Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.3e-219 766.1 396 100.0
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 4.8e-219 764.2 396 99.7
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 6.5e-216 753.8 396 97.5
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 4.6e-201 704.5 396 90.9
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.9e-200 701.4 396 90.7
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 4.3e-199 698.0 397 91.4
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 2.2e-195 685.6 401 90.0
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 3.8e-179 631.7 399 81.0
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 3.8e-179 631.7 396 82.3
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 3.8e-179 631.7 399 84.2
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 1.1e-178 630.2 396 81.8
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 1.9e-178 629.4 396 83.1
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 7.1e-178 627.5 399 82.2
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 9.2e-178 627.1 399 81.7
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 1.6e-177 626.3 400 81.0
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 2.7e-177 625.5 406 79.1
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.0e-176 623.6 402 80.3
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 3.0e-176 622.1 396 79.8
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 1.1e-175 620.2 402 80.1
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 1.9e-175 619.4 406 78.1
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 5.6e-175 617.8 396 79.5
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 1.2e-174 616.7 401 79.8
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 1.6e-174 616.3 400 82.0
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 4.7e-174 614.8 396 79.5
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 4.7e-174 614.8 397 79.8
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 6.2e-174 614.4 408 79.4
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 8.1e-174 614.0 398 79.6
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.1e-174 614.0 398 79.6
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.2e-173 611.3 398 79.4
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 1.5e-172 609.8 399 77.9
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.6e-172 609.0 397 79.3
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.4e-172 608.6 398 79.1
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.3e-171 606.7 403 78.7
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.7e-171 606.3 398 78.6
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.7e-171 606.3 398 78.6
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.7e-171 606.3 405 79.0
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 2.2e-171 605.9 405 79.3
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 1.1e-170 603.6 398 77.6
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 3.0e-168 595.5 397 76.3
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 1.5e-167 593.2 386 79.5
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 1.9e-167 592.8 397 76.6
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 2.5e-167 592.4 392 77.3
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 7.3e-167 590.9 397 76.3
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 9.6e-167 590.5 383 78.1
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.1e-165 587.0 390 76.2
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 1.1e-165 587.0 398 75.6
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 1.1e-165 587.0 398 75.6
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 1.4e-165 586.6 398 75.4
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 1.5e-164 583.2 340 85.3
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 2.0e-164 582.8 396 75.5
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 2.9e-163 578.9 402 75.6
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 2.9e-163 578.9 402 75.6
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 2.9e-163 578.9 402 75.9
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 3.8e-163 578.6 397 74.3
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 3.8e-163 578.6 509 64.4
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 6.4e-163 577.8 399 75.2
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 1.1e-162 577.0 365 81.4
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.4e-162 576.6 402 75.4
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 3.2e-162 575.5 405 74.6
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 2.7e-161 572.4 396 74.7
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 4.6e-161 571.6 398 73.6
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 6.0e-161 571.2 396 73.7
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 7.9e-161 570.9 393 76.1
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 1.0e-160 570.5 396 75.3
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 1.0e-160 570.5 401 74.1
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 1.3e-160 570.1 406 75.1
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 6.7e-160 567.8 396 73.2
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 1.5e-159 566.6 406 74.1
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 2.5e-159 565.8 405 73.8
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 5.6e-159 564.7 406 73.9
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 5.6e-159 564.7 422 70.9
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 7.4e-159 564.3 407 74.0
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 7.4e-159 564.3 383 74.7
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 1.6e-158 563.1 409 73.6
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 2.1e-158 562.8 397 73.3
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 2.8e-158 562.4 408 73.3
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 2.8e-158 562.4 406 73.6
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 4.8e-158 561.6 409 73.3
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 8.1e-158 560.8 395 74.7
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 1.5e-156 556.6 411 72.0
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 1.5e-156 556.6 392 74.2
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 2.6e-156 555.8 428 70.8
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 4.5e-156 555.1 365 78.4
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 5.8e-156 554.7 396 73.2
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 2.2e-155 552.7 367 74.4
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 4.9e-155 551.6 374 77.0
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 6.4e-155 551.2 354 77.4
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 6.0e-153 544.7 390 71.5
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 7.4e-151 537.7 402 70.6
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.6e-150 536.6 396 70.7
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.0e-148 529.6 398 70.6
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 4.5e-148 528.5 397 70.5
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 8.4e-147 524.2 284 91.9
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 3.2e-146 522.3 395 68.4
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 1.2e-145 520.4 409 67.7
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 2.4e-141 506.1 306 82.7
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 4.1e-141 505.4 306 81.7
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 1.2e-140 503.8 394 69.3
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 1.0e-139 500.7 400 65.5
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 1.0e-131 474.2 362 66.0
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 6.5e-131 471.5 363 68.6
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 2.7e-129 466.1 345 66.4
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.9e-122 443.4 444 56.3
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 1.8e-109 400.2 337 59.9
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 2.2e-86 323.6 246 74.0
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 4.3e-82 309.3 337 55.5
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 5.8e-79 298.9 160 90.6
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 6.4e-78 295.4 263 63.1
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 2.2e-70 270.4 191 68.6
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 8.3e-70 268.5 213 68.1
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 2.8e-65 253.4 228 62.3
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.2e-63 248.1 203 58.6
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 6.6e-59 232.3 260 53.5
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.1e-56 223.4 143 83.2
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 1.3e-54 218.0 230 54.3
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 2.9e-54 216.9 169 72.2
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 7.3e-50 202.2 205 54.6
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 2.0e-47 194.1 110 87.3
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 8.7e-43 178.7 110 77.3
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 8.1e-41 172.2 100 82.0
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 3.1e-40 170.2 350 35.7
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.2e-39 168.3 110 73.6
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 4.5e-39 166.4 134 66.4
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 2.1e-36 157.5 354 30.5
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.8e-35 154.5 166 54.2
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.3e-35 154.1 166 54.2
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.5e-34 151.4 295 32.9
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 2.8e-33 147.1 287 33.1
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 2.6e-23 114.0 78 74.4
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.6e-20 104.8 256 30.9
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.6e-20 103.2 60 83.3
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 6.1e-20 102.8 211 30.8
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 1.0e-19 102.1 66 77.3
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 3.3e-18 97.1 49 91.8
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 3.7e-17 93.6 130 40.8
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 4.8e-17 93.2 75 68.0
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 1.4e-16 91.7 51 80.4
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-16 91.7 53 83.0
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 1.8e-16 91.3 55 80.0
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 4.1e-16 90.1 52 82.7
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 9.1e-16 89.0 80 61.2
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 9.1e-16 89.0 80 61.2
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 4.5e-15 86.7 51 82.4
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.9e-15 86.3 52 80.8
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 5.9e-15 86.3 50 84.0
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 5.9e-15 86.3 194 30.9
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 1.0e-14 85.5 62 66.1
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 8.5e-14 82.4 108 44.4
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.5e-13 80.9 48 81.2
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.5e-13 80.9 48 81.2
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.1e-12 77.8 85 50.6
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.8e-11 74.7 52 59.6
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 9.7e-10 68.9 40 85.0
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 2.2e-09 67.8 38 86.8
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 2.9e-06 57.4 75 45.3


User provided reference genes

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