Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.2e-66 254.6 132 100.0
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 6.9e-61 237.3 126 97.6
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 8.4e-51 203.8 115 87.0
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.6e-49 199.5 115 85.2
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.6e-49 199.5 115 85.2
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.6e-49 199.5 115 85.2
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 4.6e-49 198.0 115 84.3
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 1.0e-48 196.8 115 84.3
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 6.9e-45 184.1 121 73.6
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 1.2e-44 183.3 115 79.1
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.5e-44 183.0 115 78.3
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 1.7e-43 179.5 115 74.8
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 2.9e-43 178.7 115 75.7
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 4.9e-43 177.9 115 75.7
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 4.9e-43 177.9 119 73.9
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 1.9e-42 176.0 115 75.7
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 2.5e-42 175.6 115 73.9
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 3.2e-42 175.3 115 74.8
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 4.2e-42 174.9 115 74.8
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 5.5e-42 174.5 115 75.7
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 7.1e-42 174.1 125 70.4
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 7.1e-42 174.1 115 73.9
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 7.1e-42 174.1 115 71.3
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 9.3e-42 173.7 115 73.0
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.6e-41 172.9 115 71.3
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.6e-41 172.9 115 72.2
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 2.7e-41 172.2 115 73.0
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 3.5e-41 171.8 115 73.0
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 3.5e-41 171.8 115 73.9
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 4.6e-41 171.4 115 72.2
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 6.0e-41 171.0 116 71.6
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 7.9e-41 170.6 115 74.8
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 1.3e-40 169.9 115 73.9
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 1.8e-40 169.5 115 71.3
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 2.3e-40 169.1 114 75.4
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 2.3e-40 169.1 115 70.4
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 3.0e-40 168.7 115 71.3
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 5.1e-40 167.9 115 69.6
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 5.1e-40 167.9 115 71.3
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 8.7e-40 167.2 116 69.0
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 8.7e-40 167.2 115 71.3
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 8.7e-40 167.2 116 70.7
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.1e-39 166.8 115 69.6
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 1.1e-39 166.8 115 68.7
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 1.5e-39 166.4 115 69.6
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 1.5e-39 166.4 115 69.6
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 1.5e-39 166.4 115 70.4
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 1.5e-39 166.4 115 69.6
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 2.5e-39 165.6 115 68.7
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 3.3e-39 165.2 115 68.7
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 3.3e-39 165.2 115 70.4
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 3.3e-39 165.2 116 69.0
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 4.3e-39 164.9 115 69.6
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 4.3e-39 164.9 115 69.6
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 5.7e-39 164.5 115 69.6
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 7.4e-39 164.1 115 69.6
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 7.4e-39 164.1 115 68.7
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 9.7e-39 163.7 115 67.8
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 9.7e-39 163.7 115 67.8
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.6e-38 162.9 115 67.8
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 2.8e-38 162.2 115 68.7
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 2.8e-38 162.2 116 69.0
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 4.8e-38 161.4 115 68.7
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 6.3e-38 161.0 115 68.7
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 6.3e-38 161.0 116 69.0
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 6.3e-38 161.0 116 69.0
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 8.2e-38 160.6 115 68.7
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 8.2e-38 160.6 113 70.8
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 8.2e-38 160.6 116 69.0
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 1.1e-37 160.2 112 68.8
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 1.4e-37 159.8 115 67.8
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 1.4e-37 159.8 116 68.1
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 1.8e-37 159.5 111 70.3
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 3.1e-37 158.7 115 68.7
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 3.1e-37 158.7 115 67.0
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 4.1e-37 158.3 115 67.8
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 5.3e-37 157.9 115 65.2
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 5.3e-37 157.9 116 66.4
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 9.0e-37 157.1 115 64.3
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 9.0e-37 157.1 116 64.7
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 9.0e-37 157.1 115 67.8
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.2e-36 156.8 115 67.0
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.2e-36 156.8 116 64.7
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.2e-36 156.8 115 67.0
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.5e-36 156.4 113 69.0
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 3.4e-36 155.2 115 67.8
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 3.4e-36 155.2 115 67.8
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 4.5e-36 154.8 116 64.7
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 1.0e-35 153.7 116 63.8
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 1.7e-35 152.9 145 57.2
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 2.2e-35 152.5 115 64.3
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 2.2e-35 152.5 115 64.3
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 3.8e-35 151.8 97 77.3
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 5.0e-35 151.4 115 65.2
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 4.2e-34 148.3 115 65.2
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.3e-32 143.3 113 62.8
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 2.3e-32 142.5 116 62.1
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 3.0e-32 142.1 195 43.1
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 3.9e-32 141.7 115 61.7
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 2.2e-30 136.0 124 60.5
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 2.0e-28 129.4 116 56.9
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 1.9e-26 122.9 115 56.5
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 2.3e-24 115.9 149 44.3
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 3.9e-24 115.2 115 53.0
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 2.6e-20 102.4 117 48.7
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 1.0e-19 100.5 115 47.0
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.7e-19 99.8 115 46.1
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 6.5e-19 97.8 115 46.1
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 6.5e-19 97.8 115 46.1
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 6.5e-19 97.8 73 64.4
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 8.5e-19 97.4 115 46.1
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 8.5e-19 97.4 115 46.1
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 8.5e-19 97.4 115 46.1
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 8.5e-19 97.4 115 46.1
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 1.1e-18 97.1 115 46.1
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 1.9e-18 96.3 115 46.1
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 1.8e-16 89.7 115 42.6
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.4e-13 80.1 121 37.2
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 3.1e-13 79.0 111 41.4
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 2.0e-12 76.3 115 39.1
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 5.0e-11 71.6 158 32.9
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 6.7e-08 61.2 51 60.8


User provided reference genes

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