Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D04G093032 Gossypium hirsutum HOM05D004957 ORTHO05D006741 4.2e-53 211.1 104 100.0
Gorai.010G076900 Gossypium raimondii HOM05D004957 ORTHO05D006741 5.8e-31 137.5 92 79.3
Gohir.D07G155000 Gossypium hirsutum HOM05D004957 ORTHO05D006741 2.7e-28 128.6 83 81.9
Gohir.D10G207400 Gossypium hirsutum HOM05D004957 ORTHO05D006741 9.6e-26 120.2 61 95.1
Gorai.011G233100 Gossypium raimondii HOM05D004957 ORTHO05D006741 9.6e-26 120.2 61 95.1
Gohir.A10G199300 Gossypium hirsutum HOM05D004957 ORTHO05D006741 6.2e-25 117.5 61 93.4
Gorai.007G213100 Gossypium raimondii HOM05D004957 ORTHO05D006741 1.1e-24 116.7 81 79.0
Gohir.D13G119550 Gossypium hirsutum HOM05D004957 ORTHO05D006741 9.0e-24 113.6 69 81.2
Gorai.008G094800 Gossypium raimondii HOM05D004957 ORTHO05D020799 9.0e-24 113.6 81 77.8
Gohir.A08G081062 Gossypium hirsutum HOM05D004957 ORTHO05D006741 2.0e-23 112.5 72 77.8
Gohir.D12G084701 Gossypium hirsutum HOM05D004957 ORTHO05D006741 7.6e-23 110.5 73 78.1
Gohir.D10G206600 Gossypium hirsutum HOM05D004957 ORTHO05D006741 2.2e-22 109.0 93 65.6
Duzib128G0241 Durio zibethinus HOM05D004957 ORTHO05D006741 6.5e-22 107.5 61 86.9
COL.COLO4_08828 Corchorus olitorius HOM05D004957 ORTHO05D006741 8.4e-22 107.1 61 85.2
Gorai.003G092200 Gossypium raimondii HOM05D004957 ORTHO05D047474 8.4e-22 107.1 89 64.0
Gohir.D08G110908 Gossypium hirsutum HOM05D004957 ORTHO05D006741 1.1e-21 106.7 72 80.6
Gohir.D10G131700 Gossypium hirsutum HOM05D004957 ORTHO05D006741 1.1e-21 106.7 72 77.8
Thecc.10G094900 Theobroma cacao HOM05D004957 ORTHO05D006741 1.2e-20 103.2 61 82.0
Gohir.D06G134001 Gossypium hirsutum HOM05D004957 ORTHO05D006741 1.0e-19 100.1 68 76.5
Eucgr.G02721 Eucalyptus grandis HOM05D004957 ORTHO05D006741 3.0e-19 98.6 61 80.3
CiPaw.13G035400 Carya illinoinensis HOM05D004957 ORTHO05D006741 1.9e-18 95.9 61 75.4
QL04p040536 Quercus lobata HOM05D004957 ORTHO05D006741 1.9e-18 95.9 61 73.8
Ca_16691_v3 Cicer arietinum L. HOM05D004957 ORTHO05D006741 2.5e-18 95.5 71 67.6
Nn6g35094 Nelumbo nucifera HOM05D004957 ORTHO05D006741 4.3e-18 94.7 61 73.8
Gorai.009G343200 Gossypium raimondii HOM05D004957 ORTHO05D020799 5.7e-18 94.4 68 73.5
TWI63G0166 Tripterygium wilfordii HOM05D004957 ORTHO05D006741 7.4e-18 94.0 61 77.0
Cfa011211 Carpinus fangiana HOM05D004957 ORTHO05D006741 9.7e-18 93.6 61 72.1
Cc02_g10340 Coffea canephora HOM05D004957 ORTHO05D006741 9.7e-18 93.6 61 70.5
Ciclev10031936m.g Citrus clementina HOM05D004957 ORTHO05D006741 1.3e-17 93.2 61 72.1
Sed0021935 Sechium edule HOM05D004957 ORTHO05D006741 1.3e-17 93.2 61 72.1
Atru.chr12.947 Acer truncatum HOM05D004957 ORTHO05D006741 1.6e-17 92.8 61 73.8
CSS0009082 Camellia sinensis var. sinensis HOM05D004957 ORTHO05D006741 2.2e-17 92.4 61 70.5
Potri.010G233100 Populus trichocarpa HOM05D004957 ORTHO05D006741 2.2e-17 92.4 61 73.8
Cpa.g.sc128.59 Carica papaya HOM05D004957 ORTHO05D006741 2.8e-17 92.0 59 76.3
GSVIVG01034681001 Vitis vinifera HOM05D004957 ORTHO05D006741 2.8e-17 92.0 61 75.4
CDE06G1534 Ceratophyllum demersum HOM05D004957 ORTHO05D006741 3.7e-17 91.7 56 76.8
TPR.G17296 Trifolium pratense HOM05D004957 ORTHO05D006741 4.8e-17 91.3 71 64.8
CSS0009425 Camellia sinensis var. sinensis HOM05D004957 ORTHO05D006741 6.3e-17 90.9 61 68.9
ClCG05G021540 Citrullus lanatus HOM05D004957 ORTHO05D006741 6.3e-17 90.9 61 68.9
Glyma.06G127000 Glycine max HOM05D004957 ORTHO05D006741 6.3e-17 90.9 61 70.5
Phvul.009G055100 Phaseolus vulgaris HOM05D004957 ORTHO05D006741 6.3e-17 90.9 61 72.1
TPR.G33637 Trifolium pratense HOM05D004957 ORTHO05D006741 6.3e-17 90.9 71 64.8
VMungo1309G2659 Vigna mungo HOM05D004957 ORTHO05D006741 6.3e-17 90.9 61 72.1
Lj3A933T41 Lonicera japonica HOM05D004957 ORTHO05D006741 8.2e-17 90.5 61 70.5
PSO063G1974 Papaver somniferum HOM05D004957 ORTHO05D006741 1.1e-16 90.1 61 67.2
PSO339G2013 Papaver somniferum HOM05D004957 ORTHO05D006741 1.1e-16 90.1 61 67.2
HPP92_011881 Vanilla planifolia HOM05D004957 ORTHO05D006741 1.1e-16 90.1 68 63.2
HPP92_027323 Vanilla planifolia HOM05D004957 ORTHO05D006741 1.1e-16 90.1 68 63.2
CsaV3_5G035710 Cucumis sativus L. HOM05D004957 ORTHO05D006741 1.4e-16 89.7 61 68.9
Glyma.04G237200 Glycine max HOM05D004957 ORTHO05D006741 1.4e-16 89.7 60 73.3
Os02g0780600 Oryza sativa ssp. japonica HOM05D004957 ORTHO05D006741 2.4e-16 89.0 61 67.2
PGR142G1077 Punica granatum HOM05D004957 ORTHO05D006741 2.4e-16 89.0 61 73.8
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 3.1e-16 88.6 61 67.2
arahy.Tifrunner.gnm1.ann1.4XHC1Q Arachis hypogaea HOM05D004957 ORTHO05D006741 3.1e-16 88.6 61 75.4
Manes.10G054300 Manihot esculenta HOM05D004957 ORTHO05D006741 3.1e-16 88.6 61 72.1
Rhsim03G0109900 Rhododendron simsii HOM05D004957 ORTHO05D006741 3.1e-16 88.6 61 68.9
Sabra10G0180800 Salix brachista HOM05D004957 ORTHO05D006741 3.1e-16 88.6 58 74.1
Zm00001eb217850 Zea mays HOM05D004957 ORTHO05D006741 3.1e-16 88.6 61 67.2
ATR0820G057 Amborella trichopoda HOM05D004957 ORTHO05D006741 4.1e-16 88.2 61 67.2
CARHR161970 Cardamine hirsuta HOM05D004957 ORTHO05D006741 5.3e-16 87.8 61 72.1
FvH4_7g18320 Fragaria vesca HOM05D004957 ORTHO05D006741 5.3e-16 87.8 61 68.9
FAN06G1723 Fragaria x ananassa HOM05D004957 ORTHO05D006741 5.3e-16 87.8 61 68.9
FAN06G3957 Fragaria x ananassa HOM05D004957 ORTHO05D006741 5.3e-16 87.8 61 68.9
FAN10G2400 Fragaria x ananassa HOM05D004957 ORTHO05D006741 5.3e-16 87.8 61 68.9
Medtr3g091140 Medicago truncatula HOM05D004957 ORTHO05D006741 6.9e-16 87.4 71 60.6
RcHm_v2.0_Chr1g0362021 Rosa chinensis HOM05D004957 ORTHO05D006741 6.9e-16 87.4 61 70.5
Psat5g077960 Pisum sativum HOM05D004957 ORTHO05D006741 9.0e-16 87.0 71 62.0
THA.LOC104806007 Tarenaya hassleriana HOM05D004957 ORTHO05D006741 9.0e-16 87.0 61 70.5
arahy.Tifrunner.gnm1.ann1.I9WDPE Arachis hypogaea HOM05D004957 ORTHO05D006741 1.2e-15 86.7 61 70.5
FAN10G2184 Fragaria x ananassa HOM05D004957 ORTHO05D006741 1.5e-15 86.3 61 67.2
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 2.0e-15 85.9 64 65.6
Dinv20853 Davidia involucrata HOM05D004957 ORTHO05D006741 2.0e-15 85.9 61 65.6
FAN03G2263 Fragaria x ananassa HOM05D004957 ORTHO05D006741 2.0e-15 85.9 55 74.5
AL5G32800 Arabidopsis lyrata HOM05D004957 ORTHO05D006741 2.6e-15 85.5 61 70.5
Thhalv10010496m.g Eutrema salsugineum HOM05D004957 ORTHO05D006741 3.4e-15 85.1 61 70.5
vmacro07214 Vaccinium macrocarpon HOM05D004957 ORTHO05D006741 3.4e-15 85.1 61 65.6
Lalb_Chr08g0240391 Lupinus albus HOM05D004957 ORTHO05D006741 4.5e-15 84.7 61 68.9
MBI17_g12066_MAGBIO Magnolia biondii HOM05D004957 ORTHO05D006741 4.5e-15 84.7 53 75.5
AT3G52210 Arabidopsis thaliana HOM05D004957 ORTHO05D006741 5.9e-15 84.3 61 68.9
TAR623G0871 Trochodendron aralioides HOM05D004957 ORTHO05D006741 7.7e-15 84.0 61 65.6
Ah.04g163600 Amaranthus hybridus HOM05D004957 ORTHO05D006741 1.3e-14 83.2 61 65.6
Sp5g10060 Schrenkiella parvula HOM05D004957 ORTHO05D006741 1.3e-14 83.2 61 67.2
Lsat_1_v5_gn_2_102920 Lactuca sativa HOM05D004957 ORTHO05D006741 1.7e-14 82.8 61 67.2
CANSAT56G4280 Cannabis sativa HOM05D004957 ORTHO05D006741 2.2e-14 82.4 59 69.5
Gohir.D06G053475 Gossypium hirsutum HOM05D004957 ORTHO05D020799 2.2e-14 82.4 69 68.1
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-14 82.4 70 67.1
HanXRQChr14g0456261 Helianthus annuus HOM05D004957 ORTHO05D006741 2.9e-14 82.0 61 67.2
Prupe.2G205200 Prunus persica HOM05D004957 ORTHO05D006741 2.9e-14 82.0 61 63.9
DCAR_006375 Daucus carota HOM05D004957 ORTHO05D006741 3.8e-14 81.6 61 65.6
Gohir.D11G198933 Gossypium hirsutum HOM05D004957 ORTHO05D020799 3.8e-14 81.6 62 71.0
MD01G1099500 Malus domestica HOM05D004957 ORTHO05D006741 3.8e-14 81.6 61 65.6
Actinidia18565 Actinidia chinensis HOM05D004957 ORTHO05D006741 5.0e-14 81.3 61 63.9
MD07G1166400 Malus domestica HOM05D004957 ORTHO05D006741 5.0e-14 81.3 61 62.3
Carub.0005s1857 Capsella rubella HOM05D004957 ORTHO05D006741 6.5e-14 80.9 61 67.2
Lj1g0019138 Lotus japonicus HOM05D004957 ORTHO05D006741 1.1e-13 80.1 61 62.3
ECA238G1340 Erigeron canadensis HOM05D004957 ORTHO05D006741 1.4e-13 79.7 71 56.3
Nitab4.5_0003408g0080 Nicotiana tabacum HOM05D004957 ORTHO05D006741 1.4e-13 79.7 63 58.7
Oeu026555.1 Olea europaea HOM05D004957 ORTHO05D006741 1.4e-13 79.7 63 58.7
Gohir.D10G137832 Gossypium hirsutum HOM05D004957 ORTHO05D047116 1.9e-13 79.3 58 72.4
Migut.F00921 Erythranthe guttata HOM05D004957 ORTHO05D006741 2.5e-13 79.0 61 60.7
Mapoly0132s0017 Marchantia polymorpha HOM05D004957 ORTHO05D006741 2.5e-13 79.0 62 59.7
Nitab4.5_0000593g0090 Nicotiana tabacum HOM05D004957 ORTHO05D006741 2.5e-13 79.0 61 59.0
Peaxi162Scf00398g00615 Petunia axillaris HOM05D004957 ORTHO05D006741 3.2e-13 78.6 61 59.0
Zm00001eb076770 Zea mays HOM05D004957 ORTHO05D006741 3.2e-13 78.6 61 63.9
Gohir.D03G068501 Gossypium hirsutum HOM05D004957 ORTHO05D047474 4.2e-13 78.2 89 53.9
Solyc11g007700.2 Solanum lycopersicum HOM05D004957 ORTHO05D006741 4.2e-13 78.2 61 59.0
Pp3c11_2020 Physcomitrium patens HOM05D004957 ORTHO05D006741 5.5e-13 77.8 62 62.9
C08p27450 Brassica napus HOM05D004957 ORTHO05D006741 7.2e-13 77.4 61 62.3
SGA_v2.0_scaffold13G06503 Striga asiatica HOM05D004957 ORTHO05D006741 7.2e-13 77.4 54 68.5
Gohir.D01G124450 Gossypium hirsutum HOM05D004957 ORTHO05D020799 9.4e-13 77.0 71 63.4
Hund06755 Selenicereus undatus HOM05D004957 ORTHO05D006741 9.4e-13 77.0 61 59.0
Sc09g0005630 Simmondsia chinensis HOM05D004957 ORTHO05D006741 9.4e-13 77.0 59 64.4
PGSC0003DMG400027352 Solanum tuberosum HOM05D004957 ORTHO05D006741 9.4e-13 77.0 61 57.4
SalBow4G0968 Salvia bowleyana HOM05D004957 ORTHO05D006741 1.2e-12 76.6 54 66.7
Sopen11g003560 Solanum pennellii HOM05D004957 ORTHO05D006741 1.2e-12 76.6 61 57.4
BcaC07g39591 Brassica carinata HOM05D004957 ORTHO05D006741 1.6e-12 76.3 61 60.7
A09p45270 Brassica napus HOM05D004957 ORTHO05D006741 1.6e-12 76.3 61 60.7
BolC8t50362H Brassica oleracea HOM05D004957 ORTHO05D006741 1.6e-12 76.3 61 60.7
BraA09t39990Z Brassica rapa HOM05D004957 ORTHO05D006741 1.6e-12 76.3 61 60.7
CAN.G135.55 Capsicum annuum HOM05D004957 ORTHO05D006741 2.7e-12 75.5 61 55.7
Pp3c7_24280 Physcomitrium patens HOM05D004957 ORTHO05D006741 2.7e-12 75.5 62 59.7
SMO144G0142 Selaginella moellendorffii HOM05D004957 ORTHO05D006741 2.7e-12 75.5 60 56.7
SEGI_35484 Sequoiadendron giganteum HOM05D004957 ORTHO05D006741 2.7e-12 75.5 60 61.7
unitig_736.g22532 Utricularia gibba HOM05D004957 ORTHO05D006741 3.6e-12 75.1 78 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2921 Anthoceros agrestis HOM05D004957 ORTHO05D006741 1.4e-11 73.2 62 56.5
Gorai.004G121800 Gossypium raimondii HOM05D004957 ORTHO05D020799 1.4e-11 73.2 51 74.5
Gohir.D08G190266 Gossypium hirsutum HOM05D004957 ORTHO05D020799 1.8e-11 72.8 69 63.8
Mapoly0006s0044 Marchantia polymorpha HOM05D004957 ORTHO05D006741 1.8e-11 72.8 61 55.7
MSTRG.27517 Avicennia marina HOM05D004957 ORTHO05D006741 3.9e-11 71.6 54 64.8
Gorai.010G198900 Gossypium raimondii HOM05D004957 ORTHO05D047116 3.9e-11 71.6 52 73.1
AUR62027438 Chenopodium quinoa HOM05D004957 ORTHO05D006741 5.1e-11 71.2 59 59.3
AUR62031261 Chenopodium quinoa HOM05D004957 ORTHO05D006741 5.1e-11 71.2 59 59.3
Gohir.D07G146901 Gossypium hirsutum HOM05D004957 ORTHO05D216374 4.8e-09 64.7 61 62.3
Gohir.D03G093766 Gossypium hirsutum HOM05D004957 ORTHO05D006741 8.2e-09 63.9 34 88.2
TPR.G33662 Trifolium pratense HOM05D004957 ORTHO05D006741 1.8e-08 62.8 49 65.3
Aqoxy116s006 Aquilegia oxysepala HOM05D004957 ORTHO05D006741 2.6e-07 58.9 55 52.7


User provided reference genes

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