Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D09G161700 Gossypium hirsutum HOM05D001170 ORTHO05D008741 4.0e-102 374.8 192 100.0
Gorai.006G183400 Gossypium raimondii HOM05D001170 ORTHO05D008741 9.0e-94 347.1 186 95.7
Gohir.A09G166100 Gossypium hirsutum HOM05D001170 ORTHO05D008741 1.2e-90 336.7 186 92.5
Duzib093G1404 Durio zibethinus HOM05D001170 ORTHO05D008741 7.9e-74 280.8 186 76.3
Thecc.05G013600 Theobroma cacao HOM05D001170 ORTHO05D008741 4.0e-70 268.5 186 75.8
COL.COLO4_14511 Corchorus olitorius HOM05D001343 ORTHO05D002008 2.6e-69 265.8 188 74.5
GSVIVG01011178001 Vitis vinifera HOM05D001170 ORTHO05D008741 2.8e-63 245.7 186 66.1
Actinidia05360 Actinidia chinensis HOM05D001170 ORTHO05D008741 2.0e-61 239.6 188 67.6
TAR623G1719 Trochodendron aralioides HOM05D001594 ORTHO05D002862 5.0e-60 235.0 186 66.1
CSS0009561 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D008741 1.2e-58 230.3 186 64.5
Haze_20986 Corylus avellana HOM05D001170 ORTHO05D008741 4.6e-58 228.4 186 66.1
Cfa017188 Carpinus fangiana HOM05D001170 ORTHO05D008741 7.9e-58 227.6 186 65.6
Atru.chr8.2265 Acer truncatum HOM05D001170 ORTHO05D008741 1.8e-57 226.5 179 66.5
Dinv09288 Davidia involucrata HOM05D001170 ORTHO05D008741 3.0e-57 225.7 189 63.0
Prupe.6G279600 Prunus persica HOM05D001170 ORTHO05D008741 6.7e-57 224.6 183 62.3
TWI74G0526 Tripterygium wilfordii HOM05D001170 ORTHO05D008741 8.8e-57 224.2 188 60.6
Ciclev10012321m.g Citrus clementina HOM05D001170 ORTHO05D008741 1.5e-56 223.4 182 62.6
Manes.08G093600 Manihot esculenta HOM05D001170 ORTHO05D008741 2.5e-56 222.6 194 59.3
Cpa.g.sc11.97 Carica papaya HOM05D001170 ORTHO05D008741 3.1e-54 215.7 178 62.4
FAN14G4496 Fragaria x ananassa HOM05D001170 ORTHO05D008741 7.7e-53 211.1 177 64.4
QL07p035137 Quercus lobata HOM05D001170 ORTHO05D008741 2.2e-52 209.5 186 61.3
FvH4_6g11240 Fragaria vesca HOM05D001170 ORTHO05D008741 5.0e-52 208.4 177 63.8
FAN14G2338 Fragaria x ananassa HOM05D001170 ORTHO05D008741 5.0e-52 208.4 177 63.8
Lj2A72T46 Lonicera japonica HOM05D001170 ORTHO05D008741 1.1e-51 207.2 175 63.4
Sabra16G0115100 Salix brachista HOM05D001170 ORTHO05D008741 3.2e-51 205.7 189 58.2
PGSC0003DMG400004454 Solanum tuberosum HOM05D001170 ORTHO05D008741 4.2e-51 205.3 188 57.4
RcHm_v2.0_Chr3g0462751 Rosa chinensis HOM05D001170 ORTHO05D008741 1.2e-50 203.8 177 60.5
FAN09G0318 Fragaria x ananassa HOM05D001170 ORTHO05D008741 3.6e-50 202.2 177 62.1
FAN02G4623 Fragaria x ananassa HOM05D001170 ORTHO05D008741 4.7e-50 201.8 177 61.6
vmacro08884 Vaccinium macrocarpon HOM05D001170 ORTHO05D008741 4.7e-50 201.8 193 59.1
Peaxi162Scf00170g00120 Petunia axillaris HOM05D001170 ORTHO05D008741 6.1e-50 201.4 186 56.5
Aqoxy4G02521 Aquilegia oxysepala HOM05D001170 ORTHO05D008741 1.0e-49 200.7 182 55.5
CAN.G133.10 Capsicum annuum HOM05D001170 ORTHO05D008741 1.4e-49 200.3 186 53.8
Oeu063396.1 Olea europaea HOM05D001170 ORTHO05D008741 3.9e-49 198.7 176 58.0
CiPaw.09G210900 Carya illinoinensis HOM05D001170 ORTHO05D008741 6.7e-49 198.0 187 58.3
Lalb_Chr07g0192391 Lupinus albus HOM05D001170 ORTHO05D008741 6.7e-49 198.0 166 60.8
Potri.016G119200 Populus trichocarpa HOM05D001170 ORTHO05D008741 6.7e-49 198.0 189 57.1
CANSAT35G0043 Cannabis sativa HOM05D001170 ORTHO05D008741 8.8e-49 197.6 189 55.0
Nitab4.5_0000261g0040 Nicotiana tabacum HOM05D001170 ORTHO05D008741 1.5e-48 196.8 187 56.1
Solyc09g005620.4 Solanum lycopersicum HOM05D001170 ORTHO05D008741 1.5e-48 196.8 188 54.8
THA.LOC104805920 Tarenaya hassleriana HOM05D001170 ORTHO05D008741 3.3e-48 195.7 187 58.3
Sopen00g009970 Solanum pennellii HOM05D001170 ORTHO05D008741 9.7e-48 194.1 188 53.7
Sopen09g001520 Solanum pennellii HOM05D001170 ORTHO05D008741 9.7e-48 194.1 188 53.7
Migut.L02023 Erythranthe guttata HOM05D001170 ORTHO05D008741 8.2e-47 191.0 182 56.6
PGR031G0399 Punica granatum HOM05D001170 ORTHO05D008741 1.8e-46 189.9 186 52.7
Sp4g20550 Schrenkiella parvula HOM05D001170 ORTHO05D008741 1.8e-46 189.9 177 55.4
AT2G38270 Arabidopsis thaliana HOM05D001170 ORTHO05D008741 2.4e-46 189.5 188 53.7
CARHR132850 Cardamine hirsuta HOM05D001170 ORTHO05D008741 4.1e-46 188.7 187 56.1
Ca_20220_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.1e-46 188.7 186 57.0
Eucgr.K02975 Eucalyptus grandis HOM05D001170 ORTHO05D008741 5.3e-46 188.3 185 55.1
Glyma.03G056300 Glycine max HOM05D001170 ORTHO05D008741 1.2e-45 187.2 186 53.8
Phvul.010G075900 Phaseolus vulgaris HOM05D001170 ORTHO05D008741 1.2e-45 187.2 186 55.9
CsaV3_3G033600 Cucumis sativus L. HOM05D001170 ORTHO05D008741 2.0e-45 186.4 187 57.8
Glyma.01G119900 Glycine max HOM05D001170 ORTHO05D008741 2.0e-45 186.4 186 55.4
Medtr4g016930 Medicago truncatula HOM05D001170 ORTHO05D008741 2.0e-45 186.4 184 55.4
BcaB01g03712 Brassica carinata HOM05D001170 ORTHO05D008741 3.4e-45 185.7 188 54.3
AL4G35310 Arabidopsis lyrata HOM05D001170 ORTHO05D008741 4.5e-45 185.3 188 54.3
ClCG10G022280 Citrullus lanatus HOM05D001170 ORTHO05D008741 5.9e-45 184.9 187 58.3
Nitab4.5_0013095g0010 Nicotiana tabacum HOM05D001170 ORTHO05D008741 1.0e-44 184.1 187 53.5
Sed0014265 Sechium edule HOM05D001170 ORTHO05D008741 1.3e-44 183.7 189 56.6
Carub.0004s2022 Capsella rubella HOM05D001170 ORTHO05D008741 1.7e-44 183.3 189 53.4
BraA03t11352Z Brassica rapa HOM05D001170 ORTHO05D008741 2.2e-44 183.0 189 54.0
MBI15_g13301_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D008741 2.9e-44 182.6 190 53.2
VMungo0331G0578 Vigna mungo HOM05D001170 ORTHO05D008741 3.8e-44 182.2 186 54.3
arahy.Tifrunner.gnm1.ann1.S2R1T1 Arachis hypogaea HOM05D001170 ORTHO05D008741 6.5e-44 181.4 188 55.3
ECA236G0793 Erigeron canadensis HOM05D001170 ORTHO05D008741 8.5e-44 181.0 183 54.6
AL4G35350 Arabidopsis lyrata HOM05D001170 ORTHO05D008741 1.1e-43 180.6 182 54.4
Lj3g0006921 Lotus japonicus HOM05D001170 ORTHO05D008741 1.1e-43 180.6 186 53.8
Rhsim04G0126900 Rhododendron simsii HOM05D001170 ORTHO05D008741 2.5e-43 179.5 121 66.9
MELO3C009150.2 Cucumis melo HOM05D001170 ORTHO05D008741 3.2e-43 179.1 187 56.7
Psat7g244840 Pisum sativum HOM05D000073 ORTHO05D000033 4.2e-43 178.7 184 52.7
arahy.Tifrunner.gnm1.ann1.FN1A8Q Arachis hypogaea HOM05D001170 ORTHO05D008741 9.4e-43 177.6 188 54.8
Thhalv10017037m.g Eutrema salsugineum HOM05D001170 ORTHO05D008741 1.2e-42 177.2 188 53.2
A03p21110 Brassica napus HOM05D001170 ORTHO05D008741 2.1e-42 176.4 189 52.9
Lsat_1_v5_gn_8_101640 Lactuca sativa HOM05D001170 ORTHO05D008741 2.1e-42 176.4 191 51.8
DCAR_018690 Daucus carota HOM05D001170 ORTHO05D008741 1.4e-41 173.7 187 55.1
BcaC01g05553 Brassica carinata HOM05D001170 ORTHO05D008741 1.8e-41 173.3 189 52.4
C03p25000 Brassica napus HOM05D001170 ORTHO05D008741 1.8e-41 173.3 189 52.4
BolC3t14891H Brassica oleracea HOM05D001170 ORTHO05D008741 1.8e-41 173.3 189 52.4
PSO339G6149 Papaver somniferum HOM05D001170 ORTHO05D008741 2.3e-41 172.9 176 56.2
PSO384G1831 Papaver somniferum HOM05D001170 ORTHO05D008741 3.0e-41 172.6 176 56.2
Cc06_g01160 Coffea canephora HOM05D001170 ORTHO05D008741 5.2e-41 171.8 164 53.7
Aa31LG5G23190 Aethionema arabicum HOM05D001170 ORTHO05D008741 8.8e-41 171.0 191 52.4
MSTRG.18998 Avicennia marina HOM05D001170 ORTHO05D008741 1.5e-40 170.2 189 50.3
SalBow5G4502 Salvia bowleyana HOM05D001170 ORTHO05D008741 3.3e-40 169.1 189 47.6
Sc01g0006910 Simmondsia chinensis HOM05D001170 ORTHO05D008741 9.7e-40 167.5 168 55.4
CDE06G1991 Ceratophyllum demersum HOM05D001170 ORTHO05D008741 8.2e-39 164.5 186 50.5
HanXRQChr11g0331711 Helianthus annuus HOM05D001170 ORTHO05D008741 1.4e-38 163.7 189 50.8
Hund10990 Selenicereus undatus HOM05D001170 ORTHO05D008741 4.1e-38 162.2 195 49.2
ATR0681G276 Amborella trichopoda HOM05D001170 ORTHO05D008741 1.6e-37 160.2 168 54.8
AUR62030807 Chenopodium quinoa HOM05D001170 ORTHO05D008741 2.6e-37 159.5 141 57.4
EL10Ac5g12545 Beta vulgaris HOM05D001343 ORTHO05D002008 5.9e-37 158.3 186 49.5
AUR62030484 Chenopodium quinoa HOM05D001170 ORTHO05D008741 6.5e-36 154.8 197 48.7
unitig_26.g9085 Utricularia gibba HOM05D001170 ORTHO05D008741 3.6e-34 149.1 182 46.2
SEGI_27167 Sequoiadendron giganteum HOM05D001170 ORTHO05D008741 6.7e-33 144.8 182 48.9
HPP92_019010 Vanilla planifolia HOM05D001170 ORTHO05D008741 2.2e-31 139.8 119 51.3
Zm00001eb094310 Zea mays HOM05D001170 ORTHO05D008741 8.5e-28 127.9 167 47.3
Zm00001eb163210 Zea mays HOM05D001170 ORTHO05D008741 3.2e-27 125.9 168 47.6
Mapoly0001s0103 Marchantia polymorpha HOM05D001170 ORTHO05D008741 1.2e-26 124.0 114 48.2
SMO196G0158 Selaginella moellendorffii HOM05D001170 ORTHO05D008741 1.2e-26 124.0 123 48.8
Os12g0175500 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D008741 2.7e-26 122.9 170 46.5
AagrBONN_evm.TU.Sc2ySwM_362.2023 Anthoceros agrestis HOM05D001170 ORTHO05D008741 4.7e-26 122.1 162 42.0
Pp3c14_14790 Physcomitrium patens HOM05D001170 ORTHO05D008741 6.1e-26 121.7 113 50.4
TPR.G3661 Trifolium pratense HOM05D001170 ORTHO05D008741 2.3e-25 119.8 80 68.8
Nn2g10877 Nelumbo nucifera HOM05D001170 ORTHO05D008741 1.7e-23 113.6 132 50.8
Hma1.2p1_0362F.1_g136420 Hydrangea macrophylla HOM05D001170 ORTHO05D008741 2.8e-23 112.8 136 49.3
Peaxi162Scf00170g00007 Petunia axillaris HOM05D001170 ORTHO05D008741 8.3e-23 111.3 79 65.8
TPR.G34421 Trifolium pratense HOM05D001170 ORTHO05D008741 9.1e-22 107.8 128 51.6
CBR_g22937 Chara braunii HOM05D001170 ORTHO05D008741 2.0e-21 106.7 96 49.0
Cre01.g047800 Chlamydomonas reinhardtii HOM05D001170 ORTHO05D008741 1.0e-20 104.4 146 39.0
TPR.G39440 Trifolium pratense HOM05D001170 ORTHO05D008741 6.1e-18 95.1 127 48.0
CDE12G0548 Ceratophyllum demersum HOM05D001170 ORTHO05D008741 2.3e-17 93.2 89 48.3
MCO01G282 Micromonas commoda HOM05D001170 ORTHO05D008741 2.0e-16 90.1 89 46.1
TPR.G20785 Trifolium pratense HOM05D001170 ORTHO05D008741 5.7e-16 88.6 59 66.1
TPR.G40463 Trifolium pratense HOM05D001170 ORTHO05D008741 9.8e-16 87.8 56 69.6
SEGI_12455 Sequoiadendron giganteum HOM05D011033 ORTHO05D015595 4.4e-08 62.4 78 41.0
MD00G1172400 Malus domestica HOM05D001170 ORTHO05D008741 6.4e-07 58.5 31 77.4
SEGI_32474 Sequoiadendron giganteum HOM05D001170 ORTHO05D008741 6.4e-07 58.5 59 42.4
SEGI_34300 Sequoiadendron giganteum HOM05D001654 ORTHO05D008085 6.4e-07 58.5 85 36.5


User provided reference genes

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