Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.1e-169 599.0 302 100.0
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.4e-165 586.3 302 98.7
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.4e-162 576.2 302 96.0
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.9e-143 512.7 303 84.8
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 2.7e-137 492.3 305 80.7
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.3e-102 377.1 280 65.0
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 1.9e-98 363.2 291 60.1
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 5.2e-96 355.1 287 59.9
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 2.6e-95 352.8 289 59.5
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 9.8e-95 350.9 312 55.1
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 9.8e-95 350.9 279 61.3
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 9.8e-95 350.9 312 54.5
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 2.8e-94 349.4 295 57.3
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 8.3e-94 347.8 310 55.2
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.1e-93 347.4 304 56.9
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.1e-93 347.4 287 57.8
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.1e-93 345.5 306 54.6
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 9.1e-93 344.4 306 54.9
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 9.1e-93 344.4 303 56.4
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.2e-92 344.0 308 54.2
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 1.2e-92 344.0 298 57.4
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.6e-92 343.6 291 57.4
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 1.6e-92 343.6 289 59.9
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 1.6e-92 343.6 281 58.4
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.5e-92 342.4 306 54.2
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 3.5e-92 342.4 302 56.3
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 4.5e-92 342.0 309 52.4
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 4.5e-92 342.0 288 56.9
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 7.7e-92 341.3 292 56.5
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 7.7e-92 341.3 281 59.1
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 7.7e-92 341.3 313 55.9
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 1.3e-91 340.5 316 53.5
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.7e-91 340.1 308 55.2
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 1.7e-91 340.1 309 52.4
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 2.2e-91 339.7 292 56.8
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 2.9e-91 339.3 308 53.6
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 3.8e-91 339.0 310 53.9
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 6.5e-91 338.2 307 53.7
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 6.5e-91 338.2 310 54.2
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 8.5e-91 337.8 305 52.8
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.1e-90 337.4 295 54.6
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 1.1e-90 337.4 315 53.7
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.5e-90 337.0 312 52.9
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 3.2e-90 335.9 303 54.5
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 3.2e-90 335.9 307 55.0
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 3.2e-90 335.9 281 58.0
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 4.2e-90 335.5 268 58.6
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 5.5e-90 335.1 302 55.0
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 9.4e-90 334.3 306 53.6
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 9.4e-90 334.3 308 53.2
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 9.4e-90 334.3 268 58.2
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.2e-89 334.0 305 54.1
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.6e-89 333.6 306 51.6
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 2.1e-89 333.2 311 53.7
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 2.1e-89 333.2 312 53.5
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 2.7e-89 332.8 294 54.8
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 2.7e-89 332.8 306 52.3
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 2.7e-89 332.8 284 55.3
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 3.6e-89 332.4 268 58.2
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 4.7e-89 332.0 309 55.0
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 8.0e-89 331.3 300 53.7
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 1.4e-88 330.5 303 53.8
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 1.8e-88 330.1 294 55.8
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.8e-88 330.1 301 55.1
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.8e-88 330.1 307 53.7
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 3.0e-88 329.3 282 56.0
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 4.0e-88 328.9 312 53.2
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 5.2e-88 328.6 301 53.8
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 5.2e-88 328.6 294 55.8
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.5e-87 327.0 274 58.0
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 2.0e-87 326.6 301 51.2
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 2.6e-87 326.2 311 52.4
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 5.7e-87 325.1 307 53.4
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 7.5e-87 324.7 306 52.9
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 7.5e-87 324.7 306 53.3
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 9.8e-87 324.3 302 54.0
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 1.3e-86 323.9 268 56.7
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 1.3e-86 323.9 268 56.7
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 1.3e-86 323.9 301 51.5
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-86 323.6 270 59.3
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 2.2e-86 323.2 308 51.6
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 2.2e-86 323.2 305 50.8
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.2e-86 323.2 309 51.8
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 8.3e-86 321.2 300 52.7
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.1e-85 320.9 306 52.0
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 1.4e-85 320.5 305 50.5
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-85 320.1 269 59.1
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-85 320.1 269 59.1
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 3.1e-85 319.3 269 56.5
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 3.1e-85 319.3 269 56.5
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.1e-85 319.3 270 58.5
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.1e-85 319.3 270 58.5
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.1e-85 319.3 270 58.9
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 4.1e-85 318.9 270 56.3
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 5.4e-85 318.5 293 53.6
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 7.0e-85 318.2 270 58.5
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 7.0e-85 318.2 294 54.8
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.1e-85 317.8 270 58.5
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.1e-85 317.8 270 58.5
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 1.2e-84 317.4 270 56.3
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 1.6e-84 317.0 294 52.4
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 3.5e-84 315.8 290 52.8
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 3.5e-84 315.8 270 58.1
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 5.9e-84 315.1 295 53.9
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 1.0e-83 314.3 291 54.0
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.7e-83 313.5 288 53.5
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 2.9e-83 312.8 293 53.2
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.0e-81 304.7 269 58.0
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 8.0e-81 304.7 320 49.4
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.0e-80 304.3 293 52.2
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 2.2e-78 296.6 239 58.2
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 6.4e-78 295.0 282 51.4
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 4.1e-77 292.4 373 44.2
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 4.1e-77 292.4 257 55.3
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 9.2e-77 291.2 235 57.0
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 4.6e-76 288.9 308 49.7
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.7e-75 287.0 228 58.8
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 2.3e-75 286.6 256 54.7
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 8.6e-75 284.6 298 48.0
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 8.6e-75 284.6 290 49.3
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 8.9e-72 274.6 305 46.6
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 1.5e-71 273.9 310 45.8
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 5.8e-71 271.9 277 46.9
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 4.6e-68 262.3 196 61.2
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 3.3e-66 256.1 316 44.9
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 7.3e-66 255.0 219 53.4
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 2.3e-64 250.0 306 46.1
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.5e-63 245.0 205 58.5
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 2.2e-62 243.4 311 43.7
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 5.4e-61 238.8 146 78.1
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 1.6e-60 237.3 185 59.5
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.9e-59 232.6 212 51.9
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 5.6e-50 202.2 308 39.6
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 9.9e-47 191.4 149 57.7
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 1.8e-40 170.6 170 47.1
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 6.0e-36 155.6 162 51.2
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 1.5e-34 151.0 126 60.3
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 2.1e-28 130.6 163 42.3
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 8.7e-27 125.2 125 46.4
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 2.4e-24 117.1 277 30.7
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 2.2e-22 110.5 284 29.6
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 7.1e-21 105.5 281 28.1
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 1.8e-19 100.9 315 26.7
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.1e-18 98.2 83 59.0
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.9e-18 97.4 77 54.5
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 6.9e-16 89.0 71 54.9
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 2.3e-11 73.9 230 30.9
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 6.7e-11 72.4 273 25.6
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 3.3e-10 70.1 203 28.1
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.3e-10 70.1 212 29.2
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 5.7e-10 69.3 212 28.3
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.3e-09 68.2 212 28.8
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 1.6e-09 67.8 262 26.3
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.2e-09 67.4 44 68.2
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 2.2e-09 67.4 52 55.8
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 4.8e-09 66.2 49 51.0
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 8.2e-09 65.5 157 31.2
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.1e-08 65.1 67 53.7
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 6.9e-08 62.4 46 58.7
Cre10.g429601 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D139820 9.0e-08 62.0 167 26.3
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 2.0e-07 60.8 53 54.7
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 4.5e-07 59.7 255 26.3
Pp3c8_2710 Physcomitrium patens HOM05D004773 ORTHO05D005943 5.9e-07 59.3 94 31.9
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 7.7e-07 58.9 130 33.1
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.3e-06 58.2 50 52.0
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 1.3e-06 58.2 141 29.8
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 2.2e-06 57.4 123 36.6


User provided reference genes

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