Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.5e-283 978.0 471 100.0
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.7e-279 965.3 469 98.9
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.8e-274 948.0 469 97.2
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 2.2e-255 885.2 469 89.3
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 2.1e-253 878.6 469 89.6
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 3.1e-249 864.8 469 87.8
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.6e-240 835.9 471 85.8
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.9e-239 831.6 485 83.9
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 9.5e-238 826.6 465 85.8
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 1.5e-235 819.3 473 81.4
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.4e-233 812.8 481 79.4
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 2.4e-233 812.0 481 79.4
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 9.2e-233 810.1 472 81.4
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.1e-230 803.1 483 77.8
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 7.3e-230 800.4 466 79.8
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.0e-228 796.6 461 81.8
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 2.0e-227 792.3 465 81.5
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 2.6e-227 792.0 472 79.7
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 2.6e-227 792.0 468 78.6
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 3.4e-227 791.6 472 79.7
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 7.5e-227 790.4 473 79.3
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 7.5e-227 790.4 472 80.1
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.3e-226 789.6 472 79.9
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 1.7e-226 789.3 467 80.1
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 2.2e-226 788.9 464 80.0
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.9e-226 788.5 472 79.9
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 2.9e-226 788.5 464 80.2
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 4.9e-226 787.7 461 80.7
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 4.9e-226 787.7 472 79.0
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 1.4e-225 786.2 472 79.4
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 1.8e-225 785.8 469 77.2
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 2.4e-225 785.4 472 78.2
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 2.4e-225 785.4 472 79.2
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 3.2e-225 785.0 472 78.8
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 4.1e-225 784.6 472 78.8
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 7.0e-225 783.9 472 79.4
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 7.0e-225 783.9 465 79.4
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 9.2e-225 783.5 472 78.4
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 9.2e-225 783.5 480 77.5
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.2e-224 783.1 472 78.0
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.0e-223 780.0 480 77.5
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 1.0e-223 780.0 471 78.3
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 3.0e-223 778.5 472 76.9
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.6e-223 777.3 472 78.8
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 8.6e-223 776.9 468 77.6
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.5e-222 776.2 466 78.8
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 3.3e-222 775.0 466 79.2
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 9.5e-222 773.5 472 79.0
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 1.2e-221 773.1 508 73.8
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.2e-221 773.1 497 75.7
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 4.7e-221 771.2 472 78.2
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 8.0e-221 770.4 475 78.1
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 4.0e-220 768.1 461 76.8
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 4.0e-220 768.1 564 67.4
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 5.2e-220 767.7 467 77.1
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 8.9e-220 766.9 461 78.7
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 8.9e-220 766.9 472 76.7
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 2.0e-219 765.8 461 78.1
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 7.5e-219 763.8 481 75.5
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 7.5e-219 763.8 463 76.5
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.7e-218 762.7 461 77.9
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 2.9e-218 761.9 467 77.9
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 2.4e-217 758.8 464 77.6
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 9.2e-217 756.9 474 74.3
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 2.7e-216 755.4 475 75.2
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 1.7e-215 752.7 465 76.1
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 3.9e-215 751.5 567 66.8
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 6.6e-215 750.7 473 75.1
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 8.6e-215 750.4 474 76.2
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 7.3e-214 747.3 467 73.7
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 1.2e-213 746.5 466 75.5
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 4.7e-213 744.6 467 75.4
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 6.2e-213 744.2 471 75.2
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 1.2e-211 740.0 447 76.3
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 3.4e-211 738.4 471 73.7
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 1.3e-210 736.5 473 74.2
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 2.2e-210 735.7 460 74.8
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 2.9e-210 735.3 471 74.3
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 1.1e-209 733.4 476 73.1
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 1.1e-209 733.4 462 73.6
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 7.1e-209 730.7 474 73.4
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 7.1e-209 730.7 463 73.2
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 9.2e-209 730.3 470 72.6
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 9.2e-209 730.3 468 72.9
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 1.2e-208 729.9 470 73.0
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 2.1e-208 729.2 465 73.3
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 2.1e-208 729.2 465 72.9
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 2.1e-208 729.2 465 72.9
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 2.1e-208 729.2 465 73.3
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 2.7e-208 728.8 462 73.2
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 3.0e-207 725.3 463 72.6
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 3.0e-207 725.3 551 65.3
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 1.9e-206 722.6 462 72.9
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 1.2e-205 719.9 486 70.0
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 3.6e-205 718.4 439 78.1
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 7.6e-203 710.7 474 71.5
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 5.6e-198 694.5 396 82.3
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 9.6e-198 693.7 396 82.6
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 3.6e-197 691.8 562 62.5
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.2e-195 686.8 465 70.1
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.5e-195 686.4 528 64.6
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 2.9e-194 682.2 587 59.8
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 4.9e-194 681.4 486 67.9
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 3.2e-193 678.7 474 68.8
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 3.9e-191 671.8 455 72.5
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 1.4e-180 636.7 478 63.8
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 2.0e-179 632.9 436 69.3
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 9.9e-179 630.6 393 75.1
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 4.2e-177 625.2 473 61.5
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 1.2e-176 623.6 466 63.9
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.7e-176 622.5 359 81.9
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 8.4e-170 600.9 376 74.2
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 4.6e-168 595.1 376 73.7
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 1.5e-166 590.1 345 80.9
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 1.5e-166 590.1 345 79.1
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 1.8e-159 566.6 485 57.5
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.5e-154 548.1 312 83.3
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 3.2e-153 545.8 304 84.2
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 4.2e-153 545.4 312 83.0
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 5.2e-143 511.9 308 78.6
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 1.1e-142 510.8 335 73.1
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.5e-142 510.4 299 79.6
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 3.7e-141 505.8 313 77.0
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-137 493.0 303 76.2
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 8.0e-136 488.0 322 72.4
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 1.4e-127 460.7 302 73.8
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 8.0e-104 381.7 222 79.3
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 1.4e-103 380.9 452 45.1
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 6.0e-99 365.5 386 48.2
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 3.0e-90 336.7 434 44.2
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 5.1e-90 335.9 235 67.2
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.2e-88 331.3 196 79.6
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.0e-74 285.0 159 83.6
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.0e-74 285.0 159 83.6
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 7.3e-73 278.9 172 77.3
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.8e-72 276.2 159 82.4
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 1.0e-66 258.5 145 79.3
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.9e-52 211.1 422 33.2
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.3e-45 188.3 106 83.0
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.2e-44 182.6 94 91.5
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.1e-43 181.0 93 91.4
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 6.7e-42 176.0 146 58.2
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.3e-41 173.7 106 78.3
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 8.2e-40 169.1 119 68.9
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.4e-31 141.0 91 70.3
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 6.7e-26 122.9 77 74.0
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 4.5e-22 110.2 87 60.9
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.7e-21 108.2 76 69.7
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.2e-20 104.0 65 67.7
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.2e-11 75.5 43 79.1
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 2.1e-11 74.7 47 72.3
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 2.0e-09 68.2 34 82.4


User provided reference genes

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