Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.7e-44 182.2 84 100.0
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 6.3e-44 180.3 84 98.8
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 6.3e-44 180.3 84 98.8
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.5e-40 168.3 84 90.5
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.5e-40 168.3 84 90.5
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 2.5e-40 168.3 84 90.5
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 3.3e-40 167.9 84 90.5
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.3e-40 167.9 84 90.5
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 3.3e-40 167.9 84 90.5
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 4.3e-40 167.5 82 91.5
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 5.6e-40 167.2 84 89.3
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 5.6e-40 167.2 84 91.7
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 3.0e-38 161.4 84 88.1
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 4.0e-38 161.0 84 86.9
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 8.9e-38 159.8 85 88.2
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.2e-37 159.5 82 86.6
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 2.6e-37 158.3 82 85.4
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 2.6e-37 158.3 82 86.6
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 3.4e-37 157.9 84 86.9
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 3.4e-37 157.9 85 87.1
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 4.4e-37 157.5 80 87.5
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 5.7e-37 157.1 82 84.1
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 7.5e-37 156.8 82 85.4
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 9.8e-37 156.4 82 85.4
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 9.8e-37 156.4 83 88.0
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 1.3e-36 156.0 83 86.7
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 1.7e-36 155.6 85 85.9
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 1.7e-36 155.6 85 85.9
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 1.7e-36 155.6 85 85.9
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 1.7e-36 155.6 82 86.6
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 2.2e-36 155.2 82 84.1
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 2.2e-36 155.2 82 84.1
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 2.2e-36 155.2 82 84.1
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 2.2e-36 155.2 82 84.1
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 2.9e-36 154.8 82 84.1
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 2.9e-36 154.8 82 84.1
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.9e-36 154.8 82 84.1
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 3.7e-36 154.5 84 86.9
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 3.7e-36 154.5 85 87.1
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 4.9e-36 154.1 82 84.1
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 4.9e-36 154.1 82 84.1
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 4.9e-36 154.1 82 84.1
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 4.9e-36 154.1 82 84.1
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 4.9e-36 154.1 82 84.1
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 4.9e-36 154.1 82 84.1
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 4.9e-36 154.1 82 84.1
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 4.9e-36 154.1 82 82.9
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 6.4e-36 153.7 82 85.4
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 6.4e-36 153.7 82 84.1
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 6.4e-36 153.7 82 84.1
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 8.3e-36 153.3 80 85.0
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 1.4e-35 152.5 81 85.2
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.4e-35 152.5 84 83.3
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 1.4e-35 152.5 84 84.5
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 1.8e-35 152.1 80 83.8
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 1.8e-35 152.1 84 82.1
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.8e-35 152.1 82 85.4
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 1.8e-35 152.1 79 87.3
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 2.4e-35 151.8 82 84.1
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 2.4e-35 151.8 82 84.1
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 2.4e-35 151.8 82 84.1
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 2.4e-35 151.8 82 84.1
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 2.4e-35 151.8 82 84.1
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 2.4e-35 151.8 82 84.1
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 2.4e-35 151.8 80 83.8
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 2.4e-35 151.8 84 86.9
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 2.4e-35 151.8 84 86.9
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 2.4e-35 151.8 84 86.9
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 2.4e-35 151.8 84 86.9
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 2.4e-35 151.8 82 84.1
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 3.2e-35 151.4 82 81.7
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 4.1e-35 151.0 81 85.2
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 4.1e-35 151.0 84 83.3
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 4.1e-35 151.0 82 84.1
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 4.1e-35 151.0 84 85.7
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 5.4e-35 150.6 82 82.9
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 5.4e-35 150.6 77 85.7
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 7.0e-35 150.2 82 81.7
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 9.2e-35 149.8 82 82.9
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 1.2e-34 149.4 82 82.9
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 1.2e-34 149.4 82 82.9
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 1.6e-34 149.1 79 83.5
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 1.6e-34 149.1 81 85.2
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 1.6e-34 149.1 81 81.5
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 1.6e-34 149.1 82 81.7
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 1.6e-34 149.1 79 84.8
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.0e-34 148.7 82 82.9
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 2.0e-34 148.7 84 81.0
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 2.0e-34 148.7 82 82.9
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 2.0e-34 148.7 82 81.7
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 2.0e-34 148.7 82 81.7
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 2.7e-34 148.3 75 86.7
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 2.7e-34 148.3 78 88.5
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 2.7e-34 148.3 78 88.5
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 2.7e-34 148.3 84 81.0
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 4.6e-34 147.5 75 86.7
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 4.6e-34 147.5 75 86.7
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 5.9e-34 147.1 80 81.2
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 5.9e-34 147.1 78 88.5
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 5.9e-34 147.1 82 81.7
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 1.0e-33 146.4 79 83.5
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.0e-33 146.4 78 83.3
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 1.3e-33 146.0 75 85.3
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 1.3e-33 146.0 81 79.0
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 1.3e-33 146.0 102 68.6
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 1.7e-33 145.6 74 86.5
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 1.7e-33 145.6 82 78.0
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 2.3e-33 145.2 79 82.3
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 3.0e-33 144.8 105 68.6
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 3.0e-33 144.8 78 82.1
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 3.9e-33 144.4 73 89.0
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 5.0e-33 144.1 85 78.8
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 6.6e-33 143.7 86 77.9
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 8.6e-33 143.3 85 78.8
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 8.6e-33 143.3 74 85.1
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 8.6e-33 143.3 78 80.8
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 1.9e-32 142.1 76 81.6
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.1e-31 138.7 69 87.0
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 6.8e-30 133.7 73 86.3
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 8.9e-30 133.3 82 73.2
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 8.9e-30 133.3 63 92.1
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 9.8e-29 129.8 61 91.8
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 1.3e-28 129.4 62 90.3
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 1.3e-28 129.4 62 90.3
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 2.9e-28 128.3 112 60.7
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 3.7e-28 127.9 75 73.3
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 4.9e-28 127.5 61 90.2
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 6.4e-28 127.1 60 90.0
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 2.7e-26 121.7 57 91.2
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.1e-24 116.3 63 84.1
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 8.1e-23 110.2 50 92.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 1.4e-22 109.4 50 92.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 1.4e-22 109.4 50 90.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 5.2e-22 107.5 50 90.0
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.3e-20 102.8 60 81.7
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 1.3e-20 102.8 49 87.8
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 8.3e-20 100.1 82 58.5
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 3.2e-19 98.2 73 60.3
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 1.6e-18 95.9 81 51.9
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 3.5e-18 94.7 80 51.2
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 2.3e-17 92.0 81 50.6
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 4.4e-13 77.8 75 49.3
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 2.1e-07 58.9 29 86.2
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 9.0e-06 53.5 23 87.0


User provided reference genes

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