Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.0e-98 360.9 223 100.0
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 7.1e-26 121.7 59 94.9
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 5.6e-23 112.1 66 75.8
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 9.0e-21 104.8 130 44.6
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 1.2e-20 104.4 59 81.4
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 2.0e-20 103.6 59 81.4
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 5.8e-20 102.1 59 78.0
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.7e-19 100.5 66 69.7
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.7e-19 100.5 66 68.2
Gohir.D03G060100 Gossypium hirsutum HOM05D007704 ORTHO05D009758 1.1e-18 97.8 255 51.4
Gorai.003G063900 Gossypium raimondii HOM05D007704 ORTHO05D009758 2.4e-18 96.7 255 50.2
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 1.6e-17 94.0 59 72.9
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 2.7e-17 93.2 59 71.2
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.7e-17 93.2 66 63.6
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 3.5e-17 92.8 59 72.9
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 7.9e-17 91.7 59 72.9
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 2.3e-16 90.1 59 71.2
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 6.7e-16 88.6 61 73.8
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.1e-15 87.8 59 67.8
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.5e-15 87.4 59 69.5
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 5.6e-15 85.5 59 64.4
Gorai.011G136500 Gossypium raimondii HOM05D007704 ORTHO05D004724 1.3e-14 84.3 162 45.1
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 1.6e-14 84.0 59 69.5
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 2.8e-14 83.2 59 64.4
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 3.7e-14 82.8 54 66.7
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.7e-14 82.8 54 66.7
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.7e-14 82.8 54 66.7
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.7e-14 82.8 54 66.7
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 3.7e-14 82.8 54 66.7
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.4e-13 80.9 54 64.8
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.0e-13 79.3 148 35.8
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.5e-12 77.4 153 43.1
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 2.6e-12 76.6 59 64.4
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 3.4e-12 76.3 136 36.0
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 5.8e-12 75.5 63 54.0
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.0e-11 74.7 41 73.2
PGR044G0901 Punica granatum HOM05D004463 ORTHO05D004724 1.0e-11 74.7 56 62.5
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.9e-11 73.2 48 64.6
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 3.8e-11 72.8 56 62.5
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 3.8e-11 72.8 56 62.5
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 2.1e-09 67.0 36 75.0
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 2.7e-09 66.6 58 62.1
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 3.5e-09 66.2 61 57.4
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.6e-09 65.9 59 64.4
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 1.0e-08 64.7 61 54.1
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.3e-08 64.3 59 61.0
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 1.3e-08 64.3 57 54.4
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 1.3e-08 64.3 57 54.4
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 1.8e-08 63.9 48 56.2
Sc19g0006390 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.8e-08 63.9 30 83.3
Hma1.2p1_0067F.1_g037090 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 2.3e-08 63.5 106 34.9
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 2.3e-08 63.5 42 66.7
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 2.3e-08 63.5 45 60.0
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.0e-08 63.2 124 33.1
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 3.9e-08 62.8 61 52.5
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 5.1e-08 62.4 60 51.7
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.1e-08 62.4 42 66.7
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 5.1e-08 62.4 42 66.7
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 5.1e-08 62.4 42 66.7
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.1e-08 62.4 57 57.9
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 6.7e-08 62.0 42 69.0
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 6.7e-08 62.0 43 65.1
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 6.7e-08 62.0 43 65.1
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 6.7e-08 62.0 62 58.1
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 8.7e-08 61.6 49 61.2
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 1.1e-07 61.2 48 58.3
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.1e-07 61.2 42 64.3
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.1e-07 61.2 42 64.3
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.1e-07 61.2 42 64.3
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 1.1e-07 61.2 42 66.7
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 1.1e-07 61.2 42 64.3
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 1.1e-07 61.2 42 64.3
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 1.1e-07 61.2 42 64.3
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.1e-07 61.2 59 57.6
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.5e-07 60.8 42 64.3
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 1.5e-07 60.8 42 64.3
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.5e-07 60.8 42 64.3
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 1.5e-07 60.8 59 54.2
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.5e-07 60.8 43 62.8
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 1.5e-07 60.8 42 64.3
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.5e-07 60.8 42 66.7
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 1.9e-07 60.5 60 51.7
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.9e-07 60.5 57 56.1
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 1.9e-07 60.5 59 54.2
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.9e-07 60.5 38 73.7
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.9e-07 60.5 41 65.9
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 2.5e-07 60.1 56 55.4
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 2.5e-07 60.1 56 55.4
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 2.5e-07 60.1 59 59.3
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 2.5e-07 60.1 42 64.3
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 2.5e-07 60.1 46 63.0
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 3.3e-07 59.7 57 54.4
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 3.3e-07 59.7 42 64.3
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 3.3e-07 59.7 59 54.2
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 4.3e-07 59.3 43 62.8
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 4.3e-07 59.3 42 64.3
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 5.7e-07 58.9 42 61.9
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 7.4e-07 58.5 42 64.3
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 9.6e-07 58.2 45 62.2
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.6e-07 58.2 45 62.2
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.6e-07 58.2 45 62.2
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.6e-07 58.2 45 62.2
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 9.6e-07 58.2 41 63.4
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 9.6e-07 58.2 55 54.5
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 1.3e-06 57.8 42 61.9
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.3e-06 57.8 49 57.1
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.3e-06 57.8 49 57.1
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 1.3e-06 57.8 68 61.8
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.3e-06 57.8 44 56.8
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.6e-06 57.4 42 59.5
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.6e-06 57.4 42 59.5
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.1e-06 57.0 45 57.8
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.1e-06 57.0 42 61.9
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.8e-06 56.6 43 62.8
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.8e-06 56.6 42 59.5
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 3.7e-06 56.2 44 59.1
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 3.7e-06 56.2 44 59.1
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.7e-06 56.2 41 65.9
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 4.8e-06 55.8 38 68.4
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 4.8e-06 55.8 42 57.1
Psat5g004560 Pisum sativum HOM05D004463 ORTHO05D004724 4.8e-06 55.8 59 61.0
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 4.8e-06 55.8 43 58.1
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 4.8e-06 55.8 24 87.5
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 4.8e-06 55.8 44 56.8
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 6.3e-06 55.5 42 57.1
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 6.3e-06 55.5 43 58.1
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 6.3e-06 55.5 44 56.8
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 6.3e-06 55.5 44 56.8
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 6.3e-06 55.5 60 51.7
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 8.2e-06 55.1 42 57.1
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 8.2e-06 55.1 56 53.6


User provided reference genes

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