Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 0.0e+00 1282.3 656 100.0
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 0.0e+00 1275.0 656 99.5
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 0.0e+00 1233.8 657 96.8
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 4.6e-267 924.5 657 73.8
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 5.7e-265 917.5 657 73.4
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 4.5e-230 801.6 657 65.4
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 1.0e-173 614.4 691 50.4
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 2.1e-171 606.7 697 50.9
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 5.8e-169 598.6 702 49.3
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 8.5e-152 541.6 679 47.9
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 1.1e-151 541.2 683 47.4
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 9.4e-151 538.1 673 47.3
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 6.7e-149 531.9 682 45.9
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.5e-148 530.8 672 47.6
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 1.1e-146 524.6 688 45.2
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 6.9e-146 521.9 676 45.6
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 2.0e-145 520.4 673 47.0
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 1.0e-144 518.1 682 45.9
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 2.5e-143 513.5 712 44.2
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.2e-143 513.1 704 45.6
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.4e-143 511.5 663 47.4
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 1.8e-141 507.3 675 45.5
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 2.0e-140 503.8 680 44.6
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.6e-140 503.4 658 46.5
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 7.4e-140 501.9 692 45.2
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 4.8e-139 499.2 677 45.1
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 9.4e-135 485.0 599 47.1
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 3.9e-133 479.6 670 44.0
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 5.9e-129 465.7 667 42.0
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 1.9e-127 460.7 668 42.2
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 9.4e-127 458.4 665 43.2
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 1.0e-125 454.9 669 41.3
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 4.0e-125 453.0 669 43.3
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 5.2e-125 452.6 678 41.0
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 9.7e-124 448.4 676 40.2
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 6.3e-123 445.7 622 44.5
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 1.8e-122 444.1 669 41.6
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 4.5e-121 439.5 684 39.0
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 4.2e-119 433.0 669 39.9
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 2.1e-118 430.6 662 43.4
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 3.6e-118 429.9 519 48.0
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 4.7e-118 429.5 655 41.5
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 4.7e-118 429.5 670 39.9
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.0e-116 424.1 667 41.2
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 2.4e-114 417.2 663 39.7
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 2.4e-114 417.2 697 40.3
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 1.0e-112 411.8 675 39.7
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 1.7e-112 411.0 681 39.8
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 3.8e-112 409.8 650 41.7
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 5.0e-112 409.5 566 44.0
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 1.1e-111 408.3 658 41.2
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 7.2e-111 405.6 679 38.7
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 9.5e-111 405.2 693 39.4
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 2.1e-110 404.1 678 39.8
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.1e-110 404.1 695 39.4
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 3.6e-110 403.3 682 40.2
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 8.0e-110 402.1 685 38.7
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 2.3e-109 400.6 711 38.7
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 4.0e-109 399.8 673 40.1
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 4.0e-109 399.8 675 39.6
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 4.9e-107 392.9 684 39.5
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 4.1e-106 389.8 586 42.0
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 7.0e-106 389.0 640 39.8
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 9.2e-106 388.7 669 39.0
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 2.7e-105 387.1 697 38.6
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 4.5e-105 386.3 647 39.9
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 2.3e-104 384.0 665 38.6
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.6e-102 377.9 581 42.5
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 8.0e-102 375.6 679 37.3
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 1.8e-101 374.4 623 39.6
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 1.8e-101 374.4 634 39.6
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 2.3e-101 374.0 599 40.6
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 7.5e-100 369.0 543 42.7
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 7.5e-100 369.0 651 39.2
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 1.9e-98 364.4 500 44.6
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 1.9e-98 364.4 542 43.0
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 1.6e-97 361.3 662 39.1
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 1.7e-96 357.8 657 37.7
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 1.5e-95 354.8 704 36.6
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 1.3e-91 341.7 744 36.0
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 4.9e-91 339.7 666 36.5
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 2.5e-87 327.4 600 35.7
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 2.1e-86 324.3 667 34.2
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.5e-84 318.2 556 39.6
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 5.4e-82 309.7 659 33.5
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 9.2e-82 308.9 529 39.3
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 2.1e-81 307.8 705 34.3
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 3.0e-80 303.9 426 44.8
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 5.6e-79 299.7 432 44.2
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 1.5e-76 291.6 406 42.9
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.5e-76 291.6 671 34.7
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 8.7e-72 275.8 628 34.4
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 3.1e-69 267.3 705 31.2
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 1.2e-68 265.4 703 31.3
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 1.7e-67 261.5 364 42.6
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 3.0e-64 250.8 688 32.3
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 2.6e-60 237.7 384 40.1
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 3.5e-57 227.3 403 40.2
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 1.3e-54 218.8 315 45.1
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 6.0e-49 199.9 319 38.2
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.6e-44 184.5 195 52.3
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.9e-42 178.3 375 33.9
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 3.7e-30 137.5 137 54.0
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 5.9e-28 130.2 185 42.7
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.3e-22 112.5 143 44.8
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 6.3e-22 110.2 222 33.8
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 8.5e-19 99.8 478 25.7
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 9.4e-18 96.3 93 54.8
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 1.2e-17 95.9 591 22.7
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 5.2e-16 90.5 375 30.7
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.1e-15 89.4 76 59.2
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.1e-15 89.4 76 59.2
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 1.3e-11 75.9 97 45.4
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 6.5e-11 73.6 428 26.2
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 2.6e-07 61.6 72 44.4
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 3.4e-07 61.2 32 84.4
arahy.Tifrunner.gnm1.ann1.G2N9P3 Arachis hypogaea HOM05D000296 ORTHO05D008244 5.7e-07 60.5 38 73.7
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 9.8e-07 59.7 311 27.0
FAN28G0452 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.7e-06 58.9 57 54.4
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 2.2e-06 58.5 407 23.8
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 4.8e-06 57.4 113 31.9


User provided reference genes

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