Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.0e-68 262.3 130 100.0
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 9.7e-68 260.0 130 98.5
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 9.7e-68 260.0 130 98.5
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 8.3e-67 256.9 130 98.5
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 5.3e-66 254.2 130 94.6
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 1.6e-65 252.7 130 94.6
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 1.3e-64 249.6 130 92.3
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.2e-64 248.8 130 93.1
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 8.5e-64 246.9 131 93.1
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.5e-63 246.1 130 90.8
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 5.5e-63 244.2 130 94.6
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 8.8e-61 236.9 129 92.2
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.7e-59 232.6 130 90.8
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 4.8e-59 231.1 130 84.6
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 7.0e-58 227.3 131 85.5
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 7.0e-58 227.3 130 85.4
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 9.1e-58 226.9 131 85.5
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 9.1e-58 226.9 130 86.2
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 1.6e-57 226.1 132 83.3
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 1.6e-57 226.1 133 83.5
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 3.5e-57 224.9 130 83.1
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 4.5e-57 224.6 130 83.1
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.0e-56 223.4 130 84.6
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.0e-56 223.4 131 84.0
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.0e-56 223.4 131 84.0
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.0e-56 223.4 131 84.0
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.3e-56 223.0 131 84.7
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 1.3e-56 223.0 134 82.1
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.3e-56 223.0 130 83.8
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 2.3e-56 222.2 130 80.8
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.3e-56 222.2 130 83.8
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.9e-56 221.9 130 80.8
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 3.8e-56 221.5 130 82.3
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 3.8e-56 221.5 122 91.0
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 6.6e-56 220.7 133 82.7
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.5e-55 219.5 132 81.1
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 1.5e-55 219.5 130 82.3
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 4.2e-55 218.0 129 81.4
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 5.5e-55 217.6 134 79.9
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 5.5e-55 217.6 130 79.2
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 7.2e-55 217.2 130 79.2
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 1.2e-54 216.5 130 80.0
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 1.2e-54 216.5 130 83.1
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.6e-54 216.1 130 81.5
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 2.1e-54 215.7 133 81.2
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 2.1e-54 215.7 129 79.1
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 2.1e-54 215.7 134 81.3
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 2.1e-54 215.7 132 80.3
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 2.1e-54 215.7 130 80.8
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.8e-54 215.3 130 81.5
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 4.7e-54 214.5 131 79.4
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 6.1e-54 214.2 130 80.0
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 8.0e-54 213.8 130 80.8
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 1.0e-53 213.4 131 81.7
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.0e-53 213.4 131 81.7
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 1.4e-53 213.0 131 77.1
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.4e-53 213.0 131 81.7
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 1.4e-53 213.0 130 76.9
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 1.4e-53 213.0 130 76.9
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 1.8e-53 212.6 130 79.2
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 1.8e-53 212.6 131 77.1
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 2.3e-53 212.2 130 78.5
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.3e-53 212.2 132 78.0
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.3e-53 212.2 133 82.0
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 4.0e-53 211.5 130 80.0
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 4.0e-53 211.5 130 78.5
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 4.0e-53 211.5 130 77.7
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 5.2e-53 211.1 134 74.6
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 6.8e-53 210.7 130 76.2
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 1.2e-52 209.9 132 77.3
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 2.6e-52 208.8 133 75.2
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 2.6e-52 208.8 130 79.2
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 2.6e-52 208.8 132 77.3
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 4.4e-52 208.0 130 76.2
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 7.5e-52 207.2 130 79.2
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.3e-51 206.5 130 76.2
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.7e-51 206.1 130 76.9
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 2.2e-51 205.7 132 75.8
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 2.2e-51 205.7 145 73.1
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.8e-51 205.3 133 75.2
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 3.7e-51 204.9 133 74.4
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.7e-51 204.9 133 75.9
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 4.9e-51 204.5 130 76.9
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 6.3e-51 204.1 130 73.1
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 6.3e-51 204.1 131 74.0
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 6.3e-51 204.1 133 78.2
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 6.3e-51 204.1 130 76.9
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 6.3e-51 204.1 130 76.2
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 8.3e-51 203.8 130 73.8
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 8.3e-51 203.8 130 77.7
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 8.3e-51 203.8 131 77.1
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 8.3e-51 203.8 132 78.8
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.1e-50 203.4 134 73.9
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 72.9
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 73.7
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 73.7
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 73.7
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.1e-50 203.4 130 78.5
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 1.4e-50 203.0 130 75.4
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 1.4e-50 203.0 133 73.7
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 1.4e-50 203.0 133 72.9
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 1.4e-50 203.0 130 73.8
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 1.8e-50 202.6 130 73.1
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.8e-50 202.6 126 78.6
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 2.4e-50 202.2 133 72.9
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 3.1e-50 201.8 118 83.1
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 4.1e-50 201.4 130 73.8
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 4.1e-50 201.4 127 78.0
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 4.1e-50 201.4 130 74.6
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 5.4e-50 201.1 133 74.4
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 9.2e-50 200.3 130 73.1
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.2e-49 199.9 130 73.1
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 1.2e-49 199.9 130 72.3
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.6e-49 199.5 130 73.8
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 2.7e-49 198.7 134 72.4
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 2.7e-49 198.7 134 72.4
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 2.7e-49 198.7 134 72.4
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 2.7e-49 198.7 134 72.4
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.7e-49 198.7 132 72.0
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.7e-49 198.7 133 73.7
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 4.5e-49 198.0 130 70.8
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 5.9e-49 197.6 134 71.6
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 7.8e-49 197.2 134 71.6
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 1.7e-48 196.1 130 70.0
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 1.7e-48 196.1 130 71.5
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 2.3e-48 195.7 125 76.8
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 2.9e-48 195.3 120 75.0
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 8.6e-48 193.7 126 74.6
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 1.1e-47 193.4 126 74.6
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.1e-47 193.4 130 68.5
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.5e-47 192.2 119 79.8
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 3.3e-47 191.8 117 77.8
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 4.3e-47 191.4 130 68.5
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 9.5e-47 190.3 120 75.0
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 1.6e-46 189.5 128 71.1
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.6e-46 189.5 130 67.7
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 8.0e-46 187.2 138 71.0
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.0e-45 186.8 130 66.9
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 8.9e-45 183.7 127 70.9
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 3.4e-44 181.8 122 72.1
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 5.8e-44 181.0 122 71.3
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 2.4e-42 175.6 139 65.5
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 2.7e-41 172.2 131 62.6
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 1.7e-40 169.5 130 65.4
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 3.9e-40 168.3 130 63.1
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 2.3e-37 159.1 130 54.6
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 4.0e-37 158.3 91 81.3
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 5.2e-37 157.9 115 66.1
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 1.1e-34 150.2 129 59.7
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 2.5e-31 139.0 119 52.9
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 4.0e-29 131.7 77 80.5
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 5.8e-28 127.9 78 75.6
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.4e-26 123.2 85 75.3
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 4.6e-25 118.2 75 76.0
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 4.6e-25 118.2 79 72.2
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 8.6e-24 114.0 77 71.4
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 8.6e-24 114.0 74 73.0
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.6e-22 109.8 76 63.2
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 6.4e-19 97.8 56 82.1
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 5.4e-18 94.7 60 81.7
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 1.5e-12 76.6 50 70.0
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 2.6e-12 75.9 62 59.7
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 8.4e-11 70.9 96 38.5
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 2.5e-07 59.3 54 55.6


User provided reference genes

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