Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 2331.2 1229 100.0
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 2265.7 1229 97.2
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 2239.5 1229 96.4
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1954.9 1230 82.8
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1889.0 1228 80.7
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1752.6 1145 80.6
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1495.3 1233 66.0
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1494.2 1225 66.9
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1477.6 1223 66.1
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1472.6 1218 65.6
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1469.1 1218 65.4
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1453.3 1197 65.1
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1451.8 1231 63.5
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1439.5 1186 65.4
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1422.1 1225 63.5
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1418.7 1235 65.6
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1403.3 1225 62.9
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1376.7 1302 60.3
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1373.2 1170 62.8
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1372.5 1228 63.0
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1369.4 1193 62.4
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1354.3 1224 63.6
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1348.2 1285 60.2
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1347.8 1240 60.4
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1345.5 1186 62.2
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1336.2 1195 61.1
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1317.4 1231 60.4
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1310.8 1246 58.3
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1304.3 1246 58.1
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1297.7 1176 60.7
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1294.6 1232 59.1
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1288.5 1186 59.6
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1287.3 1235 59.2
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1286.6 1235 59.2
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1286.6 1183 60.1
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1272.7 1225 60.7
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1268.4 1191 59.1
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1265.0 1257 57.8
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1256.5 1185 58.4
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1254.2 1303 55.6
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1253.4 1232 57.0
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1249.6 1182 58.3
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1245.7 1172 59.1
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1228.8 1223 57.6
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1209.1 1205 56.8
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1203.0 1099 61.3
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1200.3 1197 56.4
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1191.0 1255 53.8
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1186.0 1231 54.9
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 0.0e+00 1186.0 1234 55.9
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1185.2 1258 53.7
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1182.2 1268 53.9
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1171.8 1300 52.8
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1171.4 1254 54.2
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 0.0e+00 1162.1 1229 54.4
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 0.0e+00 1158.7 1211 54.3
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 0.0e+00 1154.0 1232 52.9
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1127.9 1200 53.6
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 0.0e+00 1112.1 1033 60.1
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 0.0e+00 1110.9 1185 53.7
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1096.6 1244 53.1
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 0.0e+00 1095.5 1237 53.1
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1093.2 1228 52.9
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 0.0e+00 1090.1 1175 53.1
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1080.5 1233 51.3
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1075.5 1242 50.6
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 8.6e-307 1057.4 1250 50.4
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 2.8e-305 1052.4 1234 50.4
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 8.0e-305 1050.8 1240 51.6
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 1.1e-304 1050.4 1196 50.8
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 4.1e-301 1038.5 1298 47.4
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 3.5e-300 1035.4 1247 48.6
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 6.0e-300 1034.6 1193 50.0
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 7.5e-295 1017.7 1180 50.5
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 7.5e-295 1017.7 1230 49.9
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 4.4e-287 991.9 1118 51.8
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 6.0e-284 981.5 1236 47.4
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 1.2e-281 973.8 768 68.6
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 5.3e-280 968.4 1078 52.6
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 5.3e-280 968.4 1035 53.9
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 8.7e-267 924.5 746 67.6
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 5.3e-256 888.6 1299 44.1
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 2.6e-255 886.3 1179 45.3
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 8.7e-251 871.3 815 62.5
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 1.3e-246 857.4 1233 43.1
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 3.8e-230 802.7 1070 45.0
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 2.3e-211 740.3 988 45.1
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.0e-211 740.0 1212 41.7
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 8.1e-180 635.6 618 54.7
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 6.4e-169 599.4 1232 35.4
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 1.6e-167 594.7 1176 34.6
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 1.6e-151 541.6 1151 36.6
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 9.6e-149 532.3 1245 33.3
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 2.0e-130 471.5 622 48.7
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 1.1e-115 422.5 392 54.8
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 2.5e-104 384.8 401 51.1
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 2.2e-92 345.1 445 49.9
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.0e-77 295.4 516 37.6
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 2.5e-72 278.5 1315 26.5
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.3e-65 256.1 393 38.2
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 4.9e-44 184.5 214 50.9
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 4.5e-37 161.4 273 37.7
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 2.7e-34 152.1 265 36.6
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 7.9e-34 150.6 180 58.3
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 6.9e-30 137.5 167 49.7
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 9.0e-30 137.1 86 68.6
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 5.8e-29 134.4 129 54.3
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 1.3e-28 133.3 110 67.3
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 5.1e-25 121.3 72 70.8
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 5.7e-24 117.9 76 67.1
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 2.8e-23 115.5 142 48.6
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.7e-23 115.2 96 55.2
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.3e-20 106.7 83 61.4
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 2.2e-07 62.8 74 41.9


User provided reference genes

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