Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 0.0e+00 1098.6 555 100.0
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 0.0e+00 1095.1 555 99.6
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.8e-312 1073.5 558 98.0
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 8.2e-249 863.6 557 81.0
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 6.1e-244 847.4 559 79.6
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 2.3e-243 845.5 558 79.4
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 1.4e-235 819.7 565 76.3
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 1.2e-226 790.0 477 82.2
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.8e-224 782.7 524 78.6
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 3.1e-224 781.9 557 71.3
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 2.3e-222 775.8 562 70.8
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 2.3e-222 775.8 558 71.0
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 2.9e-222 775.4 558 71.1
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.9e-221 772.7 550 71.5
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 8.0e-220 767.3 557 70.0
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 2.0e-218 762.7 499 76.4
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.3e-217 760.0 556 68.9
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 1.3e-217 760.0 560 71.4
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.3e-217 760.0 557 70.0
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 1.7e-217 759.6 550 71.1
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.2e-217 759.2 556 68.9
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 1.8e-216 756.1 485 77.3
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 9.2e-216 753.8 486 75.9
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 2.0e-215 752.7 563 68.2
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 4.6e-215 751.5 477 77.1
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 3.9e-214 748.4 566 67.3
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 5.0e-214 748.0 552 68.8
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 1.1e-213 746.9 548 70.1
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 1.1e-213 746.9 485 76.3
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 5.6e-213 744.6 567 67.7
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 1.2e-212 743.4 491 76.2
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.6e-212 743.0 549 68.5
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 2.1e-212 742.7 551 69.0
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 3.6e-212 741.9 488 74.6
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 3.6e-212 741.9 560 68.8
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 2.3e-211 739.2 481 76.1
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 2.2e-209 732.6 493 73.6
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 2.9e-209 732.3 549 69.2
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 8.3e-209 730.7 553 67.3
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 1.4e-208 729.9 480 73.8
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.2e-207 726.9 537 68.3
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.6e-207 726.5 536 68.5
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 4.6e-207 724.9 493 73.0
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 4.6e-207 724.9 491 73.7
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 1.0e-206 723.8 481 73.8
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 2.3e-206 722.6 475 75.2
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 5.0e-206 721.5 475 74.1
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 6.6e-206 721.1 554 66.1
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.1e-205 720.3 495 72.5
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 2.5e-205 719.2 556 66.2
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 2.5e-205 719.2 548 67.5
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 3.3e-205 718.8 500 73.6
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 3.3e-205 718.8 564 66.5
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 9.5e-205 717.2 487 71.9
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 1.2e-204 716.8 551 66.4
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 2.1e-204 716.1 531 67.8
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 3.6e-204 715.3 490 71.8
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.1e-203 713.8 474 73.4
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 1.4e-203 713.4 558 66.1
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 1.8e-203 713.0 550 66.4
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 2.3e-203 712.6 482 73.0
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 3.1e-203 712.2 557 64.5
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 3.1e-203 712.2 557 66.4
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 4.4e-202 708.4 473 74.0
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 4.4e-202 708.4 473 74.0
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 5.8e-202 708.0 555 64.9
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 7.5e-202 707.6 450 77.6
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 9.9e-202 707.2 478 72.8
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.7e-201 706.4 564 63.8
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 1.7e-201 706.4 490 72.0
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 3.7e-201 705.3 493 70.6
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 6.4e-201 704.5 538 66.2
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 1.1e-200 703.7 492 71.5
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.1e-200 703.7 493 70.4
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.4e-200 703.4 494 71.5
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 1.9e-200 703.0 494 71.5
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 3.2e-200 702.2 569 63.6
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 3.2e-200 702.2 499 68.7
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 4.1e-200 701.8 568 62.9
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 5.4e-200 701.4 494 71.3
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 2.1e-199 699.5 492 70.3
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 4.6e-199 698.4 492 70.3
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.3e-198 696.0 496 69.6
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 3.0e-198 695.7 518 67.0
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 3.3e-197 692.2 492 69.1
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 9.5e-197 690.6 481 71.7
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 9.5e-197 690.6 549 64.8
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 8.1e-196 687.6 492 68.7
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 1.8e-195 686.4 470 71.3
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 2.6e-194 682.6 513 67.6
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 3.4e-194 682.2 538 64.3
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 4.1e-192 675.2 556 62.8
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.1e-191 672.9 422 78.0
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 5.6e-189 664.8 556 61.7
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.2e-188 663.7 446 74.0
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 3.4e-186 655.6 551 61.7
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 4.3e-181 638.6 495 66.7
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 5.6e-181 638.3 494 63.8
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 8.1e-180 634.4 498 63.3
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 5.3e-179 631.7 498 62.9
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 1.2e-178 630.6 547 62.2
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.7e-177 626.7 409 74.1
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 8.4e-177 624.4 497 62.4
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 3.2e-176 622.5 498 64.9
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.1e-171 607.4 463 68.3
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 1.4e-171 607.1 536 57.3
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 6.9e-171 604.7 433 72.1
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 4.6e-167 592.0 466 61.8
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 1.0e-166 590.9 469 61.0
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 3.7e-164 582.4 499 56.9
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 8.7e-158 561.2 471 59.9
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 4.3e-157 558.9 473 61.3
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 1.1e-149 534.3 477 53.7
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.2e-146 524.2 475 54.1
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.3e-145 520.8 482 53.5
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 3.2e-144 516.2 480 55.8
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 9.1e-139 498.0 447 60.0
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 8.2e-132 474.9 372 67.2
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 3.5e-130 469.5 475 47.4
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 1.9e-128 463.8 309 74.4
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.2e-125 454.5 319 71.5
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 7.0e-115 418.7 492 44.9
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 3.5e-114 416.4 494 45.5
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 3.0e-65 253.8 217 59.4
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 3.9e-57 226.9 474 30.8
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 1.9e-51 208.0 142 68.3
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 5.3e-38 163.3 105 73.3
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 1.8e-33 148.3 431 26.2
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 6.5e-28 129.8 72 83.3
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.4e-22 111.3 80 75.0
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 6.7e-17 93.2 415 23.9
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 3.7e-15 87.4 426 26.3
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 1.3e-12 79.0 63 58.7


User provided reference genes

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