Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.3e-155 551.2 324 100.0
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 8.4e-145 517.3 324 94.4
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.5e-144 514.6 324 95.1
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 1.2e-98 364.0 378 66.1
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 7.5e-93 344.7 375 63.7
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 1.1e-91 340.9 378 61.1
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 8.6e-81 304.7 370 55.4
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.3e-76 290.8 364 52.5
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.7e-76 289.3 369 52.3
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.1e-75 285.8 369 52.0
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 1.6e-71 273.9 384 52.6
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.8e-71 273.1 381 57.2
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 7.6e-69 265.0 386 53.6
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 6.4e-68 261.9 363 49.3
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 4.1e-67 259.2 365 53.4
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 3.5e-66 256.1 372 47.3
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 7.8e-66 255.0 384 51.6
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 3.0e-65 253.1 379 46.7
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 3.9e-65 252.7 375 52.5
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 1.9e-64 250.4 371 56.1
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 2.5e-64 250.0 376 55.1
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.5e-64 250.0 363 52.3
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 4.3e-64 249.2 368 50.8
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.3e-64 249.2 356 52.5
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 5.6e-64 248.8 373 48.0
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.2e-63 247.7 361 54.0
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.6e-63 246.1 440 44.5
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.2e-63 245.4 443 44.7
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 8.1e-63 245.0 371 47.2
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.4e-62 244.2 380 51.8
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.0e-62 242.7 451 44.8
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 6.8e-62 241.9 383 51.2
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.0e-61 240.4 380 49.7
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.6e-61 240.0 363 52.6
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 3.4e-61 239.6 352 50.6
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 4.4e-61 239.2 378 50.0
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 5.8e-61 238.8 361 48.2
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 7.6e-61 238.4 377 53.8
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 9.9e-61 238.0 374 51.3
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.7e-60 237.3 378 51.1
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 2.2e-60 236.9 361 44.3
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 2.9e-60 236.5 352 52.0
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 6.4e-60 235.3 387 51.2
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 6.4e-60 235.3 375 51.7
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 6.4e-60 235.3 374 54.3
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.9e-59 233.8 354 49.7
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.9e-59 233.8 359 45.4
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.4e-59 233.4 367 50.4
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 4.2e-59 232.6 371 50.9
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 4.2e-59 232.6 372 50.8
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 4.2e-59 232.6 361 46.0
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 5.4e-59 232.3 364 54.1
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 9.3e-59 231.5 320 51.2
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 9.3e-59 231.5 368 45.9
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.2e-58 231.1 405 47.4
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.6e-58 230.7 358 52.5
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.1e-58 230.3 390 51.8
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 6.0e-58 228.8 393 49.9
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 7.8e-58 228.4 380 48.4
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 2.3e-57 226.9 354 53.4
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.0e-57 226.5 320 50.6
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 3.9e-57 226.1 357 48.2
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 5.1e-57 225.7 396 48.5
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 8.7e-57 224.9 343 49.6
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 8.7e-57 224.9 357 52.9
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 1.1e-56 224.6 354 44.9
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 5.6e-56 222.2 386 49.2
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 7.3e-56 221.9 383 45.4
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 7.3e-56 221.9 360 51.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 9.6e-56 221.5 346 49.1
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.1e-55 220.3 364 50.5
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 2.8e-55 219.9 387 45.7
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 4.8e-55 219.2 349 53.0
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 6.2e-55 218.8 388 49.5
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 2.4e-54 216.9 363 44.1
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 2.4e-54 216.9 381 47.0
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 4.0e-54 216.1 377 41.6
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 4.0e-54 216.1 375 50.4
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 1.2e-53 214.5 372 49.5
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 2.0e-53 213.8 362 48.9
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 2.6e-53 213.4 360 49.2
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 3.4e-53 213.0 383 44.1
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 5.8e-53 212.2 321 52.0
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 7.6e-53 211.8 372 51.3
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.3e-52 211.1 367 48.0
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.3e-52 211.1 369 43.4
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.3e-52 211.1 369 45.3
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 2.4e-51 206.8 363 44.1
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 1.6e-50 204.1 370 50.8
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.0e-49 201.4 371 42.0
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 2.3e-49 200.3 351 51.6
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 2.3e-49 200.3 355 47.0
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 3.9e-49 199.5 355 53.2
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 3.9e-49 199.5 361 52.1
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.1e-49 199.1 350 49.4
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 1.1e-48 198.0 353 49.9
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.9e-48 197.2 377 41.4
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 4.3e-48 196.1 377 47.7
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 3.6e-47 193.0 333 47.1
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 8.1e-47 191.8 345 42.0
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 1.1e-46 191.4 337 40.4
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.4e-46 190.3 351 41.0
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.3e-46 189.1 365 40.5
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 5.3e-46 189.1 366 48.9
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 6.9e-46 188.7 396 47.7
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 2.0e-45 187.2 358 41.6
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 5.8e-45 185.7 355 43.9
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 5.8e-45 185.7 352 42.6
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 7.6e-45 185.3 238 53.4
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 1.7e-44 184.1 335 49.0
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 3.8e-44 183.0 296 47.6
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 6.4e-44 182.2 359 40.4
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.4e-43 181.0 320 52.2
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 2.4e-43 180.3 317 46.7
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 4.2e-43 179.5 362 39.8
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 7.9e-42 175.3 360 39.7
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.5e-40 170.2 347 39.5
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 4.3e-40 169.5 187 61.0
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 7.4e-40 168.7 366 45.1
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 7.4e-40 168.7 356 42.7
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 2.1e-39 167.2 349 40.7
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 4.8e-39 166.0 356 39.9
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.4e-38 164.5 336 39.3
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 6.9e-38 162.2 237 51.1
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 6.9e-38 162.2 313 40.9
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 3.8e-36 156.4 333 41.1
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.8e-36 156.4 358 35.5
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 1.4e-35 154.5 319 39.5
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 3.2e-35 153.3 349 40.4
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 5.5e-35 152.5 209 49.3
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 9.3e-35 151.8 374 43.9
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.2e-34 151.4 374 35.3
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 1.0e-33 148.3 310 39.7
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 2.3e-33 147.1 325 45.5
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 5.1e-33 146.0 362 41.4
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 8.7e-33 145.2 306 36.3
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 1.5e-32 144.4 336 43.8
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 5.7e-32 142.5 366 39.3
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.3e-31 141.4 350 36.6
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 2.8e-31 140.2 384 35.7
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.8e-30 137.5 204 49.0
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 4.1e-30 136.3 230 45.2
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 4.1e-30 136.3 337 37.7
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 2.2e-28 130.6 227 43.6
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 6.5e-28 129.0 341 38.1
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.4e-27 127.9 206 47.6
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 1.4e-27 127.9 315 34.6
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 3.2e-27 126.7 303 35.6
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 4.2e-27 126.3 215 43.7
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 4.2e-27 126.3 215 43.7
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 5.5e-27 125.9 215 44.2
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 5.5e-27 125.9 215 44.2
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 7.1e-27 125.6 379 33.5
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.2e-26 124.8 242 40.1
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 4.6e-26 122.9 362 33.4
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 6.1e-26 122.5 329 35.0
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 5.1e-25 119.4 227 41.4
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 6.3e-23 112.5 205 46.8
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 1.4e-22 111.3 261 45.6
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 1.8e-22 110.9 138 59.4
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.8e-22 110.9 316 35.1
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 9.0e-22 108.6 307 34.5
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.3e-20 104.8 293 34.1
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.1e-19 101.7 293 33.8
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.9e-19 100.9 139 48.2
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.6e-18 97.8 58 89.7
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.6e-18 96.7 58 87.9
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 4.8e-15 86.3 180 38.9
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.5e-13 81.3 315 29.5
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 3.2e-11 73.6 62 56.5
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 5.5e-11 72.8 336 31.8
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 7.2e-11 72.4 318 37.7
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 7.2e-11 72.4 318 37.7
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 5.1e-09 66.2 137 40.1
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.3e-08 63.5 358 34.4
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 9.7e-08 62.0 304 28.0
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 6.3e-07 59.3 117 42.7


User provided reference genes

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