Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-79 298.5 147 100.0
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.0e-78 293.5 147 98.6
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.0e-78 293.5 147 98.6
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.5e-77 291.2 147 98.0
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-76 289.3 147 97.3
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.4e-76 287.3 147 97.3
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.1e-62 241.5 179 73.2
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.6e-61 238.8 179 72.1
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.9e-61 237.7 179 71.5
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.7e-53 210.7 124 85.5
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 7.7e-53 210.7 124 85.5
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.2e-50 203.4 124 83.9
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 4.5e-45 184.9 123 77.2
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 8.5e-44 180.6 179 60.9
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.9e-43 179.5 124 73.4
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 9.4e-43 177.2 120 75.0
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 9.7e-40 167.2 124 69.4
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.8e-39 164.9 81 97.5
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 2.4e-38 162.5 119 68.9
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 3.1e-38 162.2 116 69.8
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 4.1e-38 161.8 119 68.1
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 5.9e-37 157.9 116 68.1
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 5.9e-37 157.9 119 67.2
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 5.9e-37 157.9 119 67.2
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 5.9e-37 157.9 116 67.2
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 7.7e-37 157.5 119 66.4
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.7e-36 156.4 119 65.5
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.7e-36 156.4 120 68.3
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 2.2e-36 156.0 119 66.4
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 8.5e-36 154.1 119 64.7
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 8.5e-36 154.1 124 61.3
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 1.1e-35 153.7 121 65.3
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 1.5e-35 153.3 119 64.7
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 3.2e-35 152.1 116 66.4
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 3.2e-35 152.1 119 64.7
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 4.2e-35 151.8 120 65.0
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 4.2e-35 151.8 121 63.6
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.7e-34 149.1 90 75.6
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 3.6e-34 148.7 121 63.6
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 4.7e-34 148.3 101 68.3
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 8.0e-34 147.5 115 65.2
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 1.4e-33 146.7 114 65.8
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.8e-33 146.4 120 60.8
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.8e-33 146.4 71 97.2
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 2.3e-33 146.0 115 64.3
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 2.3e-33 146.0 83 81.9
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 2.3e-33 146.0 118 65.3
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 3.0e-33 145.6 115 65.2
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 4.0e-33 145.2 122 63.9
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.2e-32 143.7 120 60.0
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.2e-32 143.7 114 64.9
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.2e-32 143.7 71 98.6
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 1.5e-32 143.3 119 61.3
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.5e-32 143.3 119 59.7
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.5e-32 143.3 70 98.6
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 1.5e-32 143.3 119 60.5
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.3e-32 142.1 71 97.2
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 3.3e-32 142.1 120 59.2
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 4.4e-32 141.7 121 58.7
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 4.4e-32 141.7 114 62.3
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 4.4e-32 141.7 114 63.2
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 5.7e-32 141.4 153 54.2
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 5.7e-32 141.4 120 60.0
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 5.7e-32 141.4 119 64.7
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 9.7e-32 140.6 121 62.8
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 1.7e-31 139.8 120 58.3
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.7e-31 139.8 113 66.4
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 3.7e-31 138.7 119 58.0
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 4.8e-31 138.3 119 59.7
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 1.1e-30 137.1 95 71.6
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 1.8e-30 136.3 92 71.7
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 2.4e-30 136.0 121 61.2
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 2.4e-30 136.0 116 59.5
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 4.1e-30 135.2 119 55.5
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 5.3e-30 134.8 119 58.0
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 5.3e-30 134.8 96 66.7
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.2e-29 133.7 71 94.4
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 2.0e-29 132.9 119 57.1
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.7e-29 132.5 122 59.0
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.7e-29 132.5 71 91.5
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 2.7e-29 132.5 89 70.8
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 4.5e-29 131.7 115 60.9
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 5.9e-29 131.3 97 66.0
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.7e-28 129.8 79 79.7
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 2.2e-28 129.4 119 56.3
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 2.9e-28 129.0 121 57.0
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 3.8e-28 128.6 95 69.5
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.1e-27 127.1 120 53.3
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 1.1e-27 127.1 118 55.1
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.5e-27 126.7 104 63.5
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 1.9e-27 126.3 119 58.8
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.9e-27 126.3 119 61.3
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 3.2e-27 125.6 97 66.0
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 4.2e-27 125.2 119 55.5
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 4.2e-27 125.2 119 52.1
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.6e-26 123.2 114 56.1
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 1.6e-26 123.2 96 65.6
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.6e-26 122.1 155 47.1
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 6.1e-26 121.3 116 56.0
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 6.1e-26 121.3 119 53.8
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.3e-25 119.4 155 45.2
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 5.2e-25 118.2 124 50.8
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 6.8e-25 117.9 86 69.8
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 6.3e-23 111.3 119 51.3
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.2e-21 107.1 74 70.3
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 2.7e-21 105.9 124 46.8
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-18 97.1 54 81.5
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 1.6e-18 96.7 92 56.5
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.0e-17 94.0 127 44.1
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 3.0e-17 92.4 92 48.9
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 7.0e-14 81.3 93 50.5
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 2.7e-13 79.3 115 40.0
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 2.7e-13 79.3 82 51.2
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 4.3e-11 72.0 81 43.2
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 9.5e-11 70.9 83 51.8
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.2e-10 70.5 108 36.1
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.0e-09 67.4 94 42.6
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 1.8e-09 66.6 77 44.2
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.2e-09 65.1 31 96.8
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 1.5e-08 63.5 46 63.0
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.0e-08 63.2 31 93.5
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.0e-08 63.2 31 93.5
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.0e-08 63.2 31 93.5
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.0e-08 63.2 31 93.5
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 4.4e-08 62.0 30 93.3
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.4e-08 62.0 31 90.3
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 5.8e-08 61.6 32 84.4
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 1.7e-07 60.1 30 90.0
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.7e-07 60.1 30 90.0
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.7e-07 60.1 30 90.0
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.7e-07 60.1 30 90.0
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 1.7e-07 60.1 49 55.1
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.7e-07 58.9 30 86.7
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 6.4e-07 58.2 119 37.8
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 1.9e-06 56.6 31 80.6
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 1.9e-06 56.6 30 86.7
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 2.4e-06 56.2 30 83.3
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 2.4e-06 56.2 31 77.4
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 3.2e-06 55.8 31 80.6
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 3.2e-06 55.8 31 80.6
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 3.2e-06 55.8 31 80.6
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 3.2e-06 55.8 31 80.6
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 3.2e-06 55.8 31 80.6
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 3.2e-06 55.8 31 80.6
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 3.2e-06 55.8 31 80.6
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 3.2e-06 55.8 31 80.6
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 3.2e-06 55.8 31 80.6
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 3.2e-06 55.8 30 80.0
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.1e-06 55.5 30 83.3
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 4.1e-06 55.5 31 77.4
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 4.1e-06 55.5 30 83.3
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 4.1e-06 55.5 30 83.3
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 4.1e-06 55.5 30 83.3
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 4.1e-06 55.5 30 83.3
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 4.1e-06 55.5 31 77.4
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 4.1e-06 55.5 31 77.4
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 4.1e-06 55.5 31 77.4
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 4.1e-06 55.5 31 77.4
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 4.1e-06 55.5 66 40.9
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 4.1e-06 55.5 30 83.3
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 4.1e-06 55.5 31 77.4
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 5.4e-06 55.1 30 80.0
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 5.4e-06 55.1 30 80.0
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 7.0e-06 54.7 31 77.4
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 7.0e-06 54.7 31 77.4
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 7.0e-06 54.7 31 77.4
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 7.0e-06 54.7 31 77.4
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 7.0e-06 54.7 31 77.4
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 7.0e-06 54.7 31 74.2
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 7.0e-06 54.7 30 80.0
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 7.0e-06 54.7 31 74.2
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 7.0e-06 54.7 31 77.4
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 7.0e-06 54.7 31 77.4
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 7.0e-06 54.7 31 74.2
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 9.2e-06 54.3 30 80.0
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 9.2e-06 54.3 30 80.0
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 9.2e-06 54.3 29 82.8


User provided reference genes

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