Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.6e-40 168.3 87 100.0
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.9e-39 164.1 87 97.7
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.9e-38 162.2 87 96.6
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.9e-38 162.2 87 96.6
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 1.7e-36 155.6 82 97.6
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.9e-36 154.5 82 97.6
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 5.0e-36 154.1 84 95.2
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 8.6e-36 153.3 84 95.2
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.2e-34 149.4 82 93.9
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.6e-34 147.9 84 91.7
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 6.6e-28 127.1 84 81.0
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 6.6e-28 127.1 86 81.4
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 9.9e-24 113.2 85 71.8
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 1.0e-20 103.2 86 69.8
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 6.4e-15 84.0 85 54.1
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 1.4e-14 82.8 90 52.2
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 1.2e-13 79.7 84 52.4
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 1.6e-13 79.3 93 49.5
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 2.1e-13 79.0 83 55.4
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 2.7e-13 78.6 85 50.6
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 4.6e-13 77.8 91 49.5
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 6.0e-13 77.4 87 52.9
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 7.8e-13 77.0 85 49.4
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 1.0e-12 76.6 85 51.8
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 1.0e-12 76.6 79 50.6
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 1.7e-12 75.9 90 53.3
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 2.3e-12 75.5 85 50.6
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 2.3e-12 75.5 49 75.5
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 3.9e-12 74.7 86 48.8
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 3.9e-12 74.7 85 49.4
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 5.1e-12 74.3 86 48.8
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 5.1e-12 74.3 80 50.0
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 5.1e-12 74.3 90 51.1
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 5.1e-12 74.3 84 53.6
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 8.7e-12 73.6 84 50.0
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 1.5e-11 72.8 86 50.0
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 2.5e-11 72.0 85 48.2
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 2.5e-11 72.0 83 53.0
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 7.3e-11 70.5 85 45.9
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 1.3e-10 69.7 79 53.2
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 1.3e-10 69.7 84 45.2
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 2.8e-10 68.6 69 53.6
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 2.8e-10 68.6 67 56.7
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 2.8e-10 68.6 90 46.7
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 3.6e-10 68.2 79 45.6
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 4.8e-10 67.8 69 52.2
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 8.1e-10 67.0 98 45.9
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 8.1e-10 67.0 98 45.9
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 1.4e-09 66.2 82 52.4
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.4e-09 65.5 86 48.8
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 2.4e-09 65.5 87 48.3
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 3.1e-09 65.1 100 42.0
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 4.0e-09 64.7 87 48.3
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 6.9e-09 63.9 88 48.9
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 6.9e-09 63.9 84 48.8
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 1.2e-08 63.2 82 50.0
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 1.5e-08 62.8 85 50.6
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 1.5e-08 62.8 85 45.9
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 2.6e-08 62.0 77 44.2
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.4e-08 61.6 84 46.4
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 3.4e-08 61.6 74 48.6
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 4.4e-08 61.2 74 50.0
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 4.4e-08 61.2 99 42.4
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 4.4e-08 61.2 74 50.0
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 5.8e-08 60.8 84 47.6
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 9.9e-08 60.1 92 40.2
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 9.9e-08 60.1 95 43.2
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 1.7e-07 59.3 95 42.1
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 2.2e-07 58.9 92 39.1
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 2.2e-07 58.9 70 50.0
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 2.9e-07 58.5 97 42.3
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 4.9e-07 57.8 58 53.4
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 6.4e-07 57.4 71 46.5
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 1.1e-06 56.6 98 40.8
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 1.1e-06 56.6 85 43.5
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 1.9e-06 55.8 99 41.4
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 2.4e-06 55.5 81 43.2
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 3.2e-06 55.1 84 40.5
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 3.2e-06 55.1 77 45.5
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 3.2e-06 55.1 56 51.8
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 3.2e-06 55.1 90 41.1
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 3.2e-06 55.1 93 43.0
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 4.2e-06 54.7 78 47.4
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 4.2e-06 54.7 59 49.2


User provided reference genes

Program Settings