Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 9.9e-195 683.3 361 100.0
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 3.5e-192 674.9 361 98.9
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 9.6e-182 640.2 337 99.4
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 7.4e-174 614.0 366 86.6
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 1.6e-168 596.3 364 84.3
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 2.5e-161 572.4 392 80.4
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 6.3e-157 557.8 342 86.8
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.2e-144 516.9 368 75.3
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 2.8e-141 505.8 369 73.7
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 8.2e-141 504.2 374 73.0
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 4.1e-140 501.9 354 73.7
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 5.9e-139 498.0 375 75.5
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.8e-138 495.4 377 74.0
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 6.5e-138 494.6 354 74.3
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 3.2e-137 492.3 382 72.3
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 3.2e-137 492.3 377 70.8
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 1.4e-135 486.9 375 70.7
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.4e-135 486.9 376 72.6
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 4.4e-134 481.9 374 69.8
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 1.3e-133 480.3 382 71.2
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 1.7e-133 479.9 377 70.8
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 6.3e-133 478.0 373 71.3
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 1.1e-132 477.2 372 70.4
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.8e-132 476.5 372 70.2
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 4.1e-132 475.3 372 71.8
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 5.4e-132 474.9 372 70.2
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 7.7e-131 471.1 372 69.6
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.3e-130 470.3 348 75.6
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.2e-130 469.5 388 68.0
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 5.0e-130 468.4 423 63.4
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 8.5e-130 467.6 355 71.5
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.5e-129 466.8 374 71.1
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 4.2e-129 465.3 416 65.1
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 4.2e-129 465.3 373 68.1
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 6.1e-128 461.5 376 70.5
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.0e-127 460.7 379 68.6
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.4e-127 460.3 380 65.3
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 1.4e-127 460.3 378 66.1
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 8.8e-127 457.6 368 68.8
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.5e-126 456.8 367 68.4
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 1.3e-125 453.8 368 70.9
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 2.2e-125 453.0 353 69.4
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 2.8e-125 452.6 384 65.4
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 4.9e-125 451.8 377 67.6
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 4.1e-124 448.7 356 68.0
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 9.2e-124 447.6 368 69.6
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.7e-122 443.4 373 65.1
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 2.9e-122 442.6 349 72.5
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 7.3e-121 438.0 350 68.3
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 1.6e-120 436.8 366 69.4
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 2.1e-120 436.4 355 68.5
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 2.8e-120 436.0 352 66.8
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 4.7e-120 435.3 362 66.6
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 5.2e-119 431.8 376 64.6
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 5.2e-119 431.8 386 63.5
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 6.8e-119 431.4 375 63.2
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 8.9e-119 431.0 366 66.1
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 8.9e-119 431.0 376 66.2
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 1.2e-118 430.6 378 66.4
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 2.0e-118 429.9 375 65.9
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 3.4e-118 429.1 415 60.7
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 3.4e-118 429.1 444 58.1
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 3.7e-117 425.6 373 63.8
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 6.4e-117 424.9 374 66.0
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 6.4e-117 424.9 371 68.2
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 8.3e-117 424.5 384 65.4
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.8e-116 423.3 369 66.7
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 4.1e-116 422.2 378 62.2
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 7.0e-116 421.4 377 63.7
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 9.2e-116 421.0 350 67.4
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 9.2e-116 421.0 369 66.4
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.0e-114 417.5 353 64.6
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 1.3e-114 417.2 357 63.6
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 1.7e-114 416.8 371 62.8
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 3.9e-114 415.6 372 68.0
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 5.0e-114 415.2 359 66.6
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 8.6e-114 414.5 371 62.5
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 1.5e-113 413.7 351 64.4
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.9e-113 413.3 350 64.9
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 3.3e-113 412.5 350 64.9
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 2.1e-112 409.8 372 65.9
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 2.1e-112 409.8 351 63.8
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 2.8e-112 409.5 364 66.5
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 1.4e-111 407.1 379 61.7
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 2.3e-111 406.4 371 65.5
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 3.1e-111 406.0 372 62.6
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 6.8e-111 404.8 353 66.0
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 3.4e-110 402.5 425 56.5
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 1.1e-108 397.5 359 61.6
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 9.2e-108 394.4 326 70.6
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 9.2e-108 394.4 378 56.9
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 6.0e-107 391.7 356 62.9
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 1.3e-106 390.6 350 66.3
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 2.8e-104 382.9 365 61.4
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 3.1e-103 379.4 355 62.5
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 4.0e-103 379.0 364 62.6
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 1.7e-101 373.6 273 73.6
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 8.3e-101 371.3 365 57.5
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 1.1e-100 370.9 379 61.7
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 1.4e-100 370.5 365 62.7
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 7.1e-100 368.2 366 59.3
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 9.2e-100 367.9 365 63.0
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 9.2e-100 367.9 365 63.0
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.2e-99 367.5 312 68.9
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.1e-99 366.7 347 61.1
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.7e-99 366.3 341 63.0
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.3e-98 364.0 412 56.3
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.7e-98 363.6 362 59.4
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 3.0e-98 362.8 381 59.3
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 1.1e-95 354.4 351 57.5
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 8.9e-95 351.3 369 60.4
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 4.4e-94 349.0 397 57.7
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 1.7e-93 347.1 343 61.8
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 2.9e-93 346.3 346 58.4
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.4e-92 344.0 275 68.4
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 4.1e-92 342.4 351 59.5
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 1.6e-91 340.5 497 47.3
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 1.7e-90 337.0 345 57.7
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.5e-89 334.0 316 59.8
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 5.6e-89 332.0 378 56.1
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 4.4e-86 322.4 405 50.1
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 2.9e-85 319.7 485 48.9
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 1.1e-84 317.8 275 64.4
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 7.1e-84 315.1 342 55.0
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 5.1e-82 308.9 339 58.4
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 5.6e-81 305.4 408 50.0
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 2.4e-76 290.0 272 63.6
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 6.0e-75 285.4 403 47.1
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 1.8e-74 283.9 405 45.9
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.8e-71 273.9 167 80.2
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.0e-62 243.8 303 56.8
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.0e-62 243.8 303 56.8
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 1.7e-61 240.7 369 47.7
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 3.8e-61 239.6 250 58.0
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 9.6e-57 224.9 222 55.9
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 6.1e-51 205.7 98 96.9
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 3.7e-48 196.4 188 65.4
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.7e-48 196.4 99 93.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.7e-48 196.4 99 93.9
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 2.0e-46 190.7 301 45.2
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 6.5e-45 185.7 229 47.6
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 6.5e-45 185.7 688 29.4
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 3.3e-41 173.3 219 56.2
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 4.4e-41 172.9 93 88.2
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 9.1e-39 165.2 198 54.5
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 3.4e-38 163.3 208 51.0
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.1e-31 141.7 87 81.6
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 5.3e-31 139.4 177 54.2
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 2.6e-30 137.1 353 33.4
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 9.4e-28 128.6 71 81.7
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 4.4e-25 119.8 84 72.6
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.8e-23 114.4 94 56.4
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 5.3e-23 112.8 83 56.6
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 7.7e-22 109.0 65 78.5
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 1.3e-21 108.2 166 44.0
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 3.6e-19 100.1 76 61.8
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 4.4e-17 93.2 63 68.3
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 7.5e-09 65.9 74 50.0
TWI15G0530 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.8e-07 61.2 47 66.0
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 7.8e-06 55.8 38 68.4


User provided reference genes

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