Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 8.4e-57 223.4 108 100.0
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 8.4e-57 223.4 108 100.0
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 4.8e-36 154.5 76 97.4
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 6.3e-36 154.1 121 67.8
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 1.5e-34 149.4 114 67.5
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 1.0e-33 146.7 115 66.1
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 8.5e-33 143.7 121 64.5
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 4.6e-31 137.9 111 64.9
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 5.5e-24 114.4 103 54.4
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.4e-22 109.8 109 49.5
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.3e-22 109.0 102 55.9
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.1e-21 106.7 96 51.0
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.1e-21 106.7 99 56.6
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 2.0e-21 105.9 102 55.9
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.6e-21 105.5 99 55.6
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 7.4e-21 104.0 107 50.5
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 7.4e-21 104.0 95 51.6
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 9.7e-21 103.6 89 53.9
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 1.7e-20 102.8 118 49.2
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 3.7e-20 101.7 109 49.5
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 6.3e-20 100.9 96 50.0
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 3.1e-19 98.6 98 50.0
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 4.1e-19 98.2 117 46.2
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 4.1e-19 98.2 101 51.5
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 4.1e-19 98.2 114 40.4
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 4.1e-19 98.2 104 48.1
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 5.3e-19 97.8 94 50.0
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 1.2e-18 96.7 113 46.9
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 2.0e-18 95.9 113 43.4
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 2.6e-18 95.5 106 45.3
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 2.6e-18 95.5 99 47.5
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 4.5e-18 94.7 99 48.5
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 5.9e-18 94.4 110 45.5
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 1.0e-17 93.6 92 52.2
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 1.0e-17 93.6 101 48.5
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 1.3e-17 93.2 105 48.6
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 2.2e-17 92.4 110 40.9
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 8.5e-17 90.5 82 52.4
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 1.1e-16 90.1 107 38.3
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.4e-16 89.7 99 47.5
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 9.4e-16 87.0 79 50.6
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.2e-15 86.7 120 44.2
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.2e-15 86.7 87 51.7
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 1.2e-15 86.7 88 51.1
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 1.6e-15 86.3 120 44.2
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.6e-15 86.3 120 44.2
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 2.1e-15 85.9 120 44.2
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.7e-15 85.5 120 45.0
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 2.7e-15 85.5 85 49.4
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 3.6e-15 85.1 107 41.1
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 3.6e-15 85.1 110 39.1
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 4.7e-15 84.7 120 43.3
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 4.7e-15 84.7 100 41.0
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 6.1e-15 84.3 107 41.1
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 6.1e-15 84.3 107 41.1
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 6.1e-15 84.3 107 41.1
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 6.1e-15 84.3 107 41.1
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 6.1e-15 84.3 107 41.1
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 1.0e-14 83.6 99 43.4
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.0e-14 83.6 98 43.9
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 1.4e-14 83.2 111 42.3
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 1.4e-14 83.2 111 42.3
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 1.8e-14 82.8 129 39.5
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.3e-14 82.4 71 52.1
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 3.0e-14 82.0 104 43.3
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 3.0e-14 82.0 111 37.8
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 3.0e-14 82.0 80 46.2
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 3.9e-14 81.6 107 42.1
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 3.9e-14 81.6 107 42.1
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 3.9e-14 81.6 98 38.8
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 5.2e-14 81.3 111 41.4
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 5.2e-14 81.3 119 40.3
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 5.2e-14 81.3 101 44.6
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 6.7e-14 80.9 64 60.9
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.1e-13 80.1 110 42.7
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 1.5e-13 79.7 56 64.3
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 1.5e-13 79.7 53 67.9
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 2.6e-13 79.0 54 59.3
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 2.6e-13 79.0 107 39.3
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.6e-13 79.0 64 54.7
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 2.6e-13 79.0 99 39.4
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 3.3e-13 78.6 86 44.2
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.3e-13 78.6 93 40.9
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 4.4e-13 78.2 85 44.7
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 5.7e-13 77.8 99 43.4
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 7.4e-13 77.4 107 39.3
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 9.7e-13 77.0 107 40.2
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 9.7e-13 77.0 53 60.4
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 9.7e-13 77.0 105 39.0
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 1.3e-12 76.6 52 63.5
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.3e-12 76.6 109 39.4
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 1.7e-12 76.3 107 38.3
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.7e-12 76.3 82 51.2
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 1.7e-12 76.3 90 40.0
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 2.2e-12 75.9 86 44.2
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 2.2e-12 75.9 55 56.4
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 2.2e-12 75.9 74 47.3
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 2.8e-12 75.5 75 45.3
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 4.8e-12 74.7 48 60.4
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 4.8e-12 74.7 58 51.7
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 6.3e-12 74.3 53 60.4
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 8.2e-12 73.9 109 41.3
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 1.1e-11 73.6 42 64.3
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 1.8e-11 72.8 57 56.1
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 1.8e-11 72.8 74 48.6
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 1.8e-11 72.8 105 42.9
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 2.4e-11 72.4 96 40.6
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 3.1e-11 72.0 86 44.2
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 3.1e-11 72.0 64 46.9
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 3.1e-11 72.0 103 41.7
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 4.1e-11 71.6 97 43.3
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 5.3e-11 71.2 104 40.4
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 7.0e-11 70.9 65 47.7
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 9.1e-11 70.5 39 66.7
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.6e-10 69.7 78 38.5
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 3.5e-10 68.6 39 64.1
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 3.5e-10 68.6 53 54.7
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 4.5e-10 68.2 41 61.0
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 7.7e-10 67.4 64 42.2
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 7.7e-10 67.4 55 52.7
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 1.7e-09 66.2 39 64.1
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.2e-09 65.9 66 43.9
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 5.0e-09 64.7 102 39.2
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 6.5e-09 64.3 104 36.5
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 1.1e-08 63.5 56 50.0
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 7.2e-08 60.8 48 50.0
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 2.1e-07 59.3 75 38.7
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 3.6e-07 58.5 90 33.3
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 1.0e-06 57.0 38 60.5
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 1.0e-06 57.0 76 39.5
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 8.8e-06 53.9 30 70.0


User provided reference genes

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