Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D06G179901 Gossypium hirsutum HOM05D006381 ORTHO05D008523 9.6e-33 142.9 72 100.0
Gorai.010G206700 Gossypium raimondii HOM05D006381 ORTHO05D008523 1.3e-24 115.9 59 98.3
Gohir.1Z049596 Gossypium hirsutum HOM05D006381 ORTHO05D008523 3.7e-24 114.4 59 98.3
Gohir.D06G180250 Gossypium hirsutum HOM05D006381 ORTHO05D008523 3.7e-24 114.4 59 98.3
Gorai.010G206300 Gossypium raimondii HOM05D006381 ORTHO05D017052 3.7e-24 114.4 59 96.6
Gohir.D06G178799 Gossypium hirsutum HOM05D006381 ORTHO05D008523 2.0e-22 108.6 57 94.7
Gohir.A01G191900 Gossypium hirsutum HOM05D006381 ORTHO05D008523 7.1e-20 100.1 59 88.1
Gohir.D06G176000 Gossypium hirsutum HOM05D006381 ORTHO05D008523 1.6e-19 99.0 59 88.1
Duzib128G0127 Durio zibethinus HOM05D006381 ORTHO05D008523 2.7e-19 98.2 57 87.7
Gorai.002G225000 Gossypium raimondii HOM05D006381 ORTHO05D008523 2.7e-19 98.2 59 86.4
Cpa.g.sc85.90 Carica papaya HOM05D006381 ORTHO05D008523 7.9e-19 96.7 57 86.0
Sc13g0002120 Simmondsia chinensis HOM05D006381 ORTHO05D008523 1.0e-18 96.3 59 83.1
Gohir.D01G178100 Gossypium hirsutum HOM05D006381 ORTHO05D008523 1.8e-18 95.5 59 84.7
QL07p023132 Quercus lobata HOM05D006381 ORTHO05D008523 1.8e-18 95.5 55 81.8
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 2.3e-18 95.1 55 80.0
CsaV3_4G031300 Cucumis sativus L. HOM05D006381 ORTHO05D008523 2.3e-18 95.1 55 83.6
ClCG04G000940 Citrullus lanatus HOM05D006381 ORTHO05D008523 3.9e-18 94.4 55 83.6
TWI74G0881 Tripterygium wilfordii HOM05D006381 ORTHO05D008523 3.9e-18 94.4 54 85.2
Thecc.05G168200 Theobroma cacao HOM05D006381 ORTHO05D008523 5.1e-18 94.0 54 87.0
Atru.BG.211.p Acer truncatum HOM05D006381 ORTHO05D008523 6.7e-18 93.6 55 80.0
CiPaw.09G032200 Carya illinoinensis HOM05D006381 ORTHO05D008523 6.7e-18 93.6 56 80.4
Haze_19961 Corylus avellana HOM05D006381 ORTHO05D008523 6.7e-18 93.6 55 78.2
SGA_v2.0_scaffold105G30477 Striga asiatica HOM05D006381 ORTHO05D005344 6.7e-18 93.6 55 81.8
FvH4_6g22700 Fragaria vesca HOM05D006381 ORTHO05D008523 8.7e-18 93.2 55 80.0
FAN02G4230 Fragaria x ananassa HOM05D006381 ORTHO05D008523 8.7e-18 93.2 55 80.0
FAN05G1475 Fragaria x ananassa HOM05D006381 ORTHO05D008523 8.7e-18 93.2 55 80.0
FAN09G4702 Fragaria x ananassa HOM05D006381 ORTHO05D008523 8.7e-18 93.2 55 80.0
FAN14G0786 Fragaria x ananassa HOM05D006381 ORTHO05D008523 8.7e-18 93.2 55 80.0
FAN14G1353 Fragaria x ananassa HOM05D006381 ORTHO05D008523 8.7e-18 93.2 55 80.0
Actinidia09382 Actinidia chinensis HOM05D006381 ORTHO05D008523 1.5e-17 92.4 55 81.8
MSTRG.6465 Avicennia marina HOM05D006381 ORTHO05D008523 1.9e-17 92.0 60 75.0
Ciclev10012632m.g Citrus clementina HOM05D006381 ORTHO05D008523 1.9e-17 92.0 57 78.9
PGR142G4202 Punica granatum HOM05D006381 ORTHO05D008523 2.5e-17 91.7 55 80.0
RcHm_v2.0_Chr3g0480311 Rosa chinensis HOM05D006381 ORTHO05D008523 2.5e-17 91.7 55 76.4
Sabra06G0042600 Salix brachista HOM05D006381 ORTHO05D008523 2.5e-17 91.7 55 80.0
GSVIVG01033526001 Vitis vinifera HOM05D006381 ORTHO05D008523 2.5e-17 91.7 55 81.8
CANSAT64G2218 Cannabis sativa HOM05D006381 ORTHO05D008523 3.3e-17 91.3 55 80.0
MBI04_g27128_MAGBIO Magnolia biondii HOM05D006381 ORTHO05D008523 3.3e-17 91.3 57 77.2
Potri.006G059200 Populus trichocarpa HOM05D006381 ORTHO05D008523 3.3e-17 91.3 55 78.2
Sed0015308 Sechium edule HOM05D006381 ORTHO05D008523 3.3e-17 91.3 58 77.6
Oeu033185.1 Olea europaea HOM05D006381 ORTHO05D008523 4.3e-17 90.9 58 75.9
CiPaw.10G028100 Carya illinoinensis HOM05D006381 ORTHO05D008523 5.7e-17 90.5 54 77.8
COL.COLO4_36132 Corchorus olitorius HOM05D006381 ORTHO05D008523 5.7e-17 90.5 55 80.0
Phvul.001G140700 Phaseolus vulgaris HOM05D006381 ORTHO05D008523 5.7e-17 90.5 55 76.4
THA.LOC104802431 Tarenaya hassleriana HOM05D006381 ORTHO05D008523 5.7e-17 90.5 55 81.8
TAR633G2259 Trochodendron aralioides HOM05D006381 ORTHO05D008523 5.7e-17 90.5 57 77.2
Aa31LG1G24050 Aethionema arabicum HOM05D006381 ORTHO05D008523 7.4e-17 90.1 55 78.2
Aqoxy2G00059 Aquilegia oxysepala HOM05D006381 ORTHO05D008523 9.7e-17 89.7 57 75.4
CSS0049124 Camellia sinensis var. sinensis HOM05D006381 ORTHO05D008523 9.7e-17 89.7 57 77.2
Manes.08G046500 Manihot esculenta HOM05D006381 ORTHO05D008523 9.7e-17 89.7 57 77.2
PSO541G3448 Papaver somniferum HOM05D006381 ORTHO05D008523 9.7e-17 89.7 54 79.6
PSO675G4699 Papaver somniferum HOM05D006381 ORTHO05D008523 9.7e-17 89.7 54 79.6
Prupe.7G073600 Prunus persica HOM05D006381 ORTHO05D008523 9.7e-17 89.7 54 79.6
unitig_21.g20909 Utricularia gibba HOM05D006381 ORTHO05D008523 1.3e-16 89.4 62 71.0
Eucgr.K01824 Eucalyptus grandis HOM05D006381 ORTHO05D008523 1.6e-16 89.0 54 79.6
Sopen03g011700 Solanum pennellii HOM05D006381 ORTHO05D008523 1.6e-16 89.0 55 78.2
PGSC0003DMG400011846 Solanum tuberosum HOM05D006381 ORTHO05D008523 1.6e-16 89.0 55 78.2
MD12G1061100 Malus domestica HOM05D006381 ORTHO05D008523 2.2e-16 88.6 52 84.6
Medtr7g092820 Medicago truncatula HOM05D006381 ORTHO05D008523 2.2e-16 88.6 54 79.6
Psat3g069760 Pisum sativum HOM05D006381 ORTHO05D008523 2.2e-16 88.6 55 78.2
CARHR137260 Cardamine hirsuta HOM05D006381 ORTHO05D008523 2.8e-16 88.2 51 82.4
Glyma.03G142800 Glycine max HOM05D006381 ORTHO05D008523 2.8e-16 88.2 54 77.8
Lju124A30T11 Lonicera japonica HOM05D006381 ORTHO05D008523 2.8e-16 88.2 54 79.6
Lj1g0008226 Lotus japonicus HOM05D006381 ORTHO05D008523 2.8e-16 88.2 54 77.8
Nn2g15584 Nelumbo nucifera HOM05D006381 ORTHO05D008523 2.8e-16 88.2 57 75.4
Solyc03g053110.3 Solanum lycopersicum HOM05D006381 ORTHO05D008523 2.8e-16 88.2 54 79.6
Glyma.19G145800 Glycine max HOM05D006381 ORTHO05D008523 3.7e-16 87.8 55 72.7
MD14G1060800 Malus domestica HOM05D006381 ORTHO05D008523 3.7e-16 87.8 57 75.4
arahy.Tifrunner.gnm1.ann1.427FHC Arachis hypogaea HOM05D006381 ORTHO05D008523 4.8e-16 87.4 54 77.8
arahy.Tifrunner.gnm1.ann1.7X1X2Z Arachis hypogaea HOM05D006381 ORTHO05D008523 4.8e-16 87.4 54 77.8
EL10Ac3g06950 Beta vulgaris HOM05D006381 ORTHO05D008523 4.8e-16 87.4 55 78.2
Cc00_g14590 Coffea canephora HOM05D006381 ORTHO05D008523 4.8e-16 87.4 55 74.5
Lalb_Chr18g0047731 Lupinus albus HOM05D006381 ORTHO05D008523 4.8e-16 87.4 54 75.9
Nn7g36055 Nelumbo nucifera HOM05D006381 ORTHO05D008523 6.3e-16 87.0 54 77.8
SalBow6G4397 Salvia bowleyana HOM05D006381 ORTHO05D008523 6.3e-16 87.0 55 74.5
Ah.04g152280 Amaranthus hybridus HOM05D006381 ORTHO05D008523 8.2e-16 86.7 52 80.8
Ca_08505_v3 Cicer arietinum L. HOM05D006381 ORTHO05D008523 8.2e-16 86.7 55 74.5
DCAR_019795 Daucus carota HOM05D006381 ORTHO05D008523 8.2e-16 86.7 54 75.9
Nitab4.5_0003572g0070 Nicotiana tabacum HOM05D006381 ORTHO05D008523 8.2e-16 86.7 54 79.6
CDE07G0110 Ceratophyllum demersum HOM05D006381 ORTHO05D008523 1.1e-15 86.3 55 76.4
AUR62012069 Chenopodium quinoa HOM05D006381 ORTHO05D008523 1.1e-15 86.3 55 72.7
AUR62024330 Chenopodium quinoa HOM05D006381 ORTHO05D008523 1.1e-15 86.3 55 72.7
Thhalv10017186m.g Eutrema salsugineum HOM05D006381 ORTHO05D008523 1.4e-15 85.9 55 74.5
Sp4g24400 Schrenkiella parvula HOM05D006381 ORTHO05D008523 1.4e-15 85.9 55 76.4
CAN.G316.6 Capsicum annuum HOM05D006381 ORTHO05D008523 1.8e-15 85.5 55 76.4
Rhsim03G0009200 Rhododendron simsii HOM05D006381 ORTHO05D008523 1.8e-15 85.5 58 72.4
Carub.0004s2456 Capsella rubella HOM05D006381 ORTHO05D008523 2.4e-15 85.1 55 74.5
BcaB06g29230 Brassica carinata HOM05D006381 ORTHO05D008523 3.1e-15 84.7 55 74.5
BraA04t18663Z Brassica rapa HOM05D006381 ORTHO05D008523 3.1e-15 84.7 55 74.5
VMungo1383G2147 Vigna mungo HOM05D006381 ORTHO05D008523 3.1e-15 84.7 55 69.1
AL4G40580 Arabidopsis lyrata HOM05D006381 ORTHO05D008523 4.1e-15 84.3 51 78.4
AT2G42220 Arabidopsis thaliana HOM05D006381 ORTHO05D008523 4.1e-15 84.3 51 78.4
BcaC02g07256 Brassica carinata HOM05D006381 ORTHO05D008523 4.1e-15 84.3 55 74.5
C04p69580 Brassica napus HOM05D006381 ORTHO05D008523 4.1e-15 84.3 55 74.5
BolC4t28456H Brassica oleracea HOM05D006381 ORTHO05D008523 4.1e-15 84.3 55 74.5
Os09g0279400 Oryza sativa ssp. japonica HOM05D006381 ORTHO05D008523 5.3e-15 84.0 55 74.5
A04p32060 Brassica napus HOM05D006381 ORTHO05D008523 6.9e-15 83.6 51 78.4
SEGI_13099 Sequoiadendron giganteum HOM05D006381 ORTHO05D008523 1.2e-14 82.8 55 70.9
ECA247G3115 Erigeron canadensis HOM05D006381 ORTHO05D008523 3.4e-14 81.3 54 72.2
HPP92_003001 Vanilla planifolia HOM05D006381 ORTHO05D008523 4.5e-14 80.9 57 71.9
Migut.J01817 Erythranthe guttata HOM05D006381 ORTHO05D008523 5.9e-14 80.5 54 72.2
Gorai.N006300 Gossypium raimondii HOM05D006381 ORTHO05D017052 5.9e-14 80.5 59 78.0
HanXRQChr10g0295701 Helianthus annuus HOM05D006381 ORTHO05D008523 5.9e-14 80.5 54 72.2
Gohir.A06G171602 Gossypium hirsutum HOM05D006381 ORTHO05D017052 1.0e-13 79.7 59 76.3
vmacro07936 Vaccinium macrocarpon HOM05D006381 ORTHO05D008523 3.8e-13 77.8 58 65.5
Gohir.D06G178733 Gossypium hirsutum HOM05D006381 ORTHO05D017052 5.0e-13 77.4 59 74.6
Gohir.D06G175916 Gossypium hirsutum HOM05D006381 ORTHO05D017052 1.6e-11 72.4 59 72.9
Zm00001eb308430 Zea mays HOM05D006381 ORTHO05D008523 8.8e-10 66.6 82 48.8
SMO140G0099 Selaginella moellendorffii HOM05D006381 ORTHO05D008523 4.3e-09 64.3 49 65.3
CBR_g12715 Chara braunii HOM05D006381 ORTHO05D008523 1.3e-08 62.8 51 60.8
ATR0800G100 Amborella trichopoda HOM05D006381 ORTHO05D008523 1.4e-07 59.3 36 80.6
Pp3c10_12080 Physcomitrium patens HOM05D006381 ORTHO05D008523 1.4e-07 59.3 59 50.8
AagrBONN_evm.TU.Sc2ySwM_344.4001 Anthoceros agrestis HOM05D006381 ORTHO05D008523 1.8e-07 58.9 51 56.9
Lj2A371T35 Lonicera japonica HOM05D006381 ORTHO05D008523 3.1e-07 58.2 39 66.7
Mapoly0036s0007 Marchantia polymorpha HOM05D006381 ORTHO05D008523 3.1e-07 58.2 54 53.7


User provided reference genes

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