Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.8e-36 153.7 76 100.0
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.7e-33 144.8 76 94.7
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.7e-33 144.8 76 94.7
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.8e-33 143.3 76 92.1
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.0e-32 142.9 76 93.4
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.0e-32 142.9 76 93.4
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.9e-32 141.0 76 90.8
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-31 139.4 76 89.5
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 6.2e-30 133.7 74 87.8
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.1e-29 132.9 74 83.8
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 2.3e-29 131.7 74 85.1
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 3.1e-29 131.3 74 83.8
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 4.0e-29 131.0 74 81.1
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.0e-29 131.0 74 83.8
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.0e-29 131.0 74 83.8
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 1.5e-28 129.0 74 81.1
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 1.5e-28 129.0 74 81.1
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.5e-28 129.0 74 81.1
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.0e-28 128.6 74 81.1
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 2.6e-28 128.3 74 79.7
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.4e-28 127.9 74 82.4
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 4.4e-28 127.5 74 79.7
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.5e-28 126.7 74 82.4
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 7.5e-28 126.7 73 80.8
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 9.8e-28 126.3 76 77.6
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 9.8e-28 126.3 73 78.1
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 9.8e-28 126.3 73 79.5
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.3e-27 125.9 73 79.5
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 1.7e-27 125.6 75 80.0
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 2.2e-27 125.2 75 77.3
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 2.2e-27 125.2 73 78.1
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 2.2e-27 125.2 73 80.8
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 2.9e-27 124.8 73 80.8
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 2.9e-27 124.8 73 80.8
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.7e-27 124.4 76 75.0
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 3.7e-27 124.4 74 78.4
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 3.7e-27 124.4 75 76.0
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 6.4e-27 123.6 74 78.4
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 6.4e-27 123.6 75 74.7
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 6.4e-27 123.6 75 76.0
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 8.3e-27 123.2 75 76.0
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.1e-26 122.9 75 76.0
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.9e-26 122.1 76 75.0
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.9e-26 122.1 75 77.3
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 2.4e-26 121.7 73 78.1
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-26 121.7 74 78.4
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 2.4e-26 121.7 75 73.3
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 2.4e-26 121.7 75 74.7
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 4.1e-26 120.9 74 74.3
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 4.1e-26 120.9 73 78.1
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 4.1e-26 120.9 76 75.0
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 4.1e-26 120.9 73 75.3
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.4e-26 120.6 80 77.5
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 5.4e-26 120.6 75 74.7
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 5.4e-26 120.6 74 77.0
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 5.4e-26 120.6 76 71.1
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 7.0e-26 120.2 73 75.3
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 7.0e-26 120.2 73 75.3
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 7.0e-26 120.2 73 75.3
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 7.0e-26 120.2 71 77.5
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 7.0e-26 120.2 73 76.7
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 7.0e-26 120.2 75 74.7
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 7.0e-26 120.2 73 75.3
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 7.0e-26 120.2 73 78.1
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 7.0e-26 120.2 73 78.1
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 7.0e-26 120.2 73 78.1
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 9.2e-26 119.8 73 76.7
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 9.2e-26 119.8 73 76.7
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 9.2e-26 119.8 73 76.7
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 9.2e-26 119.8 73 76.7
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.2e-26 119.8 74 77.0
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 9.2e-26 119.8 73 76.7
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 9.2e-26 119.8 75 72.0
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 9.2e-26 119.8 73 76.7
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 9.2e-26 119.8 71 78.9
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 9.2e-26 119.8 73 78.1
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 9.2e-26 119.8 75 72.0
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 1.2e-25 119.4 73 75.3
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.2e-25 119.4 73 79.5
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 1.2e-25 119.4 74 75.7
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 1.2e-25 119.4 73 79.5
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 1.6e-25 119.0 74 75.7
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 2.0e-25 118.6 75 73.3
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 2.0e-25 118.6 74 77.0
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 2.0e-25 118.6 76 73.7
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.0e-25 118.6 76 73.7
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.0e-25 118.6 76 73.7
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 2.0e-25 118.6 73 74.0
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.7e-25 118.2 76 72.4
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.7e-25 118.2 74 75.7
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 3.5e-25 117.9 75 73.3
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 3.5e-25 117.9 73 75.3
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.0e-25 117.1 76 72.4
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 6.0e-25 117.1 73 74.0
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 7.8e-25 116.7 68 79.4
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 7.8e-25 116.7 74 75.7
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 7.8e-25 116.7 67 77.6
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 7.8e-25 116.7 74 75.7
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 7.8e-25 116.7 74 75.7
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.0e-24 116.3 73 74.0
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.0e-24 116.3 73 74.0
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 1.0e-24 116.3 73 74.0
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.7e-24 115.5 76 73.7
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.3e-24 115.2 74 75.7
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 2.3e-24 115.2 73 72.6
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 2.3e-24 115.2 73 71.2
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 3.9e-24 114.4 67 76.1
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 3.9e-24 114.4 67 76.1
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 3.9e-24 114.4 67 76.1
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.9e-24 114.4 76 69.7
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.9e-24 114.4 76 69.7
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 5.0e-24 114.0 73 69.9
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 5.0e-24 114.0 74 71.6
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.0e-24 114.0 81 71.6
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 6.6e-24 113.6 67 77.6
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.9e-23 112.1 73 71.2
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.3e-23 110.2 81 69.1
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 9.5e-23 109.8 74 68.9
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 2.1e-22 108.6 73 72.6
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 8.1e-22 106.7 72 69.4
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 1.5e-20 102.4 73 64.4
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 2.2e-19 98.6 75 60.0
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 2.9e-19 98.2 73 65.8
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.9e-19 98.2 72 59.7
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 4.9e-19 97.4 73 64.4
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 4.9e-19 97.4 62 72.6
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.1e-18 96.3 61 72.1
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 3.2e-18 94.7 75 65.3
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 4.1e-18 94.4 72 63.9
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.0e-16 89.7 86 53.5
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.7e-16 89.0 75 56.0
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 2.3e-16 88.6 73 47.9
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.3e-16 88.6 73 67.1
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 3.9e-16 87.8 73 50.7
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 5.1e-16 87.4 72 56.9
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 5.8e-12 73.9 50 68.0


User provided reference genes

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