Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A13G036650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.1e-84 315.1 156 100.0
Gorai.013G039500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.5e-70 269.6 154 88.3
Gohir.D13G034950 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.6e-70 266.9 154 86.4
Thecc.02G091100 Theobroma cacao HOM05D002599 ORTHO05D001895 3.2e-33 145.6 132 54.5
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.2e-17 91.3 123 40.7
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.1e-16 89.7 115 42.6
Manes.10G121100 Manihot esculenta HOM05D009888 ORTHO05D001895 4.7e-16 88.6 136 43.4
Potri.003G010700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-15 87.4 117 42.7
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-15 87.4 114 41.2
COL.COLO4_11750 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.4e-15 87.0 136 41.9
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-15 87.0 127 40.2
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-15 87.0 127 40.2
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.4e-15 87.0 127 40.2
Manes.10G125112 Manihot esculenta HOM05D009888 ORTHO05D001895 1.4e-15 87.0 136 42.6
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-15 85.5 118 39.8
Potri.003G013026 Populus trichocarpa HOM05D009888 ORTHO05D001895 8.8e-15 84.3 137 38.0
Sabra03G0006400 Salix brachista HOM05D002599 ORTHO05D001895 8.8e-15 84.3 120 42.5
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 8.8e-15 84.3 123 38.2
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-14 84.0 116 43.1
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-14 84.0 135 37.8
Potri.003G021250 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.5e-14 83.6 137 38.0
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-14 83.2 117 39.3
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 2.6e-14 82.8 128 41.4
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.3e-14 82.4 140 36.4
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.4e-14 81.3 118 41.5
Sabra01G0166800 Salix brachista HOM05D002599 ORTHO05D001895 7.4e-14 81.3 126 41.3
Sabra01G0167700 Salix brachista HOM05D008886 ORTHO05D001895 7.4e-14 81.3 129 35.7
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-13 80.5 120 40.0
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-13 80.5 118 38.1
Potri.003G011875 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.7e-13 80.1 136 37.5
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.8e-13 79.3 104 39.4
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-13 79.3 127 37.0
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-13 79.3 115 37.4
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-13 79.3 132 32.6
Gorai.005G241300 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.7e-13 79.0 123 40.7
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 3.7e-13 79.0 119 41.2
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 3.7e-13 79.0 119 41.2
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 3.7e-13 79.0 119 41.2
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 4.8e-13 78.6 119 41.2
Gorai.005G241200 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.3e-13 78.2 123 39.8
Potri.003G014750 Populus trichocarpa HOM05D009888 ORTHO05D001895 6.3e-13 78.2 136 36.8
Gohir.A03G192400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.2e-13 77.8 123 39.8
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.2e-13 77.8 104 39.4
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-12 77.4 115 40.0
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-12 77.0 123 41.5
Sabra03G0006100 Salix brachista HOM05D002599 ORTHO05D001895 1.8e-12 76.6 129 40.3
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.4e-12 76.3 122 36.1
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.4e-12 76.3 117 35.9
Potri.004G221600 Populus trichocarpa HOM05D008886 ORTHO05D001895 3.1e-12 75.9 108 38.0
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.3e-12 75.1 116 37.9
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.3e-12 75.1 116 37.9
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 5.3e-12 75.1 108 36.1
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.1e-12 74.3 119 34.5
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 9.1e-12 74.3 116 39.7
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 9.1e-12 74.3 116 36.2
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-11 73.9 117 39.3
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-11 73.9 109 37.6
Potri.015G126301 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-11 73.9 92 40.2
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-11 73.2 104 37.5
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 2.0e-11 73.2 105 37.1
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-11 73.2 120 36.7
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-11 73.2 120 36.7
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-11 73.2 122 38.5
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 2.6e-11 72.8 105 37.1
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.6e-11 72.8 118 37.3
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.6e-11 72.8 116 37.9
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.5e-11 72.4 129 35.7
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.5e-11 72.4 117 38.5
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 3.5e-11 72.4 116 39.7
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.5e-11 72.0 136 30.9
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 4.5e-11 72.0 87 47.1
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 4.5e-11 72.0 115 39.1
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.9e-11 71.6 112 37.5
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.9e-11 71.6 118 36.4
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.9e-11 71.6 112 37.5
Potri.004G221300 Populus trichocarpa HOM05D008886 ORTHO05D001895 5.9e-11 71.6 112 33.9
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 7.7e-11 71.2 129 33.3
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-10 70.9 116 37.1
Potri.011G005200 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.0e-10 70.9 95 35.8
Potri.015G016700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-10 70.9 115 36.5
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.7e-10 70.1 118 37.3
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-10 70.1 123 37.4
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.2e-10 69.7 89 42.7
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.2e-10 69.7 112 35.7
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.2e-10 69.7 121 34.7
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.2e-10 69.7 121 34.7
Potri.004G219700 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-10 69.7 121 39.7
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.2e-10 69.7 129 31.0
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.9e-10 69.3 88 42.0
Gohir.A03G192100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.9e-10 69.3 122 36.9
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 3.8e-10 68.9 118 34.7
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.8e-10 68.9 118 35.6
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.8e-10 68.9 107 36.4
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 5.0e-10 68.6 90 37.8
COL.COLO4_29532 Corchorus olitorius HOM05D002599 ORTHO05D025152 5.0e-10 68.6 107 39.3
Potri.007G119400 Populus trichocarpa HOM05D008886 ORTHO05D001895 5.0e-10 68.6 88 39.8
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.5e-10 68.2 132 31.1
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 6.5e-10 68.2 88 39.8
Sabra03G0009500 Salix brachista HOM05D002599 ORTHO05D001895 6.5e-10 68.2 119 39.5
Sabra09G0045600 Salix brachista HOM05D008886 ORTHO05D001895 6.5e-10 68.2 107 33.6
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 6.5e-10 68.2 109 38.5
Sabra03G0008900 Salix brachista HOM05D002599 ORTHO05D001895 8.5e-10 67.8 119 39.5
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 8.5e-10 67.8 118 37.3
Sabra03G0008700 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-09 67.4 119 37.0
Atru.chr6.323 Acer truncatum HOM05D002599 ORTHO05D001895 1.5e-09 67.0 112 35.7
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-09 66.6 121 36.4
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-09 66.6 119 37.0
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 1.9e-09 66.6 114 35.1
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.9e-09 66.6 130 32.3
Potri.004G220100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-09 66.2 107 37.4
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 3.2e-09 65.9 106 34.9
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.2e-09 65.9 132 31.1
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.2e-09 65.9 132 31.1
Sabra01G0167100 Salix brachista HOM05D008886 ORTHO05D001895 3.2e-09 65.9 108 32.4
Sabra03G0009200 Salix brachista HOM05D002599 ORTHO05D001895 3.2e-09 65.9 119 39.5
Sabra03G0009800 Salix brachista HOM05D002599 ORTHO05D001895 3.2e-09 65.9 119 39.5
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.5e-09 65.1 119 35.3
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.2e-09 64.7 118 36.4
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 7.2e-09 64.7 133 33.1
Manes.02G167801 Manihot esculenta HOM05D009888 ORTHO05D001895 9.4e-09 64.3 135 32.6
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.4e-09 64.3 117 35.0
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 9.4e-09 64.3 128 31.2
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-08 63.9 119 37.0
Sabra01G0167400 Salix brachista HOM05D008886 ORTHO05D001895 1.2e-08 63.9 83 41.0
Sabra07G0096600 Salix brachista HOM05D000527 ORTHO05D017379 1.2e-08 63.9 88 36.4
Potri.003G011250 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-08 63.5 118 37.3
Thecc.02G024900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.6e-08 63.5 120 35.0
COL.COLO4_17754 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.6e-08 62.4 102 39.2
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.6e-08 62.4 119 36.1
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 4.7e-08 62.0 132 34.1
Potri.003G018400 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.7e-08 62.0 129 34.9
Sabra07G0096500 Salix brachista HOM05D008886 ORTHO05D001895 6.1e-08 61.6 88 36.4
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.0e-08 61.2 127 31.5
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.0e-08 61.2 127 31.5
Sabra01G0167200 Salix brachista HOM05D008886 ORTHO05D001895 8.0e-08 61.2 95 34.7
Sabra07G0097000 Salix brachista HOM05D000527 ORTHO05D017379 8.0e-08 61.2 91 35.2
Atru.chr6.704 Acer truncatum HOM05D002599 ORTHO05D001895 1.0e-07 60.8 108 31.5
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.0e-07 60.8 118 37.3
Potri.004G011000 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.0e-07 60.8 110 33.6
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 1.8e-07 60.1 121 33.9
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-07 60.1 93 39.8
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-07 59.7 129 34.1
Sabra16G0269300 Salix brachista HOM05D008886 ORTHO05D001895 3.0e-07 59.3 81 37.0
Sabra15G0012600 Salix brachista HOM05D002599 ORTHO05D001895 4.0e-07 58.9 114 36.0
COL.COLO4_17588 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.2e-07 58.5 115 31.3
Gohir.D02G213300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.7e-07 58.2 107 36.4
COL.COLO4_11751 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.8e-07 57.8 109 34.9
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 8.8e-07 57.8 130 30.8
Sabra01G0165000 Salix brachista HOM05D002599 ORTHO05D001895 8.8e-07 57.8 123 33.3
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 8.8e-07 57.8 106 32.1
Gohir.D02G213400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-06 57.4 97 38.1
Potri.011G004900 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.2e-06 57.4 128 29.7
Manes.07G017350 Manihot esculenta HOM05D016843 ORTHO05D001895 3.3e-06 55.8 121 33.9
Sabra16G0267500 Salix brachista HOM05D008886 ORTHO05D001895 4.4e-06 55.5 81 35.8
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 4.4e-06 55.5 104 35.6
Thecc.04G013500 Theobroma cacao HOM05D002599 ORTHO05D001895 5.7e-06 55.1 108 37.0


User provided reference genes

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