Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 1.9e-181 639.0 314 100.0
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 2.3e-179 632.1 314 99.4
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 5.8e-159 564.3 314 88.9
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 2.8e-153 545.4 314 84.7
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 5.8e-151 537.7 314 84.1
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 1.2e-143 513.5 314 84.4
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 1.4e-136 490.0 314 78.3
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 1.1e-133 480.3 314 75.5
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 1.4e-128 463.4 319 72.4
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 1.8e-128 463.0 321 72.6
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 4.5e-127 458.4 309 74.4
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 3.6e-124 448.7 313 72.8
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 8.0e-124 447.6 305 74.8
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 1.0e-123 447.2 280 77.9
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 1.4e-120 436.8 259 79.5
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 1.2e-119 433.7 330 67.0
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 7.7e-119 431.0 314 69.4
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 1.0e-118 430.6 299 71.6
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 2.9e-118 429.1 275 76.4
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 6.5e-118 427.9 313 69.6
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 2.5e-117 426.0 268 77.6
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 5.5e-117 424.9 309 69.3
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 1.2e-116 423.7 268 76.1
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 2.7e-116 422.5 298 71.1
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 3.6e-116 422.2 286 72.4
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 4.7e-116 421.8 320 68.4
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 4.7e-116 421.8 310 66.8
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 8.0e-116 421.0 292 70.5
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 1.0e-115 420.6 301 70.4
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 1.4e-115 420.2 302 69.5
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 1.4e-115 420.2 302 70.2
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 3.0e-115 419.1 272 76.1
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 5.2e-115 418.3 272 75.7
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 3.4e-114 415.6 272 75.4
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 5.7e-114 414.8 272 75.4
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 5.7e-114 414.8 272 75.4
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 9.8e-114 414.1 314 68.5
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 9.8e-114 414.1 271 72.3
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 1.3e-113 413.7 285 70.2
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 1.7e-113 413.3 280 72.5
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 1.7e-113 413.3 269 73.2
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 1.7e-113 413.3 285 70.2
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 4.8e-113 411.8 271 73.8
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 6.3e-113 411.4 272 71.7
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 1.6e-111 406.8 256 75.4
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 2.0e-111 406.4 283 71.0
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 7.7e-111 404.4 259 71.4
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 1.7e-110 403.3 266 72.6
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 2.2e-110 402.9 251 76.5
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 8.5e-110 401.0 260 73.5
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 1.1e-109 400.6 280 69.6
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 1.1e-109 400.6 271 72.3
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 2.5e-109 399.4 329 62.9
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 1.6e-108 396.7 276 70.7
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 6.1e-108 394.8 329 62.3
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 5.2e-107 391.7 259 73.0
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 8.8e-107 391.0 292 66.1
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 8.8e-107 391.0 308 64.6
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 8.8e-107 391.0 274 71.5
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 2.6e-106 389.4 274 69.7
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 4.4e-106 388.7 271 70.1
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 9.8e-106 387.5 264 70.8
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 1.1e-104 384.0 249 72.3
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 1.1e-104 384.0 275 69.1
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 1.8e-104 383.3 304 64.5
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 5.4e-104 381.7 336 59.8
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 1.6e-103 380.2 255 67.8
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 1.6e-103 380.2 287 66.2
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 3.8e-102 375.6 260 67.7
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 3.8e-102 375.6 264 67.4
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 8.6e-102 374.4 249 72.7
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 1.9e-101 373.2 271 69.0
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 2.5e-101 372.9 272 65.1
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 7.2e-101 371.3 292 65.1
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 1.2e-100 370.5 252 67.5
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 2.0e-98 363.2 314 58.3
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 3.4e-98 362.5 227 74.4
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 7.0e-96 354.8 315 58.4
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 1.2e-95 354.0 259 68.0
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 2.7e-95 352.8 350 55.4
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 5.0e-94 348.6 252 65.5
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 6.2e-92 341.7 205 79.5
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 1.0e-91 340.9 299 62.9
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 3.4e-90 335.9 263 62.0
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.9e-89 332.8 240 68.3
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 4.9e-89 332.0 221 74.7
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 6.0e-87 325.1 263 60.5
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 3.9e-86 322.4 289 55.7
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 3.1e-83 312.8 182 83.5
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.5e-82 310.5 218 73.9
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 2.0e-82 310.1 291 56.4
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 3.0e-78 296.2 202 71.8
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 1.8e-75 287.0 169 76.9
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 6.8e-75 285.0 182 74.2
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 1.2e-74 284.3 179 74.3
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 7.6e-74 281.6 255 53.3
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 3.2e-72 276.2 212 64.6
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 3.5e-71 272.7 297 52.9
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 7.8e-71 271.6 187 71.1
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 6.6e-70 268.5 196 67.9
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 2.8e-68 263.1 227 60.4
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 7.6e-58 228.4 150 74.0
Glyma.16G056500 Glycine max HOM05D006526 ORTHO05D008496 2.7e-55 219.9 149 71.8
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 1.3e-49 201.1 247 44.1
Medtr7g034590 Medicago truncatula HOM05D006526 ORTHO05D008496 1.0e-46 191.4 229 47.2
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 5.8e-42 175.6 222 39.2
ECA236G2817 Erigeron canadensis HOM05D006526 ORTHO05D008496 1.2e-39 167.9 141 58.9
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 5.3e-35 152.5 106 70.8
FAN02G2201 Fragaria x ananassa HOM05D002323 ORTHO05D002470 2.9e-33 146.7 144 54.9
QL02p071428 Quercus lobata HOM05D006526 ORTHO05D008496 5.7e-29 132.5 90 74.4
CDE05G0752 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.0e-26 124.0 119 54.6
Medtr6g045607 Medicago truncatula HOM05D006526 ORTHO05D008496 3.8e-25 119.8 73 75.3
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.7e-23 113.6 75 68.0
CSS0005086 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 5.9e-18 95.9 97 57.7
EL10Ac8g19274 Beta vulgaris HOM05D006526 ORTHO05D008496 1.4e-16 91.3 68 66.2
BcaB05g22969 Brassica carinata HOM05D006526 ORTHO05D008496 1.2e-15 88.2 55 76.4
BraA06t24956Z Brassica rapa HOM05D006526 ORTHO05D024464 1.6e-15 87.8 113 46.0
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 1.8e-14 84.3 95 50.5
Ca_12964_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 1.5e-13 81.3 89 52.8
Medtr6g045617 Medicago truncatula HOM05D006526 ORTHO05D008496 2.6e-13 80.5 74 52.7
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 1.7e-12 77.8 86 52.3
CSS0022358 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 8.2e-12 75.5 54 64.8
CSS0047032 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 3.1e-11 73.6 74 50.0
A06p18730 Brassica napus HOM05D006526 ORTHO05D024464 2.0e-10 70.9 94 44.7
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 3.5e-10 70.1 53 64.2
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 1.7e-09 67.8 226 26.5
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 2.2e-09 67.4 211 29.9
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 8.5e-09 65.5 202 27.7
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 1.9e-08 64.3 205 28.3
CDE04G1482 Ceratophyllum demersum HOM05D006526 ORTHO05D003215 1.2e-07 61.6 62 51.6
Cre05.g234657 Chlamydomonas reinhardtii HOM05D004609 ORTHO05D005537 8.0e-07 58.9 195 29.7
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.0e-06 58.5 205 27.8
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.0e-06 58.5 205 27.8
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 1.0e-06 58.5 205 26.3
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 1.8e-06 57.8 197 25.9
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 2.3e-06 57.4 205 27.3


User provided reference genes

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