Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.1e-35 151.8 73 100.0
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.7e-32 142.1 68 98.5
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.7e-32 142.1 68 98.5
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.8e-32 141.4 68 97.1
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.7e-32 141.0 68 98.5
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.7e-32 141.0 72 94.4
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.8e-32 140.6 68 97.1
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.8e-32 140.6 68 97.1
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.1e-31 139.4 68 95.6
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.4e-31 139.0 70 94.3
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.4e-31 139.0 70 94.3
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.4e-31 139.0 68 95.6
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 4.1e-31 137.5 68 95.6
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 4.1e-31 137.5 68 95.6
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 4.1e-31 137.5 68 95.6
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 4.1e-31 137.5 68 95.6
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.1e-31 137.5 68 95.6
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 5.3e-31 137.1 71 88.7
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 7.0e-31 136.7 68 92.6
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 7.0e-31 136.7 68 92.6
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 7.0e-31 136.7 68 92.6
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 9.1e-31 136.3 68 91.2
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 9.1e-31 136.3 68 91.2
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 9.1e-31 136.3 68 94.1
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 9.1e-31 136.3 68 91.2
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 1.2e-30 136.0 68 92.6
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.2e-30 136.0 68 91.2
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 1.2e-30 136.0 68 94.1
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 1.6e-30 135.6 68 91.2
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.6e-30 135.6 68 91.2
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 1.6e-30 135.6 68 91.2
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 1.6e-30 135.6 68 91.2
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.6e-30 135.6 68 91.2
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 2.0e-30 135.2 68 94.1
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 2.0e-30 135.2 68 89.7
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 2.0e-30 135.2 68 91.2
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 2.0e-30 135.2 68 89.7
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 2.0e-30 135.2 68 89.7
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.0e-30 135.2 68 91.2
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 2.7e-30 134.8 68 89.7
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 2.7e-30 134.8 68 89.7
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.7e-30 134.8 68 88.2
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.7e-30 134.8 68 91.2
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.7e-30 134.8 68 91.2
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 2.7e-30 134.8 68 92.6
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 2.7e-30 134.8 68 92.6
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 2.7e-30 134.8 68 92.6
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.5e-30 134.4 68 91.2
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.5e-30 134.4 68 91.2
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 4.5e-30 134.0 68 92.6
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 5.9e-30 133.7 68 88.2
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 5.9e-30 133.7 68 91.2
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 7.7e-30 133.3 68 89.7
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 7.7e-30 133.3 68 88.2
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 7.7e-30 133.3 68 88.2
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 7.7e-30 133.3 72 86.1
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.0e-29 132.9 68 91.2
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 1.0e-29 132.9 68 91.2
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 1.0e-29 132.9 68 88.2
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.0e-29 132.9 68 88.2
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.0e-29 132.9 68 88.2
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.0e-29 132.9 68 89.7
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.3e-29 132.5 68 89.7
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 1.3e-29 132.5 68 88.2
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.7e-29 132.1 68 86.8
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 1.7e-29 132.1 68 86.8
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.7e-29 132.1 68 88.2
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.7e-29 132.1 72 83.3
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.2e-29 131.7 68 86.8
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 2.2e-29 131.7 68 89.7
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.9e-29 131.3 68 85.3
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.9e-29 131.3 69 84.1
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 3.8e-29 131.0 68 85.3
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 3.8e-29 131.0 68 85.3
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 5.0e-29 130.6 68 85.3
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 5.0e-29 130.6 68 85.3
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 5.0e-29 130.6 68 85.3
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 6.5e-29 130.2 68 85.3
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 8.5e-29 129.8 63 96.8
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 8.5e-29 129.8 63 96.8
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.1e-28 129.4 68 89.7
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.1e-28 129.4 68 83.8
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.5e-28 129.0 68 85.3
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.5e-28 129.0 68 85.3
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.5e-28 129.0 70 82.9
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.9e-28 128.6 63 95.2
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.9e-28 128.6 63 95.2
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.9e-28 128.6 68 83.8
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 2.5e-28 128.3 65 89.2
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 2.5e-28 128.3 65 89.2
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.5e-28 128.3 68 83.8
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 2.5e-28 128.3 68 83.8
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 3.2e-28 127.9 63 93.7
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 3.2e-28 127.9 63 93.7
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 3.2e-28 127.9 63 93.7
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 3.2e-28 127.9 68 86.8
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 4.2e-28 127.5 68 86.8
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 5.5e-28 127.1 68 82.4
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 7.2e-28 126.7 63 92.1
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 7.2e-28 126.7 63 92.1
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 7.2e-28 126.7 68 82.4
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 7.2e-28 126.7 68 82.4
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 9.4e-28 126.3 68 80.9
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.2e-27 125.9 63 90.5
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.2e-27 125.9 68 83.8
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.6e-27 125.6 68 83.8
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.6e-27 125.6 67 89.6
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.6e-27 125.6 68 83.8
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.7e-27 124.8 68 89.7
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 3.6e-27 124.4 68 82.4
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 3.6e-27 124.4 68 83.8
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 4.7e-27 124.0 83 74.7
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 4.7e-27 124.0 63 88.9
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 4.7e-27 124.0 71 80.3
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 4.7e-27 124.0 68 82.4
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 6.1e-27 123.6 63 88.9
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 8.0e-27 123.2 63 85.7
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 8.0e-27 123.2 63 90.5
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 8.0e-27 123.2 68 80.9
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.8e-26 122.1 63 85.7
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 8.8e-26 119.8 68 80.9
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.2e-25 119.4 80 75.0
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 2.0e-25 118.6 69 82.6
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 9.8e-25 116.3 63 79.4
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.4e-23 112.5 68 73.5
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.8e-23 112.1 68 73.5
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.4e-23 111.7 85 67.1
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.3e-21 105.9 72 77.8
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 1.9e-20 102.1 62 71.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 2.5e-20 101.7 72 65.3
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 8.0e-19 96.7 68 60.3
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.0e-18 94.7 50 84.0
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 9.8e-17 89.7 68 66.2
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 6.3e-16 87.0 49 81.6
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 2.7e-14 81.6 62 56.5
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 5.2e-10 67.4 32 84.4
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 5.2e-10 67.4 34 91.2
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 1.4e-07 59.3 34 82.4
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.6e-06 55.8 30 70.0
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 4.6e-06 54.3 36 69.4


User provided reference genes

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