Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G024900 Gossypium hirsutum HOM05D006633 ORTHO05D008259 2.9e-160 568.5 293 100.0
Gorai.004G020300 Gossypium raimondii HOM05D006633 ORTHO05D008259 4.2e-159 564.7 293 99.3
Gohir.A08G014400 Gossypium hirsutum HOM05D006633 ORTHO05D008259 2.5e-156 555.4 293 96.9
Thecc.09G197800 Theobroma cacao HOM05D006633 ORTHO05D008259 2.2e-128 462.6 285 83.5
Duzib168G0472 Durio zibethinus HOM05D006633 ORTHO05D008259 1.1e-124 450.3 295 80.3
COL.COLO4_35074 Corchorus olitorius HOM05D006633 ORTHO05D008259 1.3e-115 420.2 238 87.8
Ciclev10015880m.g Citrus clementina HOM05D006633 ORTHO05D008259 2.9e-104 382.5 300 69.0
Manes.17G052500 Manihot esculenta HOM05D006633 ORTHO05D008259 1.9e-103 379.8 315 65.7
Potri.003G222900 Populus trichocarpa HOM05D006633 ORTHO05D008259 4.2e-103 378.6 228 83.3
Sabra03G0165800 Salix brachista HOM05D006633 ORTHO05D008259 1.0e-101 374.0 226 81.9
Cpa.g.sc119.27 Carica papaya HOM05D006633 ORTHO05D008259 1.4e-101 373.6 302 65.2
TWI34G2025 Tripterygium wilfordii HOM05D006633 ORTHO05D008259 6.8e-101 371.3 301 65.8
Atru.chr3.2065 Acer truncatum HOM05D006633 ORTHO05D008259 2.2e-99 366.3 272 70.6
QL01p010451 Quercus lobata HOM05D006633 ORTHO05D008259 2.2e-99 366.3 286 67.1
GSVIVG01025500001 Vitis vinifera HOM05D006633 ORTHO05D008259 6.3e-99 364.8 216 82.4
PGR102G1790 Punica granatum HOM05D006633 ORTHO05D008259 9.1e-98 360.9 251 72.5
Lj2A793G3 Lonicera japonica HOM05D006633 ORTHO05D008259 5.9e-97 358.2 216 80.6
Oeu060898.1 Olea europaea HOM05D006633 ORTHO05D008259 1.0e-96 357.5 239 73.2
CiPaw.13G178900 Carya illinoinensis HOM05D006633 ORTHO05D008259 1.7e-96 356.7 216 80.1
Prupe.6G001800 Prunus persica HOM05D006633 ORTHO05D008259 1.7e-96 356.7 237 74.3
THA.LOC104813477 Tarenaya hassleriana HOM05D006633 ORTHO05D008259 2.3e-96 356.3 247 71.7
Cc01_g00320 Coffea canephora HOM05D006633 ORTHO05D008259 3.8e-96 355.5 211 81.5
HanXRQChr14g0437151 Helianthus annuus HOM05D006633 ORTHO05D008259 6.6e-96 354.8 218 78.0
Nn7g35825 Nelumbo nucifera HOM05D006633 ORTHO05D008259 1.9e-95 353.2 298 65.8
Eucgr.B03588 Eucalyptus grandis HOM05D006633 ORTHO05D008259 9.5e-95 350.9 249 71.1
Actinidia00914 Actinidia chinensis HOM05D006633 ORTHO05D008259 1.6e-94 350.1 235 74.0
TAR633G1699 Trochodendron aralioides HOM05D006633 ORTHO05D008259 1.6e-94 350.1 301 63.5
CANSAT11G1927 Cannabis sativa HOM05D006633 ORTHO05D008259 2.1e-94 349.7 295 64.7
CAN.G431.4 Capsicum annuum HOM05D006633 ORTHO05D008259 2.1e-94 349.7 212 80.2
Actinidia16230 Actinidia chinensis HOM05D006633 ORTHO05D008259 6.1e-94 348.2 246 71.5
ECA238G0103 Erigeron canadensis HOM05D006633 ORTHO05D008259 1.0e-93 347.4 251 68.5
MD11G1001800 Malus domestica HOM05D006633 ORTHO05D008259 1.0e-93 347.4 250 72.4
Sopen01g017000 Solanum pennellii HOM05D006633 ORTHO05D008259 1.0e-93 347.4 278 64.4
SGA_v2.0_scaffold3G01722 Striga asiatica HOM05D000412 ORTHO05D000429 1.4e-93 347.1 257 67.7
FAN21G1569 Fragaria x ananassa HOM05D006633 ORTHO05D008259 8.9e-93 344.4 208 81.2
MELO3C014730.2 Cucumis melo HOM05D006633 ORTHO05D008259 1.5e-92 343.6 209 78.5
RcHm_v2.0_Chr5g0084001 Rosa chinensis HOM05D006633 ORTHO05D008259 1.5e-92 343.6 227 75.8
BraA03t14735Z Brassica rapa HOM05D006633 ORTHO05D008259 2.0e-92 343.2 288 64.2
Solyc01g028870.3 Solanum lycopersicum HOM05D006633 ORTHO05D008259 2.6e-92 342.8 278 63.7
FAN16G0253 Fragaria x ananassa HOM05D006633 ORTHO05D008259 4.4e-92 342.0 208 80.3
CsaV3_4G017570 Cucumis sativus L. HOM05D006633 ORTHO05D008259 7.5e-92 341.3 204 79.4
FAN11G3357 Fragaria x ananassa HOM05D006633 ORTHO05D008259 7.5e-92 341.3 208 80.8
CARHR233930 Cardamine hirsuta HOM05D006633 ORTHO05D008259 3.7e-91 339.0 216 76.4
AL7G26590 Arabidopsis lyrata HOM05D006633 ORTHO05D008259 4.9e-91 338.6 290 63.1
AT4G26370 Arabidopsis thaliana HOM05D006633 ORTHO05D008259 4.9e-91 338.6 291 63.2
Aa31LG5G11730 Aethionema arabicum HOM05D006633 ORTHO05D008259 6.3e-91 338.2 218 76.1
PSO384G1804 Papaver somniferum HOM05D006633 ORTHO05D008259 6.3e-91 338.2 211 78.2
Sed0023197 Sechium edule HOM05D006633 ORTHO05D008259 6.3e-91 338.2 232 71.6
Carub.0007s1458 Capsella rubella HOM05D006633 ORTHO05D008259 1.1e-90 337.4 291 62.9
C07p54850 Brassica napus HOM05D006633 ORTHO05D008259 1.8e-90 336.7 287 62.4
BcaNung02426 Brassica carinata HOM05D006633 ORTHO05D008259 4.1e-90 335.5 286 63.6
PSO339G0565 Papaver somniferum HOM05D006633 ORTHO05D008259 4.1e-90 335.5 212 77.4
Nitab4.5_0000075g0280 Nicotiana tabacum HOM05D006633 ORTHO05D008259 5.4e-90 335.1 273 65.2
Sp7g24290 Schrenkiella parvula HOM05D006633 ORTHO05D008259 5.4e-90 335.1 290 62.8
A03p56650 Brassica napus HOM05D006633 ORTHO05D008259 9.2e-90 334.3 286 63.3
Thhalv10025833m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 1.6e-89 333.6 294 62.2
Nitab4.5_0008322g0010 Nicotiana tabacum HOM05D006633 ORTHO05D008259 1.6e-89 333.6 273 64.8
Lsat_1_v5_gn_2_51040 Lactuca sativa HOM05D006633 ORTHO05D008259 3.5e-89 332.4 303 61.4
BraA01t01713Z Brassica rapa HOM05D006633 ORTHO05D008259 4.5e-89 332.0 291 62.2
C01p22200 Brassica napus HOM05D006633 ORTHO05D008259 7.8e-89 331.3 287 63.1
BolC1t02150H Brassica oleracea HOM05D006633 ORTHO05D008259 7.8e-89 331.3 287 63.1
Migut.D02577 Erythranthe guttata HOM05D006633 ORTHO05D008259 1.3e-88 330.5 216 72.2
A01p17600 Brassica napus HOM05D006633 ORTHO05D008259 2.3e-88 329.7 290 61.4
Rhsim13G0234200 Rhododendron simsii HOM05D006633 ORTHO05D008259 2.3e-88 329.7 204 77.9
BcaC06g32755 Brassica carinata HOM05D006633 ORTHO05D008259 2.5e-87 326.2 285 61.1
arahy.Tifrunner.gnm1.ann1.B7F07X Arachis hypogaea HOM05D006633 ORTHO05D008259 9.5e-87 324.3 211 76.3
Lalb_Chr09g0328921 Lupinus albus HOM05D006633 ORTHO05D008259 4.7e-86 322.0 200 77.5
Phvul.002G101000 Phaseolus vulgaris HOM05D006633 ORTHO05D008259 4.7e-86 322.0 258 64.3
Glyma.07G224400 Glycine max HOM05D006633 ORTHO05D008259 5.2e-85 318.5 213 73.2
Glyma.20G024400 Glycine max HOM05D006633 ORTHO05D008259 5.2e-85 318.5 206 74.8
SalBow2G0284 Salvia bowleyana HOM05D006633 ORTHO05D008259 6.8e-85 318.2 243 63.8
Ca_18789_v3 Cicer arietinum L. HOM05D006633 ORTHO05D008259 1.5e-84 317.0 277 61.4
MSTRG.18887 Avicennia marina HOM05D006633 ORTHO05D008259 3.4e-84 315.8 203 74.4
Aqoxy2G00572 Aquilegia oxysepala HOM05D006633 ORTHO05D008259 9.8e-84 314.3 232 65.9
BcaC09g50693 Brassica carinata HOM05D006633 ORTHO05D008259 6.4e-83 311.6 293 59.7
DCAR_001964 Daucus carota HOM05D006633 ORTHO05D008259 6.4e-83 311.6 228 68.4
Haze_22925 Corylus avellana HOM05D006633 ORTHO05D008259 2.0e-81 306.6 215 72.1
Peaxi162Scf00186g01010 Petunia axillaris HOM05D006633 ORTHO05D008259 3.5e-81 305.8 283 59.0
Lj4g0000825 Lotus japonicus HOM05D006633 ORTHO05D008259 1.3e-80 303.9 225 68.0
ATR0697G106 Amborella trichopoda HOM05D006633 ORTHO05D008259 3.0e-80 302.8 227 64.3
Hund16643 Selenicereus undatus HOM05D006633 ORTHO05D008259 3.0e-80 302.8 209 71.8
Ah.01g020780 Amaranthus hybridus HOM05D006633 ORTHO05D008259 2.8e-78 296.2 199 73.4
AUR62011548 Chenopodium quinoa HOM05D006633 ORTHO05D008259 4.7e-78 295.4 199 74.9
Psat7g133240 Pisum sativum HOM05D006633 ORTHO05D008259 6.2e-78 295.0 227 65.6
Sc22g0000060 Simmondsia chinensis HOM05D006633 ORTHO05D008259 5.2e-77 292.0 183 76.0
BcaC06g32753 Brassica carinata HOM05D006633 ORTHO05D008259 8.9e-77 291.2 218 69.7
HPP92_027714 Vanilla planifolia HOM05D006633 ORTHO05D008259 2.4e-74 283.1 203 65.5
Os03g0656900 Oryza sativa ssp. japonica HOM05D006633 ORTHO05D008259 9.2e-74 281.2 205 64.9
Sc11g0009420 Simmondsia chinensis HOM05D006633 ORTHO05D008259 4.6e-73 278.9 215 66.5
VMungo0251G3366 Vigna mungo HOM05D006633 ORTHO05D008259 7.3e-71 271.6 178 74.2
arahy.Tifrunner.gnm1.ann1.UCUG5X Arachis hypogaea HOM05D006633 ORTHO05D008259 2.8e-70 269.6 258 57.8
TPR.G34055 Trifolium pratense HOM05D006633 ORTHO05D008259 5.2e-69 265.4 178 72.5
Medtr4g083370 Medicago truncatula HOM05D006633 ORTHO05D008259 2.4e-66 256.5 186 69.9
unitig_22.g5858 Utricularia gibba HOM05D006633 ORTHO05D008259 1.3e-64 250.8 229 56.8
FvH4_3g45910 Fragaria vesca HOM05D006633 ORTHO05D008259 6.2e-62 241.9 159 74.8
Hma1.2p1_2123F.1_g314533 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 6.4e-59 231.9 152 77.0
FAN25G3644 Fragaria x ananassa HOM05D006633 ORTHO05D008259 1.6e-57 227.3 221 56.6
Thhalv10026040m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 2.1e-54 216.9 139 74.8
Zm00001eb052690 Zea mays HOM05D006633 ORTHO05D008259 9.9e-52 208.0 265 47.2
vmacro04274 Vaccinium macrocarpon HOM05D006633 ORTHO05D008259 1.2e-41 174.5 149 59.1
SMO228G0116 Selaginella moellendorffii HOM05D006633 ORTHO05D008259 7.9e-41 171.8 197 45.7
CSS0002459 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 1.0e-40 171.4 102 82.4
CSS0031986 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 6.2e-38 162.2 95 78.9
ClCG02G024430 Citrullus lanatus HOM05D006633 ORTHO05D008259 7.6e-36 155.2 95 80.0
Pp3c10_23950 Physcomitrium patens HOM05D006633 ORTHO05D008259 1.9e-34 150.6 196 39.8
Hund09324 Selenicereus undatus HOM05D006633 ORTHO05D008259 1.2e-33 147.9 82 84.1
Zm00001eb218200 Zea mays HOM05D006633 ORTHO05D008259 2.1e-33 147.1 110 61.8
EL10Ac9g21929 Beta vulgaris HOM05D006633 ORTHO05D008259 1.8e-32 144.1 91 75.8
AUR62016367 Chenopodium quinoa HOM05D006633 ORTHO05D008259 8.2e-30 135.2 91 71.4
Mapoly0006s0155 Marchantia polymorpha HOM05D006633 ORTHO05D008259 1.2e-28 131.3 211 35.5
HanXRQChr15g0489901 Helianthus annuus HOM05D006633 ORTHO05D008259 3.0e-24 116.7 77 72.7
Hma1.2p1_1877F.1_g306330 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 7.4e-23 112.1 148 46.6
COL.COLO4_37952 Corchorus olitorius HOM05D006633 ORTHO05D008259 3.7e-22 109.8 58 93.1
CDE10G1061 Ceratophyllum demersum HOM05D006633 ORTHO05D008259 1.1e-18 98.2 69 65.2
HanXRQChr11g0336181 Helianthus annuus HOM05D006633 ORTHO05D008259 2.5e-18 97.1 70 68.6
SEGI_24744 Sequoiadendron giganteum HOM05D006633 ORTHO05D008259 5.5e-18 95.9 60 73.3
HanXRQChr02g0032931 Helianthus annuus HOM05D006633 ORTHO05D008259 3.3e-15 86.7 59 67.8
CDE10G0014 Ceratophyllum demersum HOM05D006633 ORTHO05D008259 1.7e-14 84.3 49 77.6
SEGI_20653 Sequoiadendron giganteum HOM05D006633 ORTHO05D008259 1.0e-08 65.1 57 54.4


User provided reference genes

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