Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.8e-188 662.5 368 100.0
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.6e-187 659.4 368 99.2
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.8e-151 539.7 331 82.2
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 9.0e-151 537.3 330 82.4
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 1.2e-150 537.0 332 82.2
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 1.2e-150 537.0 331 81.0
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.5e-150 536.6 331 81.0
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 5.8e-150 534.6 331 82.8
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 3.2e-148 528.9 332 80.4
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 9.3e-148 527.3 328 80.8
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 6.0e-147 524.6 328 80.5
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.3e-146 523.5 330 80.6
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.1e-145 520.4 328 79.9
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.5e-145 520.0 328 79.9
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 4.3e-145 518.5 328 79.6
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.8e-144 515.8 328 79.3
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 3.6e-144 515.4 332 79.2
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 2.4e-143 512.7 331 77.0
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 3.1e-143 512.3 331 77.9
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.0e-142 509.6 331 78.2
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 2.0e-142 509.6 331 76.7
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 4.5e-142 508.4 332 77.1
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 9.9e-142 507.3 328 76.8
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 2.9e-141 505.8 328 79.0
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.9e-141 505.8 331 78.2
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.8e-141 505.4 328 78.4
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 8.4e-141 504.2 331 77.0
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 1.4e-140 503.4 331 75.5
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 2.4e-140 502.7 328 77.4
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 4.2e-140 501.9 332 76.2
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.6e-139 500.0 332 78.3
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 2.1e-139 499.6 331 76.4
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 2.1e-139 499.6 331 76.7
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 3.5e-139 498.8 331 76.1
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 4.6e-139 498.4 331 75.8
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 4.6e-139 498.4 331 76.7
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 6.0e-139 498.0 331 76.4
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 2.3e-138 496.1 331 76.1
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 3.0e-138 495.7 331 75.8
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 3.0e-138 495.7 331 74.9
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 3.0e-138 495.7 331 74.9
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 3.0e-138 495.7 331 77.0
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 3.0e-138 495.7 331 74.0
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 3.9e-138 495.4 351 73.2
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 5.1e-138 495.0 331 75.2
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 5.1e-138 495.0 331 75.8
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 6.7e-138 494.6 331 74.0
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 1.1e-137 493.8 331 75.2
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.9e-137 493.0 365 69.6
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.9e-137 493.0 330 76.4
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 5.6e-137 491.5 327 75.8
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.6e-136 490.0 331 73.4
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 2.1e-136 489.6 332 74.1
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 6.2e-136 488.0 330 74.2
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 1.1e-135 487.3 331 71.6
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 2.4e-135 486.1 330 73.9
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 3.1e-135 485.7 350 71.4
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.0e-135 485.3 318 77.7
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.5e-134 483.4 331 73.7
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 2.0e-134 483.0 335 72.5
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 4.5e-134 481.9 331 72.5
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 4.5e-134 481.9 384 66.7
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 5.8e-134 481.5 331 72.2
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 2.2e-133 479.6 331 71.3
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 2.9e-133 479.2 330 73.3
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.9e-133 478.4 328 75.3
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.9e-133 478.4 328 74.1
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 4.9e-133 478.4 368 66.3
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 3.2e-132 475.7 331 71.3
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.6e-128 463.4 399 64.4
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 2.1e-128 463.0 361 67.3
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.1e-127 460.7 283 80.6
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 2.4e-127 459.5 330 73.0
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 5.8e-126 454.9 270 95.6
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 1.0e-125 454.1 333 73.9
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 2.7e-123 446.0 329 67.2
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 3.5e-123 445.7 329 70.2
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 3.9e-122 442.2 328 68.6
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.1e-122 441.8 348 65.8
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.4e-119 433.7 333 70.6
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.4e-119 433.0 265 80.4
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 5.9e-118 428.3 316 70.6
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 7.6e-118 427.9 302 70.2
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 2.2e-117 426.4 272 81.2
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 1.9e-116 423.3 329 67.8
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 4.6e-115 418.7 233 91.4
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 1.9e-113 413.3 311 68.5
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.5e-108 396.4 323 64.7
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.2e-108 396.0 328 64.3
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 1.2e-107 394.0 232 85.8
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 2.3e-106 389.8 270 75.6
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 2.3e-106 389.8 302 64.2
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 3.3e-105 386.0 327 62.1
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 6.3e-104 381.7 333 59.5
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 2.2e-101 373.2 327 58.4
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 2.5e-100 369.8 232 79.3
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 2.5e-100 369.8 232 78.9
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.0e-98 362.8 273 68.1
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 3.3e-97 359.4 232 77.2
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 2.2e-96 356.7 232 77.2
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 2.2e-93 346.7 233 74.7
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.1e-92 344.4 207 85.0
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 3.2e-92 342.8 354 51.7
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 9.1e-87 324.7 310 56.5
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 8.8e-82 308.1 183 86.3
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 9.1e-79 298.1 337 49.3
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 9.2e-71 271.6 342 46.5
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.3e-66 256.9 181 69.6
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 1.7e-56 224.2 433 36.0
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.3e-52 209.5 220 54.1
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 6.8e-50 202.2 377 36.1
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.9e-48 196.8 114 86.8
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.4e-47 194.5 212 51.4
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.9e-40 169.5 110 77.3
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.9e-36 157.5 313 32.9
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.2e-35 154.8 152 54.6
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.2e-31 140.2 147 53.1
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.7e-30 137.1 117 60.7
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.5e-28 131.3 139 52.5
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.1e-27 127.5 97 62.9
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.4e-26 124.0 75 81.3
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 2.2e-24 117.5 75 77.3
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 2.4e-23 114.0 310 30.0
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 2.4e-23 114.0 73 76.7
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 3.2e-23 113.6 80 73.8
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.2e-22 111.7 91 67.0
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 5.3e-18 96.3 62 79.0
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 4.5e-09 66.6 124 34.7
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.5e-07 60.8 141 28.4
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 4.2e-07 60.1 180 26.1
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 4.2e-07 60.1 137 31.4
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 4.2e-07 60.1 138 33.3
SalBow8G2877 Salvia bowleyana HOM05D005388 ORTHO05D006281 4.2e-07 60.1 171 28.7
Haze_06907 Corylus avellana HOM05D005388 ORTHO05D006281 5.5e-07 59.7 147 28.6
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 5.5e-07 59.7 150 28.0
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 7.1e-07 59.3 135 34.8
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 7.1e-07 59.3 141 27.7
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 9.3e-07 58.9 123 30.9
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 9.3e-07 58.9 143 30.1
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 1.2e-06 58.5 127 30.7
Cpa.g.sc89.56 Carica papaya HOM05D005388 ORTHO05D006281 1.6e-06 58.2 154 27.9
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 1.6e-06 58.2 123 30.9
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 1.6e-06 58.2 142 28.2
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 1.6e-06 58.2 105 32.4
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.1e-06 57.8 141 27.7
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.1e-06 57.8 141 27.7
SGA_v2.0_scaffold104G30167 Striga asiatica HOM05D003894 ORTHO05D004584 2.1e-06 57.8 141 30.5
TPR.G18144 Trifolium pratense HOM05D003894 ORTHO05D004584 2.1e-06 57.8 143 30.8
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 2.1e-06 57.8 138 30.4
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 2.7e-06 57.4 178 28.7
Atru.chr1.2476 Acer truncatum HOM05D005388 ORTHO05D006281 3.5e-06 57.0 143 30.1
Ca_24586_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 3.5e-06 57.0 142 29.6
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 3.5e-06 57.0 89 36.0
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 3.5e-06 57.0 141 31.2
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 3.5e-06 57.0 171 26.3
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 3.5e-06 57.0 101 35.6
Sabra16G0117800 Salix brachista HOM05D005388 ORTHO05D006281 3.5e-06 57.0 141 28.4
Prupe.4G012000 Prunus persica HOM05D005388 ORTHO05D006281 4.6e-06 56.6 149 27.5
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 4.6e-06 56.6 88 36.4
SGA_v2.0_scaffold49G18245 Striga asiatica HOM05D005388 ORTHO05D006281 4.6e-06 56.6 143 28.0
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 4.6e-06 56.6 142 29.6
DCAR_027849 Daucus carota HOM05D005388 ORTHO05D006281 6.1e-06 56.2 142 28.2
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 6.1e-06 56.2 133 30.1
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.1e-06 56.2 141 27.0
Medtr5g012850 Medicago truncatula HOM05D003894 ORTHO05D004584 6.1e-06 56.2 141 29.1
Nitab4.5_0000618g0110 Nicotiana tabacum HOM05D003894 ORTHO05D004584 6.1e-06 56.2 139 30.9
AagrBONN_evm.TU.Sc2ySwM_117.1331 Anthoceros agrestis HOM05D003894 ORTHO05D004584 7.9e-06 55.8 115 33.9
CiPaw.09G101500 Carya illinoinensis HOM05D005388 ORTHO05D006281 7.9e-06 55.8 141 27.0
ECA234G3218 Erigeron canadensis HOM05D005388 ORTHO05D006281 7.9e-06 55.8 141 27.7


User provided reference genes

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