Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.3e-67 258.8 136 100.0
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 2.5e-66 255.4 136 98.5
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.4e-64 248.8 136 95.6
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.4e-64 248.8 136 95.6
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 1.2e-44 183.3 136 73.5
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 2.3e-43 179.1 136 73.5
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 8.7e-35 150.6 132 61.4
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 9.3e-29 130.6 141 53.9
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 1.2e-28 130.2 133 57.1
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 6.0e-28 127.9 135 54.1
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.3e-27 126.7 130 56.2
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 1.3e-27 126.7 119 58.8
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 1.3e-27 126.7 113 63.7
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 3.9e-27 125.2 136 55.1
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 5.1e-27 124.8 118 57.6
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 5.1e-27 124.8 136 57.4
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 5.1e-27 124.8 133 54.1
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.9e-26 122.9 137 51.8
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 1.9e-26 122.9 140 54.3
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 2.5e-26 122.5 131 55.0
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 3.3e-26 122.1 127 55.1
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 3.3e-26 122.1 131 53.4
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 3.3e-26 122.1 133 56.4
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 4.3e-26 121.7 137 51.1
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 5.7e-26 121.3 148 54.1
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 5.7e-26 121.3 134 51.5
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 7.4e-26 120.9 135 51.9
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 2.8e-25 119.0 128 53.1
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 3.7e-25 118.6 125 54.4
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 4.8e-25 118.2 136 50.0
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 6.3e-25 117.9 130 54.6
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 8.2e-25 117.5 136 52.9
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 8.2e-25 117.5 130 53.1
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 8.2e-25 117.5 113 55.8
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 1.1e-24 117.1 121 54.5
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 1.1e-24 117.1 135 51.9
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 1.4e-24 116.7 126 54.0
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.4e-24 116.7 132 50.8
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 1.8e-24 116.3 143 50.3
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.4e-24 115.9 136 49.3
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 3.1e-24 115.5 138 52.2
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 4.1e-24 115.2 133 54.9
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 6.9e-24 114.4 136 47.8
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 1.2e-23 113.6 127 52.0
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.2e-23 113.6 136 50.0
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 2.0e-23 112.8 127 51.2
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 2.6e-23 112.5 139 52.5
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 2.6e-23 112.5 134 53.0
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 3.4e-23 112.1 133 48.9
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 5.9e-23 111.3 136 52.9
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 5.0e-22 108.2 132 50.0
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 5.0e-22 108.2 134 50.0
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 6.5e-22 107.8 130 49.2
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 6.5e-22 107.8 131 48.9
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 1.1e-21 107.1 135 47.4
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.4e-21 106.7 135 46.7
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 2.5e-21 105.9 135 46.7
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 4.2e-21 105.1 124 46.8
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 9.4e-21 104.0 133 48.1
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.2e-20 103.6 117 50.4
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 1.0e-19 100.5 133 47.4
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 1.0e-19 100.5 116 51.7
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 1.4e-19 100.1 132 48.5
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 1.4e-19 100.1 134 47.8
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 1.8e-19 99.8 128 47.7
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 6.7e-19 97.8 133 49.6
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 6.7e-19 97.8 125 48.0
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 8.8e-19 97.4 142 43.7
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 2.5e-18 95.9 131 45.8
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 4.3e-18 95.1 99 51.5
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 5.7e-18 94.7 101 52.5
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 5.7e-18 94.7 115 52.2
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 7.4e-18 94.4 133 45.1
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 7.4e-18 94.4 134 46.3
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 1.7e-17 93.2 132 47.7
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 2.8e-17 92.4 141 42.6
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 6.3e-17 91.3 161 39.1
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 8.2e-17 90.9 107 49.5
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.4e-16 90.1 135 44.4
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 4.1e-16 88.6 132 46.2
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 4.1e-16 88.6 125 44.0
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.0e-15 86.3 106 49.1
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 2.0e-15 86.3 116 48.3
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 2.6e-15 85.9 88 51.1
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 3.4e-15 85.5 133 41.4
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 5.9e-15 84.7 84 52.4
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 5.9e-15 84.7 84 52.4
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 5.9e-15 84.7 106 47.2
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 5.9e-15 84.7 107 52.3
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 7.7e-15 84.3 144 41.7
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 1.3e-14 83.6 141 44.0
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 1.7e-14 83.2 134 44.8
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.9e-14 82.4 129 45.0
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 3.8e-14 82.0 130 42.3
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 3.8e-14 82.0 128 43.0
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 5.0e-14 81.6 132 44.7
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 5.0e-14 81.6 132 44.7
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.4e-13 80.1 155 40.6
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 1.4e-13 80.1 78 55.1
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 1.9e-13 79.7 115 42.6
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 1.9e-13 79.7 115 42.6
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 1.9e-13 79.7 139 41.7
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 4.2e-13 78.6 139 41.7
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 4.2e-13 78.6 120 40.8
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 9.4e-13 77.4 120 40.0
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.6e-12 76.6 132 43.9
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 3.6e-12 75.5 125 36.8
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 6.1e-12 74.7 90 51.1
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 6.1e-12 74.7 79 53.2
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 7.9e-12 74.3 86 50.0
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 1.8e-11 73.2 124 41.9
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 1.8e-11 73.2 124 41.9
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 1.8e-11 73.2 120 38.3
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 3.9e-11 72.0 79 46.8
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 5.1e-11 71.6 120 39.2
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 5.1e-11 71.6 121 43.8
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 6.7e-11 71.2 113 38.9
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 8.8e-11 70.9 131 37.4
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 2.0e-10 69.7 135 34.8
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 2.6e-10 69.3 68 52.9
Potri.006G202400 Populus trichocarpa HOM05D000509 ORTHO05D006393 2.6e-10 69.3 88 50.0
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 5.7e-10 68.2 103 39.8
Aqoxy7G00306 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 5.7e-10 68.2 86 48.8
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 1.3e-09 67.0 71 53.5
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 6.3e-09 64.7 87 47.1
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 6.3e-09 64.7 87 47.1
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 8.2e-09 64.3 84 45.2
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 2.4e-08 62.8 68 48.5
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 4.1e-08 62.0 141 36.2
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 9.1e-08 60.8 97 40.2
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.2e-07 60.5 120 35.0
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 1.2e-07 60.5 100 41.0
Sc09g0004100 Simmondsia chinensis HOM05D000509 ORTHO05D006393 1.2e-07 60.5 101 39.6
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 1.5e-07 60.1 115 38.3
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 3.4e-07 58.9 87 44.8
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 4.5e-07 58.5 121 36.4
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 1.7e-06 56.6 48 60.4


User provided reference genes

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