Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 2.4e-47 191.8 97 100.0
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 2.4e-47 191.8 97 100.0
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 2.3e-45 185.3 97 91.8
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 1.3e-29 132.9 97 69.1
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 1.9e-28 129.0 97 70.1
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 4.5e-25 117.9 99 60.6
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 4.2e-23 111.3 90 61.1
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 9.3e-23 110.2 91 62.6
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 1.6e-22 109.4 90 58.9
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 1.0e-21 106.7 97 58.8
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 2.3e-21 105.5 98 58.2
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 3.0e-21 105.1 98 58.2
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 5.1e-21 104.4 88 59.1
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 1.9e-20 102.4 98 56.1
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 2.5e-20 102.1 85 62.4
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 3.3e-20 101.7 97 54.6
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 3.3e-20 101.7 97 54.6
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 5.6e-20 100.9 87 57.5
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 9.6e-20 100.1 84 61.9
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 1.3e-19 99.8 101 53.5
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 1.1e-18 96.7 94 54.3
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 1.4e-18 96.3 97 53.6
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 1.4e-18 96.3 97 52.6
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 3.1e-18 95.1 98 52.0
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 6.9e-18 94.0 99 54.5
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 6.9e-18 94.0 99 53.5
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 9.0e-18 93.6 89 57.3
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 9.0e-18 93.6 88 55.7
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 1.5e-17 92.8 95 53.7
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 2.6e-17 92.0 91 53.8
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.6e-17 92.0 91 53.8
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.6e-17 92.0 91 53.8
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.6e-17 92.0 91 53.8
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.6e-17 92.0 91 53.8
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 7.6e-17 90.5 98 54.1
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 1.0e-16 90.1 94 51.1
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 1.7e-16 89.4 59 72.9
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 1.7e-16 89.4 97 48.5
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 4.9e-16 87.8 91 52.7
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 4.9e-16 87.8 85 54.1
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 3.2e-15 85.1 110 44.5
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 5.5e-15 84.3 112 43.8
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 7.1e-15 84.0 110 43.6
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 7.1e-15 84.0 110 43.6
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 9.3e-15 83.6 111 43.2
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 9.3e-15 83.6 94 47.9
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 1.6e-14 82.8 98 48.0
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 2.1e-14 82.4 92 53.3
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 3.5e-14 81.6 81 53.1
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 6.0e-14 80.9 92 52.2
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 7.9e-14 80.5 87 51.7
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 7.9e-14 80.5 110 42.7
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 1.0e-13 80.1 98 46.9
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 2.3e-13 79.0 88 46.6
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 3.0e-13 78.6 90 51.1
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 3.9e-13 78.2 111 45.9
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 6.7e-13 77.4 100 47.0
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 8.7e-13 77.0 53 73.6
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 8.7e-13 77.0 53 73.6
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 8.7e-13 77.0 95 46.3
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 8.7e-13 77.0 58 65.5
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.1e-12 76.6 102 48.0
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 1.9e-12 75.9 98 45.9
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 2.5e-12 75.5 106 43.4
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 2.5e-12 75.5 94 44.7
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 4.3e-12 74.7 76 55.3
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 5.7e-12 74.3 98 44.9
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 9.7e-12 73.6 106 41.5
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 9.7e-12 73.6 106 41.5
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 1.6e-11 72.8 106 41.5
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 2.2e-11 72.4 108 41.7
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 2.2e-11 72.4 107 41.1
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 2.2e-11 72.4 107 41.1
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 6.3e-11 70.9 99 41.4
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 6.3e-11 70.9 63 57.1
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 8.2e-11 70.5 88 46.6
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.2e-09 66.6 87 47.1
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 1.2e-09 66.6 99 39.4
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 2.0e-09 65.9 89 46.1
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.2e-08 62.4 90 44.4
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 3.8e-08 61.6 100 39.0
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 2.5e-07 58.9 48 54.2
Glyma.11G208700 Glycine max HOM05D002019 ORTHO05D002150 3.2e-07 58.5 85 42.4
Lalb_Chr05g0223301 Lupinus albus HOM05D002019 ORTHO05D002150 3.2e-07 58.5 57 50.9
Psat7g017680 Pisum sativum HOM05D002019 ORTHO05D002150 4.2e-07 58.2 56 48.2
VMungo0251G1925 Vigna mungo HOM05D002019 ORTHO05D002150 4.2e-07 58.2 51 52.9
SalBow5G0949 Salvia bowleyana HOM05D002019 ORTHO05D002150 5.5e-07 57.8 50 60.0
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 9.3e-07 57.0 86 40.7
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 1.2e-06 56.6 50 58.0
Psat7g017480 Pisum sativum HOM05D002019 ORTHO05D002150 1.2e-06 56.6 56 46.4
Rhsim10G0186200 Rhododendron simsii HOM05D002019 ORTHO05D002150 1.2e-06 56.6 50 58.0
arahy.Tifrunner.gnm1.ann1.TVU1YR Arachis hypogaea HOM05D002019 ORTHO05D002150 1.6e-06 56.2 55 56.4
Cc07_g12670 Coffea canephora HOM05D002019 ORTHO05D002150 1.6e-06 56.2 50 58.0
Hma1.2p1_0430F.1_g151290 Hydrangea macrophylla HOM05D002019 ORTHO05D002150 1.6e-06 56.2 51 52.9
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 1.6e-06 56.2 77 42.9
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 1.6e-06 56.2 48 54.2
Phvul.002G307900 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 2.1e-06 55.8 51 51.0
Atru.chr1.1979 Acer truncatum HOM05D002019 ORTHO05D002150 2.7e-06 55.5 50 58.0
Oeu012515.1 Olea europaea HOM05D002019 ORTHO05D002150 2.7e-06 55.5 50 58.0
TPR.G33508 Trifolium pratense HOM05D002019 ORTHO05D002150 2.7e-06 55.5 46 56.5
arahy.Tifrunner.gnm1.ann1.SQC659 Arachis hypogaea HOM05D002019 ORTHO05D002150 3.6e-06 55.1 50 58.0
arahy.Tifrunner.gnm1.ann1.ZUC4D4 Arachis hypogaea HOM05D002019 ORTHO05D002150 3.6e-06 55.1 50 58.0
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 3.6e-06 55.1 50 56.0
arahy.Tifrunner.gnm1.ann1.EZ0DFJ Arachis hypogaea HOM05D002019 ORTHO05D002150 4.6e-06 54.7 55 54.5
Medtr6g090460 Medicago truncatula HOM05D002019 ORTHO05D002150 4.6e-06 54.7 50 52.0
Psat1g050120 Pisum sativum HOM05D002019 ORTHO05D002150 4.6e-06 54.7 52 46.2
Ah.09g230520 Amaranthus hybridus HOM05D002019 ORTHO05D002150 6.1e-06 54.3 53 49.1
Lj6g0022787 Lotus japonicus HOM05D002019 ORTHO05D002150 6.1e-06 54.3 50 54.0
Phvul.006G085800 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 6.1e-06 54.3 50 54.0
PGR142G1562 Punica granatum HOM05D002019 ORTHO05D002150 6.1e-06 54.3 87 34.5
TAR383G0675 Trochodendron aralioides HOM05D002019 ORTHO05D002150 6.1e-06 54.3 51 52.9
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 7.9e-06 53.9 86 39.5
CiPaw.03G078600 Carya illinoinensis HOM05D002019 ORTHO05D002150 7.9e-06 53.9 50 56.0
Dinv36721 Davidia involucrata HOM05D002019 ORTHO05D002150 7.9e-06 53.9 51 51.0
Glyma.02G239800 Glycine max HOM05D002019 ORTHO05D002150 7.9e-06 53.9 50 58.0
Medtr8g102350 Medicago truncatula HOM05D002019 ORTHO05D002150 7.9e-06 53.9 57 49.1
TWI74G0642 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 7.9e-06 53.9 58 53.4
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 7.9e-06 53.9 51 47.1


User provided reference genes

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