Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.9e-48 194.5 100 100.0
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.3e-47 190.3 100 97.0
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 7.3e-47 190.3 100 97.0
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 7.3e-31 137.1 100 73.0
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.4e-29 132.1 97 69.1
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 2.0e-28 129.0 98 69.4
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 4.9e-27 124.4 102 68.6
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 3.2e-26 121.7 98 65.3
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 9.3e-26 120.2 87 64.4
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 4.6e-25 117.9 100 66.0
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 6.0e-25 117.5 95 64.2
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.9e-24 114.8 100 66.0
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.9e-24 114.8 100 66.0
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 3.9e-24 114.8 100 66.0
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 6.6e-24 114.0 99 62.6
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 1.1e-23 113.2 97 60.8
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.5e-23 112.8 100 61.0
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 9.6e-23 110.2 98 54.1
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 2.1e-22 109.0 97 58.8
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.8e-22 108.6 101 58.4
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 3.6e-22 108.2 87 59.8
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.1e-21 106.7 103 54.4
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 1.4e-21 106.3 97 61.9
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 1.8e-21 105.9 98 53.1
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 4.0e-21 104.8 97 61.9
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 4.0e-21 104.8 98 60.2
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 4.0e-21 104.8 67 70.1
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 5.3e-21 104.4 101 58.4
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 5.3e-21 104.4 81 60.5
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 5.3e-21 104.4 67 68.7
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 6.9e-21 104.0 101 54.5
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 6.9e-21 104.0 97 54.6
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 4.5e-20 101.3 98 55.1
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 7.6e-20 100.5 90 55.6
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 7.6e-20 100.5 65 70.8
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 9.9e-20 100.1 85 58.8
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 1.7e-19 99.4 88 61.4
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.2e-19 99.0 82 54.9
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 8.4e-19 97.1 81 54.3
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 8.4e-19 97.1 88 58.0
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.1e-18 96.7 94 52.1
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.4e-18 96.3 85 55.3
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 1.4e-18 96.3 77 59.7
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 1.4e-18 96.3 97 51.5
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.9e-18 95.9 99 51.5
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 1.9e-18 95.9 83 59.0
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.4e-18 95.5 94 51.1
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 2.4e-18 95.5 91 56.0
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 2.4e-18 95.5 100 51.0
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 3.2e-18 95.1 78 57.7
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 5.4e-18 94.4 87 54.0
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 5.4e-18 94.4 100 55.0
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 9.3e-18 93.6 90 50.0
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 9.3e-18 93.6 88 54.5
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.2e-17 93.2 100 48.0
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.2e-17 93.2 100 48.0
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 1.2e-17 93.2 93 54.8
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 4.6e-17 91.3 91 44.0
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 4.6e-17 91.3 83 53.0
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 4.6e-17 91.3 83 55.4
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 4.6e-17 91.3 97 54.6
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 7.9e-17 90.5 84 52.4
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 1.0e-16 90.1 86 51.2
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 1.0e-16 90.1 84 56.0
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.8e-16 89.4 90 48.9
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 3.0e-16 88.6 81 54.3
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 3.0e-16 88.6 99 54.5
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 3.0e-16 88.6 99 53.5
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 3.9e-16 88.2 99 50.5
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 3.9e-16 88.2 99 47.5
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 6.7e-16 87.4 97 46.4
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 6.7e-16 87.4 65 56.9
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 8.7e-16 87.0 98 48.0
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 8.7e-16 87.0 76 51.3
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.5e-15 86.3 98 43.9
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.9e-15 85.9 91 47.3
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.9e-15 85.9 87 54.0
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 2.5e-15 85.5 78 55.1
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 5.6e-15 84.3 92 44.6
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 7.4e-15 84.0 85 51.8
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 7.4e-15 84.0 88 46.6
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 7.4e-15 84.0 88 46.6
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 7.4e-15 84.0 88 46.6
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 7.4e-15 84.0 88 46.6
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 7.4e-15 84.0 63 57.1
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 7.4e-15 84.0 89 49.4
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 7.4e-15 84.0 99 42.4
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 7.4e-15 84.0 101 45.5
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 7.4e-15 84.0 88 46.6
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 9.6e-15 83.6 87 44.8
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 9.6e-15 83.6 88 45.5
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 9.6e-15 83.6 89 48.3
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 9.6e-15 83.6 84 46.4
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 1.3e-14 83.2 78 50.0
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.3e-14 83.2 89 47.2
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 1.6e-14 82.8 84 46.4
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.1e-14 82.4 108 43.5
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.1e-14 82.4 63 57.1
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 3.7e-14 81.6 92 43.5
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 3.7e-14 81.6 63 54.0
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 3.7e-14 81.6 92 43.5
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 4.8e-14 81.3 87 55.2
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 6.2e-14 80.9 85 45.9
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 1.1e-13 80.1 100 45.0
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 1.4e-13 79.7 63 49.2
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 3.1e-13 78.6 60 55.0
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 5.3e-13 77.8 86 40.7
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 1.5e-12 76.3 68 52.9
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.5e-12 76.3 52 61.5
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.5e-12 76.3 66 54.5
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 2.6e-12 75.5 87 47.1
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 2.6e-12 75.5 84 42.9
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.6e-12 75.5 85 48.2
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.4e-12 75.1 87 46.0
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 5.8e-12 74.3 81 40.7
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.8e-12 74.3 91 41.8
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.8e-12 74.3 86 47.7
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.0e-11 73.6 87 43.7
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.3e-11 73.2 97 45.4
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.3e-11 73.2 86 43.0
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 1.7e-11 72.8 79 43.0
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.7e-11 72.8 87 40.2
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 2.2e-11 72.4 82 40.2
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 2.2e-11 72.4 82 40.2
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 3.8e-11 71.6 81 44.4
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.8e-11 71.6 80 43.8
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 4.9e-11 71.2 82 40.2
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 4.9e-11 71.2 82 40.2
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 4.9e-11 71.2 92 46.7
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 7.1e-10 67.4 82 39.0
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.2e-09 66.6 87 44.8
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 2.7e-09 65.5 86 41.9
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.8e-08 62.8 86 38.4
Os09g0525500 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 1.1e-07 60.1 87 42.5
SEGI_28459 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 4.8e-06 54.7 83 36.1
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.2e-06 54.3 78 37.2
Zm00001eb319020 Zea mays HOM05D005649 ORTHO05D006837 8.2e-06 53.9 87 37.9


User provided reference genes

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