Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A12G097000 Gossypium hirsutum HOM05D004530 ORTHO05D005839 0.0e+00 1082.4 542 100.0
Gohir.D12G099900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 2.4e-245 852.0 615 75.3
Gorai.008G108800 Gossypium raimondii HOM05D004530 ORTHO05D005839 1.0e-243 846.7 616 75.2
Thecc.01G394900 Theobroma cacao HOM05D004530 ORTHO05D005839 8.2e-185 651.0 615 58.7
Duzib138G0269 Durio zibethinus HOM05D004530 ORTHO05D005839 8.5e-182 641.0 635 57.0
Gohir.A08G138600 Gossypium hirsutum HOM05D004530 ORTHO05D005839 2.6e-175 619.4 619 56.5
Gorai.004G166100 Gossypium raimondii HOM05D004530 ORTHO05D005839 1.7e-174 616.7 626 56.2
COL.COLO4_12407 Corchorus olitorius HOM05D004530 ORTHO05D005839 2.5e-173 612.8 615 56.1
Duzib133G0606 Durio zibethinus HOM05D004530 ORTHO05D005839 1.5e-170 603.6 630 55.1
Gorai.004G070300 Gossypium raimondii HOM05D004530 ORTHO05D005839 1.4e-144 517.3 592 52.0
Gohir.D08G159900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 1.8e-139 500.4 472 57.2
QL04p030285 Quercus lobata HOM05D004530 ORTHO05D005839 2.5e-133 479.9 625 45.8
Atru.chr5.126 Acer truncatum HOM05D004530 ORTHO05D005839 1.8e-131 473.8 626 45.5
Ciclev10019258m.g Citrus clementina HOM05D004530 ORTHO05D005839 3.5e-127 459.5 622 45.2
Manes.01G274600 Manihot esculenta HOM05D004530 ORTHO05D005839 7.8e-127 458.4 629 45.0
Haze_02848 Corylus avellana HOM05D004530 ORTHO05D005839 9.5e-125 451.4 618 45.1
GSVIVG01018280001 Vitis vinifera HOM05D004530 ORTHO05D005839 3.1e-123 446.4 623 43.7
Gohir.D08G067550 Gossypium hirsutum HOM05D004530 ORTHO05D005839 5.8e-122 442.2 565 48.7
MD07G1109200 Malus domestica HOM05D004530 ORTHO05D005839 1.7e-118 430.6 617 42.5
Lj3g0003084 Lotus japonicus HOM05D004530 ORTHO05D005839 2.3e-118 430.3 609 43.3
TAR375G0493 Trochodendron aralioides HOM05D004530 ORTHO05D005839 2.3e-118 430.3 628 42.7
CiPaw.13G026100 Carya illinoinensis HOM05D004530 ORTHO05D005839 3.9e-118 429.5 584 43.5
TWI59G1339 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 6.6e-118 428.7 626 42.0
TAR629G3313 Trochodendron aralioides HOM05D004530 ORTHO05D005839 2.1e-116 423.7 630 41.1
RcHm_v2.0_Chr1g0347921 Rosa chinensis HOM05D004530 ORTHO05D005839 4.7e-116 422.5 596 41.4
PGR042G2176 Punica granatum HOM05D004530 ORTHO05D005839 1.1e-115 421.4 631 42.3
Eucgr.E01549 Eucalyptus grandis HOM05D004530 ORTHO05D005839 1.8e-115 420.6 629 42.9
MD02G1212800 Malus domestica HOM05D004530 ORTHO05D005839 9.9e-114 414.8 601 42.4
Hma1.2p1_0041F.1_g025350 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 1.4e-112 411.0 655 40.0
Phvul.010G049900 Phaseolus vulgaris HOM05D004530 ORTHO05D005839 3.2e-112 409.8 611 41.2
Glyma.10G120400 Glycine max HOM05D004530 ORTHO05D005839 5.4e-112 409.1 611 40.4
Ca_25804_v3 Cicer arietinum L. HOM05D004530 ORTHO05D005839 3.5e-111 406.4 613 40.8
Gohir.A08G058400 Gossypium hirsutum HOM05D004530 ORTHO05D005839 3.5e-111 406.4 574 46.3
Dinv44062 Davidia involucrata HOM05D004530 ORTHO05D005839 6.0e-111 405.6 611 42.2
FAN01G0552 Fragaria x ananassa HOM05D004530 ORTHO05D005839 3.9e-110 402.9 617 40.0
Actinidia12143 Actinidia chinensis HOM05D004530 ORTHO05D005839 6.6e-110 402.1 628 40.4
FvH4_7g10200 Fragaria vesca HOM05D004530 ORTHO05D005839 1.9e-109 400.6 618 39.8
FAN10G1666 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.9e-109 400.6 619 39.9
MELO3C005943.2 Cucumis melo HOM05D004530 ORTHO05D005839 4.3e-109 399.4 631 40.7
CsaV3_3G007220 Cucumis sativus L. HOM05D004530 ORTHO05D005839 1.2e-108 397.9 625 41.0
FAN06G5079 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.2e-108 397.9 618 39.5
FAN10G4098 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.2e-108 397.9 620 39.7
FAN03G1354 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.1e-108 397.1 619 39.7
Medtr8g006895 Medicago truncatula HOM05D004530 ORTHO05D005839 4.7e-108 396.0 624 40.4
Rhsim07G0036000 Rhododendron simsii HOM05D004530 ORTHO05D005839 4.7e-108 396.0 624 40.9
vmacro13497 Vaccinium macrocarpon HOM05D004530 ORTHO05D005839 4.7e-108 396.0 614 40.1
Potri.014G047600 Populus trichocarpa HOM05D004530 ORTHO05D005839 1.8e-107 394.0 624 40.7
Glyma.20G070800 Glycine max HOM05D004530 ORTHO05D005839 6.9e-107 392.1 597 40.0
Lalb_Chr12g0210571 Lupinus albus HOM05D004530 ORTHO05D005839 1.3e-105 387.9 622 39.4
Sabra14G0034600 Salix brachista HOM05D004530 ORTHO05D005839 3.8e-105 386.3 624 40.2
arahy.Tifrunner.gnm1.ann1.WR8IC8 Arachis hypogaea HOM05D004530 ORTHO05D005839 4.9e-105 386.0 646 38.4
Ah.05g173100 Amaranthus hybridus HOM05D004530 ORTHO05D005839 6.4e-105 385.6 620 41.1
TPR.G33134 Trifolium pratense HOM05D004530 ORTHO05D005839 9.3e-104 381.7 623 39.5
arahy.Tifrunner.gnm1.ann1.BH8PB4 Arachis hypogaea HOM05D004530 ORTHO05D005839 1.2e-103 381.3 646 38.1
VMungo0331G0336 Vigna mungo HOM05D004530 ORTHO05D005839 1.2e-103 381.3 596 40.1
BcaB03g13633 Brassica carinata HOM05D004530 ORTHO05D005839 1.6e-103 380.9 596 41.4
Hund27405 Selenicereus undatus HOM05D004530 ORTHO05D005839 7.8e-103 378.6 599 39.1
C05p00080 Brassica napus HOM05D004530 ORTHO05D005839 3.9e-102 376.3 595 41.7
BolC5t28795H Brassica oleracea HOM05D004530 ORTHO05D005839 3.9e-102 376.3 595 41.7
A10p00110 Brassica napus HOM05D004530 ORTHO05D005839 8.7e-102 375.2 594 41.9
THA.LOC104817000 Tarenaya hassleriana HOM05D004530 ORTHO05D005839 1.5e-101 374.4 615 39.7
Lalb_Chr07g0195421 Lupinus albus HOM05D004530 ORTHO05D005839 1.9e-101 374.0 622 37.9
AUR62013743 Chenopodium quinoa HOM05D004530 ORTHO05D005839 2.5e-101 373.6 623 37.1
BraA10t42289Z Brassica rapa HOM05D004530 ORTHO05D005839 3.3e-101 373.2 594 41.8
Thhalv10007106m.g Eutrema salsugineum HOM05D004530 ORTHO05D005839 4.3e-101 372.9 594 41.4
Sed0010787 Sechium edule HOM05D004530 ORTHO05D005839 4.3e-101 372.9 638 38.1
Aqoxy7G00763 Aquilegia oxysepala HOM05D004530 ORTHO05D005839 1.6e-100 370.9 625 39.4
Psat4g224840 Pisum sativum HOM05D004530 ORTHO05D005839 3.6e-100 369.8 597 38.5
Hund17085 Selenicereus undatus HOM05D004530 ORTHO05D005839 4.8e-100 369.4 652 35.9
PSO732G0778 Papaver somniferum HOM05D004530 ORTHO05D005839 1.8e-99 367.5 635 38.4
PSO675G1201 Papaver somniferum HOM05D004530 ORTHO05D005839 1.2e-98 364.8 635 38.4
TWI14G0541 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 2.0e-98 364.0 630 38.9
MSTRG.20690 Avicennia marina HOM05D004530 ORTHO05D005839 3.4e-98 363.2 609 38.8
CARHR000210 Cardamine hirsuta HOM05D004530 ORTHO05D005839 3.4e-98 363.2 592 39.5
EL10Ac1g00762 Beta vulgaris HOM05D004530 ORTHO05D005839 2.2e-97 360.5 659 36.4
Prupe.2G131900 Prunus persica HOM05D004530 ORTHO05D005839 1.1e-96 358.2 449 44.5
AL1G10110 Arabidopsis lyrata HOM05D004530 ORTHO05D005839 1.4e-96 357.8 592 40.0
AUR62023408 Chenopodium quinoa HOM05D004530 ORTHO05D005839 3.5e-95 353.2 596 37.6
Nn1g00849 Nelumbo nucifera HOM05D004530 ORTHO05D005839 8.7e-94 348.6 603 36.0
HanXRQChr03g0093061 Helianthus annuus HOM05D004530 ORTHO05D005839 1.5e-93 347.8 616 36.7
SalBow5G0820 Salvia bowleyana HOM05D004530 ORTHO05D005839 1.5e-93 347.8 661 36.2
Carub.0001s0010 Capsella rubella HOM05D004530 ORTHO05D005839 3.3e-93 346.7 585 38.8
Nn6g33827 Nelumbo nucifera HOM05D004530 ORTHO05D005839 5.6e-93 345.9 629 35.9
AUR62043872 Chenopodium quinoa HOM05D004530 ORTHO05D005839 3.6e-92 343.2 617 35.8
Lsat_1_v5_gn_3_126420 Lactuca sativa HOM05D004530 ORTHO05D005839 3.6e-92 343.2 613 36.9
Potri.002G137800 Populus trichocarpa HOM05D004530 ORTHO05D005839 5.3e-91 339.3 437 44.2
DCAR_029469 Daucus carota HOM05D004530 ORTHO05D005839 7.6e-90 335.5 594 36.2
PSO832G0798 Papaver somniferum HOM05D004530 ORTHO05D005839 1.7e-89 334.3 633 36.3
Migut.B01535 Erythranthe guttata HOM05D004530 ORTHO05D005839 6.4e-89 332.4 562 38.8
ATR0057G115 Amborella trichopoda HOM05D004530 ORTHO05D005839 6.0e-87 325.9 629 33.7
MBI04_g41763_MAGBIO Magnolia biondii HOM05D004530 ORTHO05D005839 7.9e-87 325.5 670 34.5
CAN.G1473.6 Capsicum annuum HOM05D004530 ORTHO05D005839 1.0e-86 325.1 608 35.9
ECA240G1126 Erigeron canadensis HOM05D004530 ORTHO05D005839 6.7e-86 322.4 618 35.6
Solyc01g090230.3 Solanum lycopersicum HOM05D004530 ORTHO05D005839 1.5e-85 321.2 609 36.5
Sopen01g036030 Solanum pennellii HOM05D004530 ORTHO05D005839 7.4e-85 318.9 606 35.6
AT1G02120 Arabidopsis thaliana HOM05D004530 ORTHO05D005839 2.8e-84 317.0 427 43.8
Sc26g0001580 Simmondsia chinensis HOM05D004530 ORTHO05D005839 2.8e-84 317.0 440 40.9
FAN06G2217 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.1e-83 315.1 618 35.6
Cc02_g25120 Coffea canephora HOM05D004530 ORTHO05D005839 2.0e-82 310.8 548 36.3
Zm00001eb105340 Zea mays HOM05D004530 ORTHO05D005839 1.2e-74 285.0 608 33.6
CDE06G0463 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 5.9e-74 282.7 583 32.6
Zm00001eb321770 Zea mays HOM05D004530 ORTHO05D005839 2.9e-73 280.4 617 33.5
ClCG05G000120 Citrullus lanatus HOM05D004530 ORTHO05D005839 5.1e-70 269.6 574 34.0
unitig_26.g9593 Utricularia gibba HOM05D004530 ORTHO05D005839 1.7e-65 254.6 590 33.2
SGA_v2.0_scaffold52G19226 Striga asiatica HOM05D004530 ORTHO05D005839 3.0e-62 243.8 591 33.7
Mapoly0083s0023 Marchantia polymorpha HOM05D004530 ORTHO05D005839 3.9e-62 243.4 662 30.5
Pp3c9_25660 Physcomitrium patens HOM05D004530 ORTHO05D005839 3.7e-60 236.9 657 29.4
CSS0020970 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 4.8e-60 236.5 580 34.1
HPP92_022509 Vanilla planifolia HOM05D004530 ORTHO05D005839 1.2e-58 231.9 413 36.8
CSS0024507 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 1.5e-58 231.5 596 32.4
CDE11G0737 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 2.6e-58 230.7 433 35.1
Aa31LG1G11480 Aethionema arabicum HOM05D004530 ORTHO05D005839 1.8e-54 218.0 342 41.2
SMO228G0106 Selaginella moellendorffii HOM05D004530 ORTHO05D005839 4.5e-50 203.4 573 29.3
AagrBONN_evm.TU.Sc2ySwM_117.1176 Anthoceros agrestis HOM05D004530 ORTHO05D005839 1.8e-43 181.4 677 26.0
Nitab4.5_0000920g0020 Nicotiana tabacum HOM05D004530 ORTHO05D005839 3.1e-43 180.6 356 36.0
Lj9A557G31 Lonicera japonica HOM05D004530 ORTHO05D005839 5.9e-42 176.4 292 38.4
Nitab4.5_0007027g0030 Nicotiana tabacum HOM05D004530 ORTHO05D005839 6.5e-41 172.9 316 37.3
Cpa.g.sc22.81 Carica papaya HOM05D004530 ORTHO05D005839 1.9e-40 171.4 192 50.5
CBR_g3459 Chara braunii HOM05D004530 ORTHO05D000353 3.2e-40 170.6 422 27.3
CDE06G1928 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 4.4e-37 160.2 338 33.4
Ah.05g174020 Amaranthus hybridus HOM05D004530 ORTHO05D005839 7.0e-35 152.9 280 39.3
TPR.G23922 Trifolium pratense HOM05D004530 ORTHO05D005839 1.2e-34 152.1 210 42.4
Aa31LG1G11490 Aethionema arabicum HOM05D004530 ORTHO05D005839 3.2e-32 144.1 277 38.6
SEGI_20424 Sequoiadendron giganteum HOM05D004530 ORTHO05D005839 7.5e-29 132.9 314 30.6
Os07g0491600 Oryza sativa ssp. japonica HOM05D004530 ORTHO05D005839 1.3e-28 132.1 258 33.3
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 3.7e-28 130.6 296 31.8
Gorai.008G121000 Gossypium raimondii HOM05D004530 ORTHO05D005839 9.2e-27 125.9 135 49.6
Gohir.D12G111650 Gossypium hirsutum HOM05D004530 ORTHO05D005839 1.2e-26 125.6 132 50.8
Ah.05g174030 Amaranthus hybridus HOM05D004530 ORTHO05D005839 3.5e-26 124.0 181 43.1
Peaxi162Scf00475g00418 Petunia axillaris HOM05D004530 ORTHO05D005839 2.0e-21 108.2 241 34.4
CiPaw.03G262200 Carya illinoinensis HOM05D004530 ORTHO05D005839 6.4e-20 103.2 138 42.8
Cc00_g35630 Coffea canephora HOM05D004530 ORTHO05D005839 1.2e-18 99.0 212 35.4
Cre16.g664050 Chlamydomonas reinhardtii HOM05D004530 ORTHO05D005839 3.9e-17 94.0 415 24.8
PRCOL_00001515 Prasinoderma coloniale HOM05D004530 ORTHO05D005839 2.8e-15 87.8 508 21.9
Cpa.g.sc22.80 Carica papaya HOM05D004530 ORTHO05D005839 3.6e-15 87.4 147 43.5
Lj7A546T14 Lonicera japonica HOM05D004530 ORTHO05D005839 8.0e-15 86.3 155 34.2
CDE06G0904 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 9.8e-13 79.3 55 61.8
Cfa011069 Carpinus fangiana HOM05D004530 ORTHO05D005839 5.4e-11 73.6 76 55.3
Hma1.2p1_0041F.1_g025340 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 9.2e-11 72.8 77 51.9
Lj7A546T15 Lonicera japonica HOM05D004530 ORTHO05D005839 2.0e-10 71.6 134 41.0
CDE07G0055 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 3.0e-09 67.8 104 37.5
RcHm_v2.0_Chr1g0323881 Rosa chinensis HOM05D000518 ORTHO05D037482 1.9e-08 65.1 151 32.5
PRCOL_00002228 Prasinoderma coloniale HOM05D004530 ORTHO05D005839 1.4e-06 58.9 190 24.2
Sabra16G0008900 Salix brachista HOM05D002176 ORTHO05D002598 1.8e-06 58.5 412 22.1
Migut.B01536 Erythranthe guttata HOM05D004530 ORTHO05D005839 4.0e-06 57.4 48 54.2


User provided reference genes

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