Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D09G156950 Gossypium hirsutum HOM05D004714 ORTHO05D005614 1.2e-55 219.5 109 100.0
Gorai.006G178500 Gossypium raimondii HOM05D004714 ORTHO05D005614 1.7e-52 209.1 109 95.4
Gohir.D08G028800 Gossypium hirsutum HOM05D004714 ORTHO05D005614 4.1e-43 177.9 95 91.6
Gohir.A08G018200 Gossypium hirsutum HOM05D004714 ORTHO05D005614 1.2e-42 176.4 95 90.5
Gorai.004G025900 Gossypium raimondii HOM05D004714 ORTHO05D005614 1.2e-37 159.8 125 68.8
Thecc.09G180100 Theobroma cacao HOM05D004714 ORTHO05D005614 9.7e-37 156.8 95 81.1
Duzib168G0788 Durio zibethinus HOM05D004714 ORTHO05D005614 2.8e-36 155.2 95 80.0
MD03G1035800 Malus domestica HOM05D004714 ORTHO05D005614 3.7e-36 154.8 97 75.3
Sabra18G0076900 Salix brachista HOM05D004714 ORTHO05D005614 4.8e-36 154.5 95 77.9
Duzib160G0192 Durio zibethinus HOM05D004714 ORTHO05D005614 8.2e-36 153.7 95 77.9
Ciclev10009101m.g Citrus clementina HOM05D004714 ORTHO05D005614 1.4e-35 152.9 95 76.8
Dinv25399 Davidia involucrata HOM05D004714 ORTHO05D005614 1.4e-35 152.9 95 75.8
QL11p004848 Quercus lobata HOM05D004714 ORTHO05D005614 1.4e-35 152.9 95 74.7
RcHm_v2.0_Chr4g0400661 Rosa chinensis HOM05D004714 ORTHO05D005614 1.4e-35 152.9 95 74.7
Atru.chr7.820 Acer truncatum HOM05D004714 ORTHO05D005614 1.8e-35 152.5 95 76.8
Prupe.1G079700 Prunus persica HOM05D004714 ORTHO05D005614 3.1e-35 151.8 95 75.8
QL08p018134 Quercus lobata HOM05D004714 ORTHO05D005614 3.1e-35 151.8 95 75.8
RcHm_v2.0_Chr4g0400471 Rosa chinensis HOM05D004714 ORTHO05D005614 3.1e-35 151.8 95 74.7
Potri.018G088400 Populus trichocarpa HOM05D004714 ORTHO05D005614 4.1e-35 151.4 95 76.8
CSS0001667 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 7.0e-35 150.6 95 74.7
MD13G1245000 Malus domestica HOM05D004714 ORTHO05D005614 9.1e-35 150.2 95 75.8
RcHm_v2.0_Chr4g0400331 Rosa chinensis HOM05D004714 ORTHO05D005614 1.6e-34 149.4 95 74.7
arahy.Tifrunner.gnm1.ann1.72XQC0 Arachis hypogaea HOM05D004714 ORTHO05D005614 2.0e-34 149.1 95 74.7
FvH4_4g07660 Fragaria vesca HOM05D004714 ORTHO05D005614 2.0e-34 149.1 96 76.0
FAN12G0160 Fragaria x ananassa HOM05D004714 ORTHO05D005614 2.0e-34 149.1 96 76.0
arahy.Tifrunner.gnm1.ann1.ZK581Z Arachis hypogaea HOM05D004714 ORTHO05D005614 3.5e-34 148.3 95 74.7
Haze_14511 Corylus avellana HOM05D004714 ORTHO05D005614 3.5e-34 148.3 95 74.7
FAN07G0359 Fragaria x ananassa HOM05D004714 ORTHO05D005614 3.5e-34 148.3 96 76.0
Sed0009644 Sechium edule HOM05D004714 ORTHO05D005614 4.5e-34 147.9 95 74.7
FAN17G0676 Fragaria x ananassa HOM05D004714 ORTHO05D005614 5.9e-34 147.5 96 75.0
GSVIVG01024342001 Vitis vinifera HOM05D004714 ORTHO05D005614 5.9e-34 147.5 95 72.6
Actinidia25713 Actinidia chinensis HOM05D004714 ORTHO05D005614 7.7e-34 147.1 95 73.7
TAR623G1076 Trochodendron aralioides HOM05D004714 ORTHO05D005614 7.7e-34 147.1 95 74.7
AUR62041230 Chenopodium quinoa HOM05D004714 ORTHO05D005614 1.0e-33 146.7 95 74.7
EL10Ac6g14222 Beta vulgaris HOM05D004714 ORTHO05D005614 2.9e-33 145.2 95 73.7
CsaV3_1G012970 Cucumis sativus L. HOM05D004714 ORTHO05D005614 2.9e-33 145.2 95 72.6
MELO3C005041.2 Cucumis melo HOM05D004714 ORTHO05D005614 3.8e-33 144.8 95 72.6
CANSAT11G1559 Cannabis sativa HOM05D004714 ORTHO05D005614 5.0e-33 144.4 95 71.6
Cpa.g.sc173.21 Carica papaya HOM05D004714 ORTHO05D005614 5.0e-33 144.4 95 72.6
AUR62014206 Chenopodium quinoa HOM05D004714 ORTHO05D005614 5.0e-33 144.4 95 73.7
TWI32G1166 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 5.0e-33 144.4 95 73.7
Sc24g0003530 Simmondsia chinensis HOM05D004714 ORTHO05D005614 6.5e-33 144.1 95 71.6
PGR142G4249 Punica granatum HOM05D004714 ORTHO05D005614 2.5e-32 142.1 101 73.3
Nn3g18335 Nelumbo nucifera HOM05D004714 ORTHO05D005614 3.2e-32 141.7 95 70.5
DCAR_003032 Daucus carota HOM05D004714 ORTHO05D005614 4.2e-32 141.4 95 68.4
HanXRQChr05g0138351 Helianthus annuus HOM05D004714 ORTHO05D005614 4.2e-32 141.4 95 68.4
THA.LOC104802911 Tarenaya hassleriana HOM05D004714 ORTHO05D005614 4.2e-32 141.4 95 68.4
HanXRQChr06g0179551 Helianthus annuus HOM05D004714 ORTHO05D005614 5.5e-32 141.0 91 70.3
TWI34G0504 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 5.5e-32 141.0 95 71.6
Nn4g22433 Nelumbo nucifera HOM05D004714 ORTHO05D005614 7.2e-32 140.6 95 71.6
CARHR271100 Cardamine hirsuta HOM05D004714 ORTHO05D005614 9.4e-32 140.2 95 69.5
AT5G57300 Arabidopsis thaliana HOM05D004714 ORTHO05D005614 1.2e-31 139.8 95 69.5
Thhalv10014276m.g Eutrema salsugineum HOM05D004714 ORTHO05D005614 1.2e-31 139.8 95 69.5
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 1.2e-31 139.8 96 70.8
MBI07_g09259_MAGBIO Magnolia biondii HOM05D004714 ORTHO05D005614 1.2e-31 139.8 96 70.8
AL8G33270 Arabidopsis lyrata HOM05D004714 ORTHO05D005614 2.1e-31 139.0 95 69.5
Eucgr.I01084 Eucalyptus grandis HOM05D004714 ORTHO05D005614 2.1e-31 139.0 97 69.1
Sp6g19030 Schrenkiella parvula HOM05D004714 ORTHO05D005614 2.1e-31 139.0 95 68.4
Cc05_g03940 Coffea canephora HOM05D004714 ORTHO05D005614 2.7e-31 138.7 95 71.6
BcaB08g36090 Brassica carinata HOM05D004714 ORTHO05D005614 4.7e-31 137.9 95 67.4
Ca_12516_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 6.1e-31 137.5 96 68.8
Aqoxy7G03018 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 8.0e-31 137.1 95 67.4
Aqoxy7G03753 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 1.0e-30 136.7 95 67.4
Glyma.08G214400 Glycine max HOM05D004714 ORTHO05D005614 1.0e-30 136.7 96 69.8
PSO541G2874 Papaver somniferum HOM05D004714 ORTHO05D005614 1.0e-30 136.7 95 69.5
CAN.G992.24 Capsicum annuum HOM05D004714 ORTHO05D005614 1.4e-30 136.3 94 70.2
Lalb_Chr01g0012111 Lupinus albus HOM05D004714 ORTHO05D005614 1.4e-30 136.3 99 68.7
C09p49140 Brassica napus HOM05D004714 ORTHO05D005614 1.8e-30 136.0 96 66.7
Carub.0008s1781 Capsella rubella HOM05D004714 ORTHO05D005614 1.8e-30 136.0 95 66.3
PSO675G7537 Papaver somniferum HOM05D004714 ORTHO05D005614 2.3e-30 135.6 95 68.4
BolC9t57763H Brassica oleracea HOM05D004714 ORTHO05D005614 3.0e-30 135.2 96 65.6
Migut.L01902 Erythranthe guttata HOM05D004714 ORTHO05D005614 3.0e-30 135.2 98 68.4
Oeu031756.1 Olea europaea HOM05D004714 ORTHO05D005614 3.0e-30 135.2 95 70.5
VMungo0331G1132 Vigna mungo HOM05D004714 ORTHO05D005614 3.0e-30 135.2 96 68.8
A10p14730 Brassica napus HOM05D004714 ORTHO05D005614 4.0e-30 134.8 96 65.6
BraA10t43556Z Brassica rapa HOM05D004714 ORTHO05D005614 4.0e-30 134.8 96 65.6
ECA236G1620 Erigeron canadensis HOM05D004714 ORTHO05D005614 4.0e-30 134.8 91 65.9
A03p12900 Brassica napus HOM05D004714 ORTHO05D005614 5.2e-30 134.4 97 66.0
Medtr4g009880 Medicago truncatula HOM05D004714 ORTHO05D005614 5.2e-30 134.4 96 67.7
Solyc01g081470.4 Solanum lycopersicum HOM05D004714 ORTHO05D005614 5.2e-30 134.4 95 70.5
SGA_v2.0_scaffold63G21841 Striga asiatica HOM05D004714 ORTHO05D005614 5.2e-30 134.4 98 67.3
BcaC04g19980 Brassica carinata HOM05D004714 ORTHO05D005614 6.8e-30 134.0 96 65.6
Sopen01g033030 Solanum pennellii HOM05D004714 ORTHO05D005614 6.8e-30 134.0 95 69.5
BcaB01g04462 Brassica carinata HOM05D004714 ORTHO05D005614 1.2e-29 133.3 96 66.7
BcaC03g14165 Brassica carinata HOM05D004714 ORTHO05D005614 1.5e-29 132.9 98 65.3
C02p14380 Brassica napus HOM05D004714 ORTHO05D005614 1.5e-29 132.9 98 65.3
Thecc.09G241900 Theobroma cacao HOM05D004714 ORTHO05D005614 1.5e-29 132.9 95 67.4
HPP92_017314 Vanilla planifolia HOM05D004714 ORTHO05D005614 1.5e-29 132.9 72 84.7
MSTRG.10455 Avicennia marina HOM05D004714 ORTHO05D005614 2.0e-29 132.5 97 67.0
COL.COLO4_36489 Corchorus olitorius HOM05D004714 ORTHO05D005614 2.0e-29 132.5 96 68.8
Phvul.010G157500 Phaseolus vulgaris HOM05D004714 ORTHO05D005614 2.6e-29 132.1 96 67.7
Duzib168G1985 Durio zibethinus HOM05D004714 ORTHO05D005614 3.4e-29 131.7 95 66.3
Peaxi162Scf00907g00027 Petunia axillaris HOM05D004714 ORTHO05D005614 3.4e-29 131.7 95 69.5
SalBow4G0136 Salvia bowleyana HOM05D004714 ORTHO05D005614 3.4e-29 131.7 95 69.5
SalBow4G0166 Salvia bowleyana HOM05D004714 ORTHO05D005614 3.4e-29 131.7 95 69.5
Nitab4.5_0006785g0020 Nicotiana tabacum HOM05D004714 ORTHO05D005614 4.4e-29 131.3 95 70.5
CDE02G3847 Ceratophyllum demersum HOM05D004714 ORTHO05D005614 5.7e-29 131.0 95 65.3
PGSC0003DMG400031122 Solanum tuberosum HOM05D004714 ORTHO05D005614 5.7e-29 131.0 95 69.5
ATR0686G131 Amborella trichopoda HOM05D004714 ORTHO05D005614 9.8e-29 130.2 95 65.3
C03p15050 Brassica napus HOM05D004714 ORTHO05D005614 9.8e-29 130.2 96 67.7
BolC3t13947H Brassica oleracea HOM05D004714 ORTHO05D005614 9.8e-29 130.2 96 67.7
Lj3g0005475 Lotus japonicus HOM05D004714 ORTHO05D005614 9.8e-29 130.2 95 64.2
Glyma.07G028400 Glycine max HOM05D004714 ORTHO05D005614 1.3e-28 129.8 96 66.7
BolC2t07562H Brassica oleracea HOM05D004714 ORTHO05D005614 2.8e-28 128.6 90 66.7
Psat7g257720 Pisum sativum HOM05D004714 ORTHO05D005614 2.8e-28 128.6 96 64.6
Aa31LG3G13180 Aethionema arabicum HOM05D004714 ORTHO05D005614 3.7e-28 128.3 103 61.2
BraA02t05930Z Brassica rapa HOM05D004714 ORTHO05D005614 3.7e-28 128.3 91 64.8
BraA03t10598Z Brassica rapa HOM05D004714 ORTHO05D005614 3.7e-28 128.3 97 63.9
TPR.G38676 Trifolium pratense HOM05D004714 ORTHO05D005614 3.7e-28 128.3 96 64.6
Manes.14G158566 Manihot esculenta HOM05D004714 ORTHO05D005614 1.8e-27 125.9 95 65.3
SEGI_34543 Sequoiadendron giganteum HOM05D004714 ORTHO05D005614 1.8e-27 125.9 98 67.3
Os01g0976600 Oryza sativa ssp. japonica HOM05D004714 ORTHO05D005614 2.4e-27 125.6 101 63.4
Zm00001eb398140 Zea mays HOM05D004714 ORTHO05D005614 3.1e-27 125.2 76 72.4
Rhsim05G0122400 Rhododendron simsii HOM05D004714 ORTHO05D005614 5.4e-27 124.4 83 72.3
Lj7A660G39 Lonicera japonica HOM05D004714 ORTHO05D005614 1.2e-26 123.2 146 46.6
Pp3c3_21690 Physcomitrium patens HOM05D004714 ORTHO05D005614 2.7e-26 122.1 71 76.1
unitig_8.g4678 Utricularia gibba HOM05D004714 ORTHO05D005614 3.5e-26 121.7 72 75.0
Nitab4.5_0000792g0180 Nicotiana tabacum HOM05D004714 ORTHO05D005614 4.5e-26 121.3 104 63.5
Lj7C659G12 Lonicera japonica HOM05D004714 ORTHO05D005614 7.7e-26 120.6 73 76.7
vmacro19765 Vaccinium macrocarpon HOM05D004714 ORTHO05D005614 2.3e-25 119.0 64 84.4
Mapoly0052s0093 Marchantia polymorpha HOM05D004714 ORTHO05D005614 1.1e-24 116.7 85 62.4
SMO115G0141 Selaginella moellendorffii HOM05D004714 ORTHO05D005614 7.2e-24 114.0 70 72.9
SHI02880 Sapria himalayana HOM05D004714 ORTHO05D005614 1.6e-23 112.8 68 75.0
RcHm_v2.0_Chr4g0400411 Rosa chinensis HOM05D004714 ORTHO05D005614 3.6e-23 111.7 95 60.0
AagrBONN_evm.TU.Sc2ySwM_117.468 Anthoceros agrestis HOM05D004714 ORTHO05D005614 8.0e-23 110.5 67 73.1
Dinv25435 Davidia involucrata HOM05D004714 ORTHO05D005614 2.6e-21 105.5 62 74.2
ClCG03G002280 Citrullus lanatus HOM05D004714 ORTHO05D005614 1.7e-20 102.8 80 63.8
CBR_g3967 Chara braunii HOM05D004714 ORTHO05D005614 2.8e-20 102.1 67 67.2
COL.COLO4_25457 Corchorus olitorius HOM05D004714 ORTHO05D005614 4.9e-20 101.3 52 86.5
Cre05.g245450 Chlamydomonas reinhardtii HOM05D004714 ORTHO05D005614 1.4e-19 99.8 65 66.2
CiPaw.08G034200 Carya illinoinensis HOM05D004714 ORTHO05D005614 1.8e-19 99.4 52 84.6
CSS0041015 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 7.0e-19 97.4 54 79.6
MCO01G546 Micromonas commoda HOM05D004714 ORTHO05D005614 2.7e-18 95.5 67 64.2
DCAR_002998 Daucus carota HOM05D004714 ORTHO05D005614 1.7e-17 92.8 52 76.9
RcHm_v2.0_Chr4g0400601 Rosa chinensis HOM05D004714 ORTHO05D005614 2.9e-17 92.0 52 78.8
MD16G1253300 Malus domestica HOM05D004714 ORTHO05D005614 1.9e-11 72.8 96 43.8
PRCOL_00006789 Prasinoderma coloniale HOM05D004714 ORTHO05D005614 5.4e-11 71.2 53 62.3
A02p08610 Brassica napus HOM05D004714 ORTHO05D005614 7.0e-11 70.9 37 81.1
Zm00001eb362110 Zea mays HOM05D004714 ORTHO05D005614 3.5e-10 68.6 37 78.4
SGA_v2.0_scaffold905G53712 Striga asiatica HOM05D004714 ORTHO05D005614 5.0e-09 64.7 37 70.3
Haze_26398 Corylus avellana HOM05D004714 ORTHO05D005614 5.6e-08 61.2 48 54.2


User provided reference genes

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