Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 2.6e-58 228.4 109 100.0
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 2.9e-57 224.9 109 98.2
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.2e-55 219.5 109 96.3
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 4.4e-45 184.5 113 83.2
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 1.8e-43 179.1 112 77.7
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 1.6e-42 176.0 113 79.6
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 4.5e-42 174.5 111 80.2
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 1.7e-41 172.6 111 79.3
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.9e-40 169.1 111 78.4
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 3.2e-40 168.3 109 75.2
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 3.2e-40 168.3 111 78.4
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 5.5e-40 167.5 109 75.2
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 2.1e-39 165.6 109 74.3
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 1.9e-32 142.5 113 64.6
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 3.2e-32 141.7 110 65.5
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 3.2e-32 141.7 111 65.8
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 7.2e-32 140.6 117 63.2
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 1.6e-31 139.4 116 65.5
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 2.7e-31 138.7 83 79.5
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 1.5e-29 132.9 113 62.8
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 2.6e-29 132.1 111 62.2
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 3.4e-29 131.7 112 62.5
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 3.4e-29 131.7 106 61.3
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 4.4e-29 131.3 110 61.8
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 9.8e-29 130.2 110 61.8
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 9.8e-29 130.2 104 67.3
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 9.8e-29 130.2 111 60.4
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 1.7e-28 129.4 104 62.5
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 3.7e-28 128.3 111 64.9
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 4.8e-28 127.9 107 61.7
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 6.3e-28 127.5 113 58.4
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 6.3e-28 127.5 101 65.3
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 1.1e-27 126.7 111 61.3
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 1.1e-27 126.7 92 70.7
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 1.8e-27 125.9 112 64.3
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 1.8e-27 125.9 113 60.2
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 1.8e-27 125.9 109 60.6
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 1.8e-27 125.9 110 60.0
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 2.4e-27 125.6 112 59.8
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 5.4e-27 124.4 111 58.6
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 9.1e-27 123.6 107 59.8
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 9.1e-27 123.6 61 86.9
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 1.2e-26 123.2 109 61.5
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 1.2e-26 123.2 106 60.4
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 2.0e-26 122.5 108 55.6
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 2.0e-26 122.5 102 60.8
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 2.7e-26 122.1 111 61.3
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 4.5e-26 121.3 59 88.1
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 4.5e-26 121.3 110 58.2
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 7.7e-26 120.6 111 58.6
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 1.0e-25 120.2 104 60.6
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 1.0e-25 120.2 103 58.3
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 1.0e-25 120.2 107 56.1
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 1.3e-25 119.8 110 55.5
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 1.3e-25 119.8 104 60.6
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 1.3e-25 119.8 104 60.6
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 1.7e-25 119.4 101 60.4
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 2.3e-25 119.0 103 59.2
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 3.8e-25 118.2 103 58.3
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 5.0e-25 117.9 110 59.1
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 5.0e-25 117.9 60 83.3
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 6.5e-25 117.5 63 79.4
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 1.5e-24 116.3 107 58.9
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 1.9e-24 115.9 104 60.6
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 2.5e-24 115.5 112 55.4
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 2.5e-24 115.5 55 90.9
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 2.5e-24 115.5 112 53.6
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 2.5e-24 115.5 64 78.1
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 4.2e-24 114.8 106 60.4
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 9.5e-24 113.6 51 92.2
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 9.5e-24 113.6 64 76.6
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 1.2e-23 113.2 53 86.8
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 1.6e-23 112.8 108 52.8
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 1.6e-23 112.8 52 90.4
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 2.1e-23 112.5 108 57.4
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 2.1e-23 112.5 97 55.7
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 2.1e-23 112.5 97 55.7
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 2.1e-23 112.5 97 55.7
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 2.1e-23 112.5 71 71.8
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 2.1e-23 112.5 95 55.8
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 3.6e-23 111.7 106 56.6
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 3.6e-23 111.7 56 80.4
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 4.7e-23 111.3 107 54.2
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 4.7e-23 111.3 50 92.0
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 4.7e-23 111.3 50 92.0
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 4.7e-23 111.3 50 92.0
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 4.7e-23 111.3 50 92.0
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 4.7e-23 111.3 50 92.0
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 4.7e-23 111.3 95 55.8
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 4.7e-23 111.3 50 92.0
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 6.1e-23 110.9 51 86.3
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 6.1e-23 110.9 74 68.9
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 1.4e-22 109.8 49 91.8
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 1.4e-22 109.8 67 67.2
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 1.4e-22 109.8 93 57.0
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 1.8e-22 109.4 96 55.2
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 1.8e-22 109.4 87 60.9
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 2.3e-22 109.0 108 51.9
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 5.2e-22 107.8 107 53.3
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 5.2e-22 107.8 103 52.4
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 2.6e-21 105.5 86 59.3
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 5.7e-21 104.4 51 82.4
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 1.3e-20 103.2 100 51.0
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 1.7e-20 102.8 64 62.5
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 2.2e-20 102.4 61 65.6
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 2.8e-20 102.1 46 84.8
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 3.7e-20 101.7 113 48.7
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 1.4e-19 99.8 57 66.7
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 1.8e-19 99.4 111 54.1
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 9.2e-19 97.1 50 80.0
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 9.2e-19 97.1 67 68.7
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 5.9e-18 94.4 107 47.7
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 3.8e-17 91.7 46 78.3
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 2.5e-16 89.0 71 54.9
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 6.1e-15 84.3 49 63.3
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 6.8e-14 80.9 51 62.7


User provided reference genes

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