Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 7.1e-37 156.8 79 100.0
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.6e-36 155.6 79 98.7
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 5.8e-31 137.1 79 84.8
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.7e-30 135.6 79 82.3
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 2.9e-30 134.8 79 82.3
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 2.9e-30 134.8 79 82.3
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 3.8e-30 134.4 79 82.3
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 3.8e-30 134.4 79 87.3
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 3.8e-30 134.4 79 81.0
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 6.4e-30 133.7 79 81.0
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 6.4e-30 133.7 79 77.2
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.1e-29 132.9 76 81.6
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.4e-29 132.5 79 77.2
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.9e-29 132.1 77 80.5
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.9e-29 132.1 79 82.3
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.9e-29 132.1 79 81.0
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 4.1e-29 131.0 79 78.5
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 4.1e-29 131.0 78 78.2
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 5.4e-29 130.6 76 84.2
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 5.4e-29 130.6 76 82.9
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 9.2e-29 129.8 79 79.7
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.2e-28 129.4 79 77.2
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.2e-28 129.4 77 77.9
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 78.5
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 2.1e-28 128.6 79 74.7
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 74.7
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 75.9
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 75.9
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 3.5e-28 127.9 79 74.7
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.5e-28 127.9 79 77.2
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 4.6e-28 127.5 79 77.2
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 4.6e-28 127.5 79 75.9
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 6.0e-28 127.1 79 73.4
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 7.8e-28 126.7 79 73.4
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 7.8e-28 126.7 79 72.2
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 7.8e-28 126.7 79 73.4
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 1.0e-27 126.3 76 76.3
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 1.0e-27 126.3 79 73.4
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 1.3e-27 125.9 77 74.0
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 1.3e-27 125.9 79 72.2
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 1.7e-27 125.6 65 95.4
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 73.4
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 74.7
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 2.3e-27 125.2 77 76.6
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 75.9
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 75.9
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 3.0e-27 124.8 79 72.2
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 3.9e-27 124.4 76 75.0
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.9e-27 124.4 79 73.4
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 5.1e-27 124.0 79 72.2
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 6.6e-27 123.6 77 72.7
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 6.6e-27 123.6 79 73.4
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 1.1e-26 122.9 75 72.0
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 1.1e-26 122.9 75 73.3
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 70.9
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 72.2
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 1.9e-26 122.1 75 72.0
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 3.3e-26 121.3 74 77.0
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 3.3e-26 121.3 74 77.0
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 69.6
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 68.4
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.2e-25 119.4 76 72.4
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 1.2e-25 119.4 79 69.6
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.2e-25 119.4 80 72.5
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 1.6e-25 119.0 79 70.9
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.6e-25 119.0 79 64.6
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 2.1e-25 118.6 76 72.4
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 2.8e-25 118.2 79 70.9
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 2.8e-25 118.2 79 70.9
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.8e-25 118.2 79 69.6
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 2.8e-25 118.2 79 68.4
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.6e-25 117.9 75 70.7
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.6e-25 117.9 75 70.7
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 4.7e-25 117.5 78 67.9
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 4.7e-25 117.5 80 71.2
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 63.3
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 69.6
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 68.4
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.1e-24 116.3 77 68.8
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 1.1e-24 116.3 80 70.0
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 101 60.4
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-24 115.9 79 63.3
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.8e-24 115.5 61 90.2
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 64.6
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 2.4e-24 115.2 77 67.5
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 62.0
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 5.2e-24 114.0 61 88.5
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 6.9e-24 113.6 115 54.8
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 1.2e-23 112.8 63 85.7
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 63.3
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 60.8
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 2.0e-23 112.1 79 63.3
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 2.0e-23 112.1 79 67.1
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 4.4e-23 110.9 79 60.8
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 5.8e-23 110.5 78 64.1
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 5.8e-23 110.5 78 64.1
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 5.8e-23 110.5 76 68.4
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 1.3e-22 109.4 79 60.8
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.7e-22 109.0 74 64.9
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.7e-22 109.0 63 81.0
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 2.2e-22 108.6 79 60.8
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.9e-22 108.2 64 78.1
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 3.8e-22 107.8 79 59.5
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 3.8e-22 107.8 76 65.8
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 59.5
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 59.5
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 59.5
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 59.5
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-21 105.9 86 58.1
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.4e-21 105.9 69 66.7
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 1.9e-21 105.5 75 65.3
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 1.9e-21 105.5 75 65.3
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 1.9e-21 105.5 75 65.3
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 1.9e-21 105.5 75 65.3
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 2.4e-21 105.1 78 60.3
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.2e-21 104.8 76 63.2
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 3.2e-21 104.8 70 61.4
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 7.1e-21 103.6 76 63.2
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 9.3e-21 103.2 73 69.9
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 9.3e-21 103.2 76 63.2
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.6e-20 102.4 59 79.7
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 2.7e-20 101.7 57 84.2
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 3.5e-20 101.3 79 59.5
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 3.5e-20 101.3 79 58.2
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 6.0e-20 100.5 76 59.2
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 6.0e-20 100.5 73 61.6
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 6.0e-20 100.5 65 72.3
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 5.1e-19 97.4 54 79.6
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 6.6e-19 97.1 69 62.3
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 1.1e-18 96.3 58 72.4
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.3e-17 92.8 67 58.2
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.6e-17 92.4 66 60.6
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 3.6e-17 91.3 66 56.1
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 1.1e-16 89.7 65 60.0
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 1.4e-16 89.4 65 60.0
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 1.8e-16 89.0 53 69.8
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.8e-16 89.0 73 52.1
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 3.1e-16 88.2 59 62.7
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 4.5e-15 84.3 55 65.5
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 3.5e-12 74.7 56 57.1
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 3.0e-11 71.6 66 53.0
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 5.1e-11 70.9 48 64.6
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 1.1e-10 69.7 66 51.5
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 1.6e-09 65.9 79 39.2
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.7e-09 64.7 72 45.8
FAN18G4143 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-06 55.8 79 44.3


User provided reference genes

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