Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A12G179600 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.0e-114 416.8 215 100.0
Gohir.D12G182200 Gossypium hirsutum HOM05D004089 ORTHO05D004687 5.1e-90 334.7 176 99.4
Gorai.008G195500 Gossypium raimondii HOM05D004089 ORTHO05D004687 6.7e-90 334.3 176 98.9
Thecc.03G094700 Theobroma cacao HOM05D004089 ORTHO05D004687 1.9e-60 236.5 176 72.7
Duzib205G1783 Durio zibethinus HOM05D004089 ORTHO05D004687 3.4e-57 225.7 176 72.7
COL.COLO4_00682 Corchorus olitorius HOM05D004089 ORTHO05D004687 7.5e-57 224.6 175 69.7
Duzib068G1131 Durio zibethinus HOM05D004089 ORTHO05D004687 1.4e-55 220.3 176 67.6
Gohir.A07G070400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 2.7e-46 189.5 176 61.4
Gohir.D07G074900 Gossypium hirsutum HOM05D004089 ORTHO05D004687 2.7e-46 189.5 176 61.9
Gorai.001G079000 Gossypium raimondii HOM05D004089 ORTHO05D004687 3.5e-46 189.1 176 61.9
Manes.06G089200 Manihot esculenta HOM05D004089 ORTHO05D004687 1.9e-44 183.3 167 54.5
Gohir.D11G035700 Gossypium hirsutum HOM05D004089 ORTHO05D004687 7.3e-44 181.4 217 53.0
Gorai.007G038500 Gossypium raimondii HOM05D004089 ORTHO05D004687 1.2e-43 180.6 217 53.0
CSS0014968 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 1.6e-43 180.3 172 58.1
Gohir.A11G032333 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.6e-43 180.3 217 52.5
Gohir.A11G032400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.6e-43 180.3 217 52.5
Lj4g0011676 Lotus japonicus HOM05D004089 ORTHO05D004687 3.6e-43 179.1 180 55.0
Ciclev10020945m.g Citrus clementina HOM05D004089 ORTHO05D004687 6.2e-43 178.3 173 58.4
Lalb_Chr13g0303071 Lupinus albus HOM05D004089 ORTHO05D004687 6.2e-43 178.3 180 57.8
Dinv10661 Davidia involucrata HOM05D004089 ORTHO05D004687 1.8e-42 176.8 169 58.6
Glyma.06G196700 Glycine max HOM05D004089 ORTHO05D004687 2.3e-42 176.4 179 55.9
Manes.14G082100 Manihot esculenta HOM05D004089 ORTHO05D004687 3.1e-42 176.0 206 50.0
Glyma.04G165800 Glycine max HOM05D004089 ORTHO05D004687 4.0e-42 175.6 168 57.7
CiPaw.11G047700 Carya illinoinensis HOM05D004089 ORTHO05D004687 5.2e-42 175.3 173 58.4
CiPaw.12G011700 Carya illinoinensis HOM05D004089 ORTHO05D004687 5.2e-42 175.3 173 59.0
Prupe.5G198800 Prunus persica HOM05D004089 ORTHO05D004687 1.2e-41 174.1 172 57.6
QL10p017912 Quercus lobata HOM05D004089 ORTHO05D004687 1.5e-41 173.7 174 56.3
Lalb_Chr07g0178191 Lupinus albus HOM05D004089 ORTHO05D004687 3.4e-41 172.6 178 55.1
Medtr4g109020 Medicago truncatula HOM05D004089 ORTHO05D004687 3.4e-41 172.6 180 52.2
Glyma.17G102700 Glycine max HOM05D004089 ORTHO05D004687 4.4e-41 172.2 168 58.3
Phvul.009G184900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 4.4e-41 172.2 162 59.9
FAN13G1369 Fragaria x ananassa HOM05D004089 ORTHO05D004687 5.8e-41 171.8 173 55.5
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea HOM05D004089 ORTHO05D004687 9.8e-41 171.0 166 57.2
CSS0014802 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 1.7e-40 170.2 165 57.6
Ca_21804_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 1.7e-40 170.2 171 54.4
FAN08G0374 Fragaria x ananassa HOM05D004089 ORTHO05D004687 2.2e-40 169.9 172 55.2
CSS0037629 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 2.9e-40 169.5 165 57.6
FvH4_5g14500 Fragaria vesca HOM05D004089 ORTHO05D004687 2.9e-40 169.5 172 55.2
FAN18G2014 Fragaria x ananassa HOM05D004089 ORTHO05D004687 2.9e-40 169.5 172 55.2
Glyma.05G024600 Glycine max HOM05D004089 ORTHO05D004687 2.9e-40 169.5 170 57.1
TPR.G2017 Trifolium pratense HOM05D004089 ORTHO05D004687 2.9e-40 169.5 180 51.1
Haze_07654 Corylus avellana HOM05D004089 ORTHO05D004687 3.7e-40 169.1 172 60.5
VMungo1215G0778 Vigna mungo HOM05D004089 ORTHO05D004687 6.4e-40 168.3 170 56.5
Phvul.003G187900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 1.1e-39 167.5 170 54.7
RcHm_v2.0_Chr7g0182161 Rosa chinensis HOM05D004089 ORTHO05D004687 1.1e-39 167.5 174 55.2
VMungo1309G2967 Vigna mungo HOM05D004089 ORTHO05D004687 1.4e-39 167.2 162 58.0
Cfa019278 Carpinus fangiana HOM05D004089 ORTHO05D004687 1.9e-39 166.8 172 59.9
Psat4g049120 Pisum sativum HOM05D004089 ORTHO05D004687 1.6e-38 163.7 180 50.6
Rhsim08G0151100 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.6e-38 163.7 173 53.2
TAR629G0233 Trochodendron aralioides HOM05D004089 ORTHO05D004687 2.1e-38 163.3 170 55.9
DCAR_026035 Daucus carota HOM05D004089 ORTHO05D004687 4.6e-38 162.2 169 53.3
EL10Ac5g11067 Beta vulgaris HOM05D004089 ORTHO05D004687 3.9e-37 159.1 176 51.7
MD14G1205500 Malus domestica HOM05D004089 ORTHO05D004687 5.1e-37 158.7 179 52.0
Aqoxy3G03505 Aquilegia oxysepala HOM05D004089 ORTHO05D004687 6.6e-37 158.3 177 52.5
Lj1g0017851 Lotus japonicus HOM05D004089 ORTHO05D004687 3.3e-36 156.0 169 53.8
MD06G1197900 Malus domestica HOM05D004089 ORTHO05D004687 5.6e-36 155.2 172 50.0
PSO017G6425 Papaver somniferum HOM05D004089 ORTHO05D004687 2.1e-35 153.3 182 48.4
Eucgr.B00548 Eucalyptus grandis HOM05D004089 ORTHO05D004687 4.7e-35 152.1 179 52.5
Sed0006516 Sechium edule HOM05D004089 ORTHO05D004687 6.2e-35 151.8 176 52.8
PSO478G2558 Papaver somniferum HOM05D004089 ORTHO05D004687 8.1e-35 151.4 182 47.8
Medtr3g037110 Medicago truncatula HOM05D004089 ORTHO05D004687 1.1e-34 151.0 179 51.4
Cc04_g14350 Coffea canephora HOM05D004089 ORTHO05D004687 1.4e-34 150.6 172 50.6
Potri.015G060900 Populus trichocarpa HOM05D004089 ORTHO05D004687 8.9e-34 147.9 170 50.6
Nn3g17343 Nelumbo nucifera HOM05D004089 ORTHO05D004687 1.2e-33 147.5 173 52.0
Rhsim08G0151200 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.5e-33 147.1 176 50.0
Sabra15G0086100 Salix brachista HOM05D004089 ORTHO05D004687 2.0e-33 146.7 169 51.5
TWI60G1703 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 3.4e-33 146.0 179 48.6
Sed0015191 Sechium edule HOM05D004089 ORTHO05D004687 4.4e-33 145.6 176 51.1
PGR044G2522 Punica granatum HOM05D004089 ORTHO05D004687 5.8e-33 145.2 179 52.5
Atru.chr9.325 Acer truncatum HOM05D004089 ORTHO05D004687 7.6e-33 144.8 168 54.8
MBI19_g43436_MAGBIO Magnolia biondii HOM05D004089 ORTHO05D004687 9.9e-33 144.4 186 50.5
MELO3C002001.2 Cucumis melo HOM05D004089 ORTHO05D004687 2.9e-32 142.9 171 53.8
CsaV3_1G002580 Cucumis sativus L. HOM05D004089 ORTHO05D004687 3.8e-32 142.5 180 48.3
ClCG04G012070 Citrullus lanatus HOM05D004089 ORTHO05D004687 4.9e-32 142.1 164 52.4
MELO3C017194.2 Cucumis melo HOM05D004089 ORTHO05D004687 6.4e-32 141.7 181 48.1
MSTRG.4442 Avicennia marina HOM05D004089 ORTHO05D004687 8.4e-32 141.4 187 46.5
MSTRG.11370 Avicennia marina HOM05D004089 ORTHO05D004687 1.4e-31 140.6 187 45.5
Lj5P107T92 Lonicera japonica HOM05D004089 ORTHO05D004687 2.4e-31 139.8 162 48.8
CsaV3_1G005700 Cucumis sativus L. HOM05D004089 ORTHO05D004687 3.2e-31 139.4 171 50.9
Psat5g199240 Pisum sativum HOM05D004089 ORTHO05D004687 3.2e-31 139.4 179 49.7
TWI15G0089 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 3.2e-31 139.4 184 47.8
Potri.012G068000 Populus trichocarpa HOM05D004089 ORTHO05D004687 7.1e-31 138.3 163 49.7
TWI81G0628 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 9.2e-31 137.9 184 47.3
ClCG06G015980 Citrullus lanatus HOM05D004089 ORTHO05D004687 2.7e-30 136.3 189 45.0
PGSC0003DMG400024664 Solanum tuberosum HOM05D004089 ORTHO05D004687 6.0e-30 135.2 175 49.7
DCAR_021516 Daucus carota HOM05D004089 ORTHO05D004687 1.3e-29 134.0 184 44.0
Oeu046997.1 Olea europaea HOM05D004089 ORTHO05D004687 1.7e-29 133.7 178 46.1
Hma1.2p1_0060F.1_g033460 Hydrangea macrophylla HOM05D004089 ORTHO05D004687 3.0e-29 132.9 170 44.7
CANSAT80G2067 Cannabis sativa HOM05D004089 ORTHO05D004687 3.9e-29 132.5 178 43.3
TAR371G1138 Trochodendron aralioides HOM05D004089 ORTHO05D004687 5.1e-29 132.1 145 54.5
Oeu052462.1 Olea europaea HOM05D004089 ORTHO05D004687 8.6e-29 131.3 174 48.9
PSO063G0630 Papaver somniferum HOM05D004089 ORTHO05D004687 1.9e-28 130.2 181 47.0
Migut.D01757 Erythranthe guttata HOM05D004089 ORTHO05D004687 2.5e-28 129.8 172 45.9
THA.LOC104801435 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 2.5e-28 129.8 161 50.3
Sopen03g034670 Solanum pennellii HOM05D004089 ORTHO05D004687 3.3e-28 129.4 169 49.1
Solyc06g069680.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 4.3e-28 129.0 170 47.1
Oeu047272.1 Olea europaea HOM05D004089 ORTHO05D004687 5.6e-28 128.6 173 48.0
Peaxi162Scf00274g10024 Petunia axillaris HOM05D004089 ORTHO05D004687 9.6e-28 127.9 172 44.8
Sopen06g026980 Solanum pennellii HOM05D004089 ORTHO05D004687 9.6e-28 127.9 170 46.5
AT5G61340 Arabidopsis thaliana HOM05D004089 ORTHO05D004687 1.6e-27 127.1 161 49.7
Solyc03g115690.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 2.8e-27 126.3 169 48.5
Lsat_1_v5_gn_4_109001 Lactuca sativa HOM05D004089 ORTHO05D004687 6.2e-27 125.2 155 49.7
AL8G38000 Arabidopsis lyrata HOM05D004089 ORTHO05D004687 1.1e-26 124.4 161 47.2
Eucgr.K02492 Eucalyptus grandis HOM05D004089 ORTHO05D004687 1.4e-26 124.0 140 55.7
HanXRQChr09g0270961 Helianthus annuus HOM05D004089 ORTHO05D004687 1.4e-26 124.0 157 47.1
BcaB04g19907 Brassica carinata HOM05D004089 ORTHO05D004687 3.1e-26 122.9 168 47.0
Carub.0008s2201 Capsella rubella HOM05D004089 ORTHO05D004687 6.9e-26 121.7 161 47.2
Sed0010910 Sechium edule HOM05D004089 ORTHO05D004687 1.5e-25 120.6 172 47.1
Dinv38750 Davidia involucrata HOM05D004089 ORTHO05D004687 2.0e-25 120.2 149 49.7
BraA03t13814Z Brassica rapa HOM05D004089 ORTHO05D004687 4.4e-25 119.0 168 47.0
HanXRQChr16g0502591 Helianthus annuus HOM05D004089 ORTHO05D004687 4.4e-25 119.0 157 45.9
DCAR_016583 Daucus carota HOM05D004089 ORTHO05D004687 9.9e-25 117.9 183 41.0
Migut.I00216 Erythranthe guttata HOM05D004089 ORTHO05D004687 9.9e-25 117.9 168 42.9
Sc04g0002900 Simmondsia chinensis HOM05D004089 ORTHO05D004687 1.3e-24 117.5 173 43.4
CARHR275100 Cardamine hirsuta HOM05D004089 ORTHO05D004687 2.9e-24 116.3 162 46.3
PGR083G0705 Punica granatum HOM05D004089 ORTHO05D004687 6.4e-24 115.2 165 44.2
A03p46950 Brassica napus HOM05D004089 ORTHO05D004687 8.4e-24 114.8 168 45.8
A09p07290 Brassica napus HOM05D004089 ORTHO05D004687 1.4e-23 114.0 168 44.6
BolC7t45022H Brassica oleracea HOM05D004089 ORTHO05D004687 3.2e-23 112.8 168 45.8
Haze_14490 Corylus avellana HOM05D004089 ORTHO05D004687 3.2e-23 112.8 161 46.0
Sp2g24550 Schrenkiella parvula HOM05D004089 ORTHO05D004687 4.2e-23 112.5 161 48.4
C07p44990 Brassica napus HOM05D004089 ORTHO05D004687 5.4e-23 112.1 168 46.4
C09p08150 Brassica napus HOM05D004089 ORTHO05D004687 7.1e-23 111.7 168 46.4
BcaC03g18095 Brassica carinata HOM05D004089 ORTHO05D004687 1.2e-22 110.9 170 44.7
Dinv11500 Davidia involucrata HOM05D001066 ORTHO05D000891 4.6e-22 109.0 169 43.8
SalBow7G3788 Salvia bowleyana HOM05D004089 ORTHO05D004687 3.9e-21 105.9 167 41.3
unitig_26.g9653 Utricularia gibba HOM05D004089 ORTHO05D004687 1.5e-20 104.0 219 38.8
GSVIVG01011469001 Vitis vinifera HOM05D004089 ORTHO05D004687 1.9e-20 103.6 194 38.1
HanXRQChr04g0107211 Helianthus annuus HOM05D004089 ORTHO05D004687 2.5e-20 103.2 187 39.6
SGA_v2.0_scaffold25G10938 Striga asiatica HOM05D004089 ORTHO05D004687 9.6e-20 101.3 183 38.3
Aa31LG11G2070 Aethionema arabicum HOM05D004089 ORTHO05D004687 1.3e-19 100.9 169 42.0
BcaB07g29822 Brassica carinata HOM05D004089 ORTHO05D004687 1.3e-19 100.9 146 46.6
QL02p084965 Quercus lobata HOM05D004089 ORTHO05D004687 1.3e-19 100.9 152 42.8
SGA_v2.0_scaffold7G04046 Striga asiatica HOM05D004089 ORTHO05D004687 2.8e-19 99.8 191 36.1
Thhalv10005448m.g Eutrema salsugineum HOM05D004089 ORTHO05D004687 8.1e-19 98.2 168 41.7
Lsat_1_v5_gn_1_13901 Lactuca sativa HOM05D004089 ORTHO05D004687 2.4e-18 96.7 187 39.0
Duzib147G1274 Durio zibethinus HOM05D004089 ORTHO05D004687 3.1e-18 96.3 158 43.7
Thecc.04G088100 Theobroma cacao HOM05D004089 ORTHO05D004687 3.1e-18 96.3 159 43.4
unitig_749.g14136 Utricularia gibba HOM05D004089 ORTHO05D004687 5.3e-18 95.5 175 40.6
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 9.0e-18 94.7 152 42.8
Duzib264G0571 Durio zibethinus HOM05D004089 ORTHO05D004687 1.2e-17 94.4 160 41.2
BcaC04g23456 Brassica carinata HOM05D004089 ORTHO05D004687 2.2e-16 90.1 168 38.1
Zm00001eb136250 Zea mays HOM05D004089 ORTHO05D004687 3.2e-15 86.3 179 34.6
unitig_749.g13440 Utricularia gibba HOM05D004089 ORTHO05D004687 7.1e-15 85.1 168 38.7
CiPaw.03G021500 Carya illinoinensis HOM05D004089 ORTHO05D004687 2.1e-14 83.6 157 40.1
Gohir.D12G052650 Gossypium hirsutum HOM05D004089 ORTHO05D004687 2.1e-14 83.6 48 83.3
Sabra04G0077800 Salix brachista HOM05D004089 ORTHO05D004687 1.0e-13 81.3 193 35.8
ATR0730G119 Amborella trichopoda HOM05D004089 ORTHO05D004687 1.8e-13 80.5 163 38.0
Os12g0577200 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 3.0e-13 79.7 166 34.9
Potri.004G102800 Populus trichocarpa HOM05D004089 ORTHO05D004687 5.1e-13 79.0 170 38.2
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 8.7e-13 78.2 175 36.6
BraA02t09111Z Brassica rapa HOM05D004089 ORTHO05D004687 8.7e-13 78.2 175 36.6
A02p41700 Brassica napus HOM05D002313 ORTHO05D004687 1.5e-12 77.4 175 36.0
Zm00001eb029590 Zea mays HOM05D004089 ORTHO05D004687 2.5e-12 76.6 177 35.0
Manes.02G049400 Manihot esculenta HOM05D004089 ORTHO05D004687 1.4e-10 70.9 173 34.1
THA.LOC104818514 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 1.4e-10 70.9 143 40.6
Os12g0507400 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 2.4e-10 70.1 116 37.1
Manes.01G100800 Manihot esculenta HOM05D004089 ORTHO05D004687 2.9e-08 63.2 139 37.4
AUR62008468 Chenopodium quinoa HOM05D000001 ORTHO05D011953 1.4e-07 60.8 140 35.0
Zm00001eb264770 Zea mays HOM05D004089 ORTHO05D004687 9.3e-07 58.2 166 29.5


User provided reference genes

Program Settings