Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 0.0e+00 1701.8 945 100.0
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 0.0e+00 1649.0 946 97.6
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 0.0e+00 1627.1 946 95.7
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 0.0e+00 1390.2 951 81.9
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 0.0e+00 1309.7 950 79.5
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 0.0e+00 1300.8 1006 74.7
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 0.0e+00 1159.4 950 67.6
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 0.0e+00 1152.5 945 71.0
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 0.0e+00 1138.3 948 69.3
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 0.0e+00 1116.3 955 67.9
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 0.0e+00 1107.0 941 67.8
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 0.0e+00 1106.7 924 65.8
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 0.0e+00 1104.0 942 68.8
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 0.0e+00 1085.9 941 67.0
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 0.0e+00 1077.4 932 66.8
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 1.7e-310 1069.3 958 63.6
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 7.8e-308 1060.4 948 65.6
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 5.1e-307 1057.7 958 65.0
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 3.0e-299 1031.9 966 63.0
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 9.6e-298 1026.9 958 64.0
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 1.4e-296 1023.1 863 66.3
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 1.5e-295 1019.6 935 61.5
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 6.0e-292 1007.7 928 61.5
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 7.8e-292 1007.3 951 63.1
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 1.5e-290 1003.0 958 61.8
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 1.5e-290 1003.0 923 63.5
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.3e-290 1001.9 951 61.2
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 2.1e-289 999.2 985 59.9
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 6.9e-288 994.2 939 62.0
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 1.3e-283 979.9 1078 55.9
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 1.5e-282 976.5 963 60.3
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 3.5e-276 955.3 943 58.1
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 7.9e-276 954.1 931 60.5
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 7.9e-276 954.1 950 60.4
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.8e-275 953.0 942 59.9
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 1.1e-274 950.3 966 59.4
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 1.6e-273 946.4 930 59.8
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 2.8e-273 945.7 945 59.7
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 3.7e-273 945.3 965 58.4
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 1.1e-272 943.7 947 57.8
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 7.6e-271 937.6 933 60.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 2.2e-270 936.0 931 60.3
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 4.9e-270 934.9 924 60.8
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 6.5e-270 934.5 931 59.7
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 2.5e-269 932.6 936 59.7
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.2e-269 932.2 943 59.8
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 5.5e-269 931.4 957 58.5
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 5.5e-269 931.4 969 58.9
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 3.5e-268 928.7 944 58.4
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.5e-268 928.7 950 59.3
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.5e-268 928.7 944 57.8
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 7.9e-268 927.5 939 57.2
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 8.7e-267 924.1 953 59.6
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 8.7e-267 924.1 942 60.7
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 9.7e-266 920.6 935 58.7
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.7e-265 918.7 946 58.4
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 3.1e-264 915.6 942 60.0
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 9.0e-264 914.1 915 61.2
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 5.9e-263 911.4 940 60.1
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 1.3e-262 910.2 937 56.8
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 1.9e-261 906.4 952 57.7
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 2.5e-261 906.0 934 56.1
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 3.2e-261 905.6 940 59.3
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 7.2e-261 904.4 966 56.1
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 9.3e-261 904.0 983 58.4
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.1e-260 902.9 848 60.8
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 6.1e-260 901.4 960 58.1
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 7.9e-260 901.0 945 56.1
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.3e-259 899.4 974 57.5
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 5.1e-259 898.3 934 59.4
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 5.1e-259 898.3 976 56.8
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 8.8e-259 897.5 952 55.4
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 1.1e-258 897.1 979 55.1
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 1.7e-257 893.3 924 57.4
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 2.4e-256 889.4 938 56.1
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 4.1e-256 888.6 944 55.9
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 2.0e-255 886.3 959 56.5
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 8.5e-254 880.9 940 57.0
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 8.5e-254 880.9 967 56.7
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 6.1e-252 874.8 1021 55.4
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 3.3e-250 869.0 953 55.2
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 7.4e-250 867.8 954 56.6
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 1.7e-249 866.7 952 54.8
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 7.0e-248 861.3 947 55.5
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 2.6e-247 859.4 944 56.4
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 2.1e-244 849.7 937 53.7
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 6.1e-244 848.2 955 55.7
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 8.0e-244 847.8 952 54.8
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 7.7e-239 831.2 924 54.4
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 1.8e-235 820.1 934 51.9
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 1.5e-229 800.4 955 51.9
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 1.1e-224 784.3 875 53.5
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 5.0e-222 775.4 819 57.9
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 5.6e-205 718.8 941 48.1
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.7e-182 644.0 976 44.2
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 7.8e-175 618.6 940 44.4
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 5.1e-174 615.9 442 68.8
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 3.2e-168 596.7 964 42.0
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 1.6e-167 594.3 695 54.8
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 6.0e-159 565.8 642 62.8
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 5.3e-155 552.7 393 69.7
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 4.1e-147 526.6 577 58.1
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 5.0e-137 493.0 519 62.6
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.4e-126 458.4 613 47.0
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 3.3e-125 453.8 903 40.3
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.3e-104 384.0 486 54.1
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 1.9e-96 358.2 612 42.5
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 7.0e-91 339.7 262 65.3
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 3.1e-86 324.3 320 59.4
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 7.5e-85 319.7 327 59.6
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 7.8e-74 283.1 313 55.3
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 6.2e-71 273.5 261 55.6
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.4e-70 272.3 402 50.5
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.8e-70 271.9 321 60.7
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 1.2e-66 259.2 240 62.1
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.3e-64 251.1 267 49.4
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 1.1e-62 246.1 969 28.5
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 7.9e-58 229.9 192 61.5
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 2.5e-56 224.9 394 42.4
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 3.0e-49 201.4 1158 26.3
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.5e-32 146.0 329 42.9
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 1.5e-32 146.0 748 25.0
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 1.8e-30 139.0 690 24.5
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 2.4e-30 138.7 343 43.1
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 6.9e-30 137.1 98 68.4
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.5e-29 134.4 142 57.0
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.2e-28 132.1 108 68.5
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 8.5e-28 130.2 102 69.6
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.1e-26 125.6 132 53.0
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.7e-26 125.2 143 50.3
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 6.1e-26 124.0 113 59.3
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 3.0e-25 121.7 251 39.0
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 3.9e-25 121.3 110 60.0
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.0e-20 106.7 114 52.6
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 3.8e-20 104.8 92 58.7
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.9e-19 102.4 92 58.7
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 7.9e-18 97.1 83 66.3
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.5e-16 92.8 69 73.9
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 2.8e-15 88.6 70 65.7
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 8.2e-15 87.0 56 80.4
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.3e-14 84.3 52 82.7
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.0e-13 82.4 52 82.7
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 2.0e-13 82.4 205 31.2
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 3.5e-13 81.6 152 39.5
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.2e-12 79.0 94 52.1
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 3.2e-11 75.1 59 64.4
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 6.1e-10 70.9 54 68.5
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 2.6e-08 65.5 90 47.8
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.3e-08 65.1 69 53.6


User provided reference genes

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