v2.0_scaffold39G15363 Striga asiatica HOM05D000520 ORTHO05D000399 1.3e-07 61.2 71 47.9
Thecc.04G122400 Theobroma cacao HOM05D000520 ORTHO05D000399 1.6e-07 60.8 102 36.3
Eucgr.H03592 Eucalyptus grandis HOM05D000520 ORTHO05D000399 2.1e-07 60.5 85 41.2
Lj4g0007031 Lotus japonicus HOM05D010143 ORTHO05D010368 2.8e-07 60.1 261 26.8
Ca_21110_v3 Cicer arietinum L. HOM05D010143 ORTHO05D010368 3.6e-07 59.7 261 26.4
Lsat_1_v5_gn_7_68501 Lactuca sativa HOM05D000520 ORTHO05D000399 3.6e-07 59.7 61 50.8
Sed0025184 Sechium edule HOM05D000520 ORTHO05D000399 3.6e-07 59.7 70 45.7
TPR.G20123 Trifolium pratense HOM05D000520 ORTHO05D000399 3.6e-07 59.7 72 45.8
HPP92_013660 Vanilla planifolia HOM05D000520 ORTHO05D006660 3.6e-07 59.7 63 49.2
HPP92_013678 Vanilla planifolia HOM05D000520 ORTHO05D010009 3.6e-07 59.7 63 49.2
CSS0027010 Camellia sinensis var. sinensis HOM05D030391 ORTHO05D010368 4.8e-07 59.3 74 37.8
CDE01G0254 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 4.8e-07 59.3 72 45.8
Duzib128G1162 Durio zibethinus HOM05D000520 ORTHO05D000399 4.8e-07 59.3 88 37.5
Gohir.D05G383150 Gossypium hirsutum HOM05D009601 ORTHO05D010009 4.8e-07 59.3 86 38.4
Gorai.009G449700 Gossypium raimondii HOM05D009601 ORTHO05D010009 4.8e-07 59.3 86 38.4
Actinidia23478 Actinidia chinensis HOM05D000520 ORTHO05D000399 6.2e-07 58.9 62 51.6
COL.COLO4_13411 Corchorus olitorius HOM05D000520 ORTHO05D011236 6.2e-07 58.9 82 39.0
MELO3C015336.2 Cucumis melo HOM05D000520 ORTHO05D000399 6.2e-07 58.9 71 45.1
Gohir.A04G006350 Gossypium hirsutum HOM05D009601 ORTHO05D010009 6.2e-07 58.9 88 38.6
Manes.15G023400 Manihot esculenta HOM05D000520 ORTHO05D000399 6.2e-07 58.9 81 40.7
PSO017G5822 Papaver somniferum HOM05D000520 ORTHO05D011236 6.2e-07 58.9 85 40.0
Phvul.007G181500 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 6.2e-07 58.9 69 46.4
Sp1g26300 Schrenkiella parvula HOM05D010390 ORTHO05D012282 6.2e-07 58.9 70 35.7
Sed0003129 Sechium edule HOM05D000520 ORTHO05D000399 6.2e-07 58.9 70 45.7
TAR636G3323 Trochodendron aralioides HOM05D000520 ORTHO05D000399 6.2e-07 58.9 70 45.7
VMungo0720G0233 Vigna mungo HOM05D000520 ORTHO05D000399 6.2e-07 58.9 69 46.4
AT1G30473 Arabidopsis thaliana HOM05D010390 ORTHO05D012282 8.1e-07 58.5 235 28.1
FAN07G0772 Fragaria x ananassa HOM05D000520 ORTHO05D000399 8.1e-07 58.5 74 44.6
FAN17G1094 Fragaria x ananassa HOM05D000520 ORTHO05D000399 8.1e-07 58.5 74 44.6
Gohir.D07G179833 Gossypium hirsutum HOM05D000520 ORTHO05D000399 8.1e-07 58.5 82 37.8
Gorai.001G200700 Gossypium raimondii HOM05D000520 ORTHO05D000399 8.1e-07 58.5 82 37.8
Manes.09G164500 Manihot esculenta HOM05D000520 ORTHO05D000399 8.1e-07 58.5 76 38.2
PSO478G1494 Papaver somniferum HOM05D000520 ORTHO05D011236 8.1e-07 58.5 85 40.0
Sabra13G0026500 Salix brachista HOM05D000520 ORTHO05D000399 8.1e-07 58.5 72 44.4
TWI73G0943 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 8.1e-07 58.5 86 38.4
TAR362G0969 Trochodendron aralioides HOM05D000520 ORTHO05D000399 8.1e-07 58.5 74 43.2
Aqoxy2G03274 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 1.1e-06 58.2 81 38.3
Carub.0007s1724 Capsella rubella HOM05D010390 ORTHO05D012282 1.1e-06 58.2 248 24.2
Cfa004858 Carpinus fangiana HOM05D012249 ORTHO05D010368 1.1e-06 58.2 248 27.4
Eucgr.H03576 Eucalyptus grandis HOM05D000520 ORTHO05D000399 1.1e-06 58.2 70 45.7
FAN22G0660 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.1e-06 58.2 74 44.6
Manes.03G184400 Manihot esculenta HOM05D000520 ORTHO05D000399 1.1e-06 58.2 81 40.7
PGR004G1850 Punica granatum HOM05D000520 ORTHO05D000399 1.1e-06 58.2 88 39.8
Solyc01g098760.4 Solanum lycopersicum HOM05D000520 ORTHO05D000399 1.1e-06 58.2 71 43.7
Sopen01g042290 Solanum pennellii HOM05D000520 ORTHO05D000399 1.1e-06 58.2 71 43.7
Thecc.05G306700 Theobroma cacao HOM05D000520 ORTHO05D000399 1.1e-06 58.2 72 41.7
TWI09G0069 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 1.1e-06 58.2 87 37.9
CsaV3_1G039090 Cucumis sativus L. HOM05D000520 ORTHO05D000399 1.4e-06 57.8 71 43.7
Hma1.2p1_0511F.1_g169070 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 1.4e-06 57.8 87 37.9
Lj3C779T2 Lonicera japonica HOM05D000520 ORTHO05D000399 1.4e-06 57.8 67 47.8
Oeu060380.1 Olea europaea HOM05D000520 ORTHO05D000399 1.4e-06 57.8 74 41.9
Phvul.003G092500 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 1.4e-06 57.8 85 40.0
Prupe.1G151700 Prunus persica HOM05D000520 ORTHO05D000399 1.4e-06 57.8 76 40.8
Rhsim04G0206800 Rhododendron simsii HOM05D000520 ORTHO05D000399 1.4e-06 57.8 87 40.2
Actinidia40190 Actinidia chinensis HOM05D000520 ORTHO05D000399 1.8e-06 57.4 92 41.3
arahy.Tifrunner.gnm1.ann1.4A91W2 Arachis hypogaea HOM05D000520 ORTHO05D000399 1.8e-06 57.4 64 48.4
arahy.Tifrunner.gnm1.ann1.BTHT4S Arachis hypogaea HOM05D000520 ORTHO05D000399 1.8e-06 57.4 64 48.4
COL.COLO4_15701 Corchorus olitorius HOM05D000520 ORTHO05D000399 1.8e-06 57.4 64 45.3
Glyma.20G232200 Glycine max HOM05D000520 ORTHO05D000399 1.8e-06 57.4 78 42.3
Manes.08G122800 Manihot esculenta HOM05D000520 ORTHO05D000399 1.8e-06 57.4 72 40.3
Medtr2g022250 Medicago truncatula HOM05D000520 ORTHO05D000399 1.8e-06 57.4 72 44.4
Medtr4g117140 Medicago truncatula HOM05D000520 ORTHO05D000399 1.8e-06 57.4 72 44.4
Medtr4g117220 Medicago truncatula HOM05D000520 ORTHO05D000399 1.8e-06 57.4 72 44.4
Sc19g0004510 Simmondsia chinensis HOM05D000520 ORTHO05D000399 1.8e-06 57.4 71 43.7
Atru.chr4.2566 Acer truncatum HOM05D000520 ORTHO05D000399 2.4e-06 57.0 74 41.9
ClCG03G016850 Citrullus lanatus HOM05D000520 ORTHO05D000399 2.4e-06 57.0 70 44.3
Ciclev10004709m.g Citrus clementina HOM05D000520 ORTHO05D000399 2.4e-06 57.0 81 39.5
Eucgr.B01142 Eucalyptus grandis HOM05D000520 ORTHO05D000399 2.4e-06 57.0 70 48.6
FvH4_4g14520 Fragaria vesca HOM05D000520 ORTHO05D000399 2.4e-06 57.0 74 43.2
FAN12G0085 Fragaria x ananassa HOM05D000520 ORTHO05D000399 2.4e-06 57.0 74 43.2
Glyma.13G208400 Glycine max HOM05D000520 ORTHO05D000399 2.4e-06 57.0 62 50.0
Nitab4.5_0002031g0100 Nicotiana tabacum HOM05D000520 ORTHO05D000399 2.4e-06 57.0 62 45.2
Rhsim13G0022300 Rhododendron simsii HOM05D000563 ORTHO05D000536 2.4e-06 57.0 87 33.3
PGSC0003DMG400033112 Solanum tuberosum HOM05D000520 ORTHO05D000399 2.4e-06 57.0 80 40.0
Thecc.04G222100 Theobroma cacao HOM05D000520 ORTHO05D000399 2.4e-06 57.0 81 39.5
TWI12G0073 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 2.4e-06 57.0 72 38.9
Actinidia21095 Actinidia chinensis HOM05D030391 ORTHO05D010368 3.1e-06 56.6 85 35.3
arahy.Tifrunner.gnm1.ann1.J3K1ST Arachis hypogaea HOM05D000520 ORTHO05D000399 3.1e-06 56.6 62 50.0
CANSAT54G1951 Cannabis sativa HOM05D000520 ORTHO05D000399 3.1e-06 56.6 67 44.8
Ca_21595_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 3.1e-06 56.6 63 49.2
Thhalv10009879m.g Eutrema salsugineum HOM05D010390 ORTHO05D012282 3.1e-06 56.6 70 37.1
Glyma.10G156100 Glycine max HOM05D000520 ORTHO05D000399 3.1e-06 56.6 69 43.5
Gohir.A07G164600 Gossypium hirsutum HOM05D000520 ORTHO05D000399 3.1e-06 56.6 82 36.6
Hma1.2p1_1037F.1_g250580 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 3.1e-06 56.6 62 48.4
MBI19_g02905_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 3.1e-06 56.6 62 46.8
MD04G1208200 Malus domestica HOM05D000520 ORTHO05D000399 3.1e-06 56.6 62 48.4
Nitab4.5_0001643g0070 Nicotiana tabacum HOM05D000520 ORTHO05D000399 3.1e-06 56.6 76 39.5
PGR031G0428 Punica granatum HOM05D000520 ORTHO05D000399 3.1e-06 56.6 70 45.7
QL03p004617 Quercus lobata HOM05D000520 ORTHO05D000399 3.1e-06 56.6 70 41.4
QL03p004799 Quercus lobata HOM05D002900 ORTHO05D003238 3.1e-06 56.6 70 41.4
Solyc01g080070.4 Solanum lycopersicum HOM05D000520 ORTHO05D000399 3.1e-06 56.6 80 38.8
Sopen01g031850 Solanum pennellii HOM05D000520 ORTHO05D000399 3.1e-06 56.6 80 38.8
TWI56G1360 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 3.1e-06 56.6 86 37.2
Aa31LG5G16650 Aethionema arabicum HOM05D000520 ORTHO05D000399 4.0e-06 56.2 76 42.1
arahy.Tifrunner.gnm1.ann1.KQD4NT Arachis hypogaea HOM05D000520 ORTHO05D000399 4.0e-06 56.2 62 50.0
arahy.Tifrunner.gnm1.ann1.S51AWQ Arachis hypogaea HOM05D000520 ORTHO05D000399 4.0e-06 56.2 77 41.6
EL10Ac4g09331 Beta vulgaris HOM05D000520 ORTHO05D000399 4.0e-06 56.2 62 48.4
DCAR_024583 Daucus carota HOM05D000520 ORTHO05D000399 4.0e-06 56.2 80 38.8
Thhalv10020810m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 4.0e-06 56.2 76 39.5
Lalb_Chr13g0304121 Lupinus albus HOM05D000520 ORTHO05D000399 4.0e-06 56.2 62 50.0
MD12G1222200 Malus domestica HOM05D000520 ORTHO05D000399 4.0e-06 56.2 62 48.4
MD16G1184300 Malus domestica HOM05D000520 ORTHO05D000399 4.0e-06 56.2 73 43.8
Nn4g26198 Nelumbo nucifera HOM05D000520 ORTHO05D000399 4.0e-06 56.2 62 48.4
Aqoxy5G02957 Aquilegia oxysepala HOM05D000520 ORTHO05D011236 5.3e-06 55.8 62 45.2
CiPaw.01G160300 Carya illinoinensis HOM05D000520 ORTHO05D000399 5.3e-06 55.8 71 43.7
Psat1g183400 Pisum sativum HOM05D000520 ORTHO05D000399 5.3e-06 55.8 70 44.3
Hund07053 Selenicereus undatus HOM05D000520 ORTHO05D000399 5.3e-06 55.8 78 39.7
GSVIVG01000021001 Vitis vinifera HOM05D000520 ORTHO05D000399 5.3e-06 55.8 75 41.3
arahy.Tifrunner.gnm1.ann1.K1C9AI Arachis hypogaea HOM05D000520 ORTHO05D000399 6.9e-06 55.5 77 41.6
EL10Ac3g06363 Beta vulgaris HOM05D000520 ORTHO05D000399 6.9e-06 55.5 86 37.2
CAN.G274.23 Capsicum annuum HOM05D000520 ORTHO05D000399 6.9e-06 55.5 62 41.9
Cpa.g.sc16.22 Carica papaya HOM05D000520 ORTHO05D000399 6.9e-06 55.5 62 48.4
Ca_00641_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 6.9e-06 55.5 62 48.4
Duzib106G1970 Durio zibethinus HOM05D000520 ORTHO05D000399 6.9e-06 55.5 63 44.4
Duzib177G0455 Durio zibethinus HOM05D000520 ORTHO05D000399 6.9e-06 55.5 89 37.1
Lj4g0000467 Lotus japonicus HOM05D000520 ORTHO05D000399 6.9e-06 55.5 62 48.4
Peaxi162Scf00037g00123 Petunia axillaris HOM05D000520 ORTHO05D000399 6.9e-06 55.5 67 40.3
Phvul.006G153400 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 6.9e-06 55.5 62 48.4
Potri.005G036300 Populus trichocarpa HOM05D000520 ORTHO05D000399 6.9e-06 55.5 87 36.8
Potri.008G202800 Populus trichocarpa HOM05D000520 ORTHO05D000399 6.9e-06 55.5 71 43.7
Sabra08G0158700 Salix brachista HOM05D000520 ORTHO05D000399 6.9e-06 55.5 71 43.7
SalBow5G3417 Salvia bowleyana HOM05D000520 ORTHO05D000399 6.9e-06 55.5 74 41.9
SalBow5G3772 Salvia bowleyana HOM05D000520 ORTHO05D000399 6.9e-06 55.5 74 41.9
Sp3g05080 Schrenkiella parvula HOM05D000520 ORTHO05D000399 6.9e-06 55.5 76 38.2
TAR633G0222 Trochodendron aralioides HOM05D002055 ORTHO05D002120 6.9e-06 55.5 74 40.5
unitig_52.g17124 Utricularia gibba HOM05D000520 ORTHO05D006660 6.9e-06 55.5 71 43.7
HPP92_011529 Vanilla planifolia HOM05D000520 ORTHO05D006660 6.9e-06 55.5 114 30.7
VMungo0540G0465 Vigna mungo HOM05D000520 ORTHO05D000399 6.9e-06 55.5 74 43.2
MSTRG.3996 Avicennia marina HOM05D000520 ORTHO05D000399 9.0e-06 55.1 70 44.3
A05p41870 Brassica napus HOM05D000520 ORTHO05D000399 9.0e-06 55.1 74 40.5
CDE04G1387 Ceratophyllum demersum HOM05D000520 ORTHO05D006660 9.0e-06 55.1 71 45.1
CDE12G0659 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 9.0e-06 55.1 65 46.2
Duzib212G0287 Durio zibethinus HOM05D000520 ORTHO05D000399 9.0e-06 55.1 74 40.5
Glyma.07G257300 Glycine max HOM05D000520 ORTHO05D000399 9.0e-06 55.1 62 48.4
Glyma.15G104400 Glycine max HOM05D000520 ORTHO05D000399 9.0e-06 55.1 89 38.2
Glyma.19G236700 Glycine max HOM05D000520 ORTHO05D000399 9.0e-06 55.1 67 43.3
Gohir.A11G263600 Gossypium hirsutum HOM05D000520 ORTHO05D000399 9.0e-06 55.1 64 40.6
Gohir.D11G273800 Gossypium hirsutum HOM05D000520 ORTHO05D000399 9.0e-06 55.1 64 40.6
Gorai.007G295300 Gossypium raimondii HOM05D000520 ORTHO05D000399 9.0e-06 55.1 64 40.6
Hma1.2p1_1362F.1_g278200 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 9.0e-06 55.1 72 40.3
Peaxi162Scf00196g01022 Petunia axillaris HOM05D000520 ORTHO05D000399 9.0e-06 55.1 71 42.3
RcHm_v2.0_Chr3g0454261 Rosa chinensis HOM05D000520 ORTHO05D000399 9.0e-06 55.1 62 45.2
Sabra10G0084300 Salix brachista HOM05D000520 ORTHO05D006660 9.0e-06 55.1 84 39.3
PGSC0003DMG400028581 Solanum tuberosum HOM05D000520 ORTHO05D000399 9.0e-06 55.1 71 42.3


User provided reference genes

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