Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 7.0e-192 673.7 324 100.0
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 6.0e-191 670.6 324 99.4
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 2.8e-188 661.8 324 98.8
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 3.9e-158 561.6 337 80.4
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 6.9e-139 497.7 278 84.5
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 3.5e-122 442.2 317 65.0
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 5.0e-121 438.3 301 68.1
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.9e-120 436.4 305 65.6
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 2.7e-119 432.6 305 64.9
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 4.7e-119 431.8 302 65.6
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 6.1e-119 431.4 301 66.1
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.0e-118 430.6 300 63.3
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 1.4e-118 430.3 303 65.3
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.9e-118 428.7 300 63.3
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 6.7e-118 427.9 298 64.1
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 4.4e-117 425.2 312 62.8
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 4.4e-117 425.2 305 64.9
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 7.4e-117 424.5 306 64.4
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 1.3e-116 423.7 301 64.5
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 2.8e-116 422.5 304 63.2
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 3.7e-116 422.2 304 62.5
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 4.8e-116 421.8 301 62.8
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.1e-115 420.6 301 63.5
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 3.1e-115 419.1 303 62.0
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 3.1e-115 419.1 303 62.7
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 5.3e-115 418.3 301 62.1
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 5.3e-115 418.3 301 62.1
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 1.6e-114 416.8 304 62.2
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.6e-114 416.0 298 63.8
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.6e-114 416.0 303 61.4
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 5.9e-114 414.8 298 62.8
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 7.7e-114 414.5 303 61.4
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 7.7e-114 414.5 300 63.0
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 1.0e-113 414.1 302 62.3
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.0e-113 414.1 303 61.1
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.2e-113 412.9 303 61.1
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.8e-113 412.1 303 61.1
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 3.8e-113 412.1 273 66.7
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 6.5e-113 411.4 311 61.1
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 6.5e-113 411.4 303 61.4
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 1.1e-112 410.6 303 62.7
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 1.1e-112 410.6 307 61.6
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 1.5e-112 410.2 306 60.8
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 1.9e-112 409.8 304 62.5
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 2.5e-112 409.5 305 62.3
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 3.2e-112 409.1 302 60.9
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 3.2e-112 409.1 304 61.2
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 1.2e-111 407.1 273 65.6
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 2.7e-111 406.0 213 85.9
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 4.7e-111 405.2 300 61.3
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 4.7e-111 405.2 274 66.4
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 6.1e-111 404.8 303 60.4
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 8.0e-111 404.4 304 61.5
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 1.0e-110 404.1 322 60.2
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 5.2e-110 401.7 302 61.6
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 6.8e-110 401.4 323 59.8
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 6.8e-110 401.4 302 61.9
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 7.5e-109 397.9 303 61.1
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.3e-108 397.1 290 60.3
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 1.7e-108 396.7 314 60.5
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 1.7e-108 396.7 274 65.7
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.7e-108 396.7 280 63.6
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 8.3e-108 394.4 303 59.1
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 2.4e-107 392.9 274 65.7
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 2.4e-107 392.9 276 67.8
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 1.0e-105 387.5 303 61.1
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 1.7e-105 386.7 273 65.2
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.9e-105 386.0 272 64.3
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.1e-104 384.0 271 62.4
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 1.1e-104 384.0 275 62.5
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 1.9e-104 383.3 305 60.0
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.9e-104 383.3 273 64.5
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 4.2e-104 382.1 280 63.6
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 2.3e-102 376.3 320 57.5
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 8.8e-102 374.4 270 62.2
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 6.3e-100 368.2 306 55.9
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 9.1e-99 364.4 301 54.8
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 4.5e-98 362.1 275 59.3
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.0e-94 350.9 297 54.5
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 1.4e-94 350.5 263 62.4
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 5.2e-94 348.6 341 52.8
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 6.8e-94 348.2 325 53.2
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 8.9e-94 347.8 310 56.8
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 5.7e-93 345.1 283 58.0
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 9.8e-93 344.4 245 60.8
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 3.7e-92 342.4 301 53.2
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 4.9e-92 342.0 337 49.6
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 8.3e-92 341.3 333 49.5
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 1.4e-91 340.5 311 53.7
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 2.9e-89 332.8 270 57.4
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 3.3e-88 329.3 275 55.6
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.6e-87 327.0 279 54.8
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 8.0e-87 324.7 238 60.1
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 1.5e-80 303.9 239 57.7
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 6.2e-79 298.5 329 48.6
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 8.0e-79 298.1 293 50.9
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 1.2e-74 284.3 254 52.8
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 3.5e-74 282.7 216 59.7
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 1.6e-71 273.9 190 68.4
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 2.1e-71 273.5 189 66.7
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 8.1e-71 271.6 190 65.3
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 3.9e-65 252.7 275 45.5
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 1.4e-62 244.2 295 42.7
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 1.8e-62 243.8 179 62.6
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 7.1e-59 231.9 315 40.3
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 1.6e-58 230.7 267 42.3
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 1.3e-57 227.6 190 56.3
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.7e-57 227.3 187 55.6
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 5.6e-56 222.2 287 40.1
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 6.2e-55 218.8 208 54.3
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 2.6e-53 213.4 191 53.4
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 4.9e-52 209.1 279 38.4
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 4.6e-50 202.6 285 39.3
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 1.3e-49 201.1 186 52.2
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 2.1e-47 193.7 309 34.3
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 6.2e-47 192.2 317 33.4
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 6.9e-46 188.7 192 50.5
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 1.5e-45 187.6 278 37.1
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 5.4e-43 179.1 135 63.0
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.6e-42 177.6 117 70.1
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 7.9e-42 175.3 127 63.8
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 3.0e-41 173.3 275 36.7
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 1.5e-40 171.0 128 60.9
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 5.8e-37 159.1 164 50.6
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 2.5e-35 153.7 119 60.5
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 4.2e-35 152.9 119 60.5
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 1.2e-34 151.4 254 31.9
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 1.6e-34 151.0 137 54.0
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 3.9e-33 146.4 219 37.0
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 4.1e-30 136.3 149 49.0
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 4.1e-30 136.3 99 60.6
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 4.1e-30 136.3 119 48.7
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 4.1e-30 136.3 127 50.4
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 1.1e-27 128.3 108 55.6
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.2e-26 124.8 91 59.3
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 1.4e-22 111.3 62 79.0
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 5.3e-22 109.4 184 38.0
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 7.7e-21 105.5 97 54.6
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 3.9e-17 93.2 51 68.6
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 6.7e-17 92.4 65 64.6
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.3e-15 88.2 62 58.1
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 6.9e-14 82.4 73 52.1
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 2.6e-13 80.5 63 60.3
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 5.5e-11 72.8 112 33.9
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 5.1e-09 66.2 70 44.3


User provided reference genes

Program Settings