Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A12G055000 Gossypium hirsutum HOM05D018350 ORTHO05D020508 1.2e-143 513.1 254 100.0
Gohir.D12G054300 Gossypium hirsutum HOM05D018350 ORTHO05D020508 9.0e-134 480.3 254 93.3
Gorai.008G057200 Gossypium raimondii HOM05D018350 ORTHO05D020508 1.5e-133 479.6 254 93.3
Duzib138G0969 Durio zibethinus HOM05D018350 ORTHO05D020508 6.3e-71 271.6 282 56.7
Duzib138G0719 Durio zibethinus HOM05D018350 ORTHO05D020508 2.0e-69 266.5 278 56.8
Thecc.04G128400 Theobroma cacao HOM05D018350 ORTHO05D020508 1.3e-68 263.8 273 57.1
COL.COLO4_09379 Corchorus olitorius HOM05D018350 ORTHO05D020508 1.7e-44 183.7 231 49.8
Lj1C1007T18 Lonicera japonica HOM05D000307 ORTHO05D000166 8.7e-12 75.1 182 33.0
Lj1C1007T16 Lonicera japonica HOM05D000307 ORTHO05D000166 2.5e-11 73.6 180 33.3
Nitab4.5_0000167g0220 Nicotiana tabacum HOM05D000307 ORTHO05D000166 1.6e-10 70.9 142 35.2
Nitab4.5_0000365g0070 Nicotiana tabacum HOM05D000307 ORTHO05D000166 2.1e-10 70.5 140 35.7
Psat6g001960 Pisum sativum HOM05D000307 ORTHO05D000166 2.1e-10 70.5 146 34.2
Lj1g0022539 Lotus japonicus HOM05D008089 ORTHO05D000166 2.8e-10 70.1 151 32.5
Lj5g0004947 Lotus japonicus HOM05D000307 ORTHO05D000166 3.6e-10 69.7 154 33.8
Lj5g0023944 Lotus japonicus HOM05D000307 ORTHO05D000166 3.6e-10 69.7 154 33.8
Peaxi162Scf01013g00025 Petunia axillaris HOM05D000307 ORTHO05D000166 3.6e-10 69.7 173 32.9
CSS0013985 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 4.8e-10 69.3 134 35.1
Nitab4.5_0007355g0010 Nicotiana tabacum HOM05D000307 ORTHO05D000166 6.2e-10 68.9 175 32.6
MD02G1297800 Malus domestica HOM05D000307 ORTHO05D000166 1.1e-09 68.2 157 32.5
Dinv30482 Davidia involucrata HOM05D009853 ORTHO05D009969 1.8e-09 67.4 159 31.4
Hma1.2p1_0038F.1_g024040 Hydrangea macrophylla HOM05D000307 ORTHO05D000166 1.8e-09 67.4 275 26.2
Prupe.2G110900 Prunus persica HOM05D000307 ORTHO05D000166 2.4e-09 67.0 157 29.3
Prupe.3G148900 Prunus persica HOM05D000307 ORTHO05D000166 2.4e-09 67.0 157 30.6
CSS0008018 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.1e-09 66.6 147 32.7
Lsat_1_v5_gn_5_103840 Lactuca sativa HOM05D000307 ORTHO05D000166 4.0e-09 66.2 138 32.6
CsaV3_2G019470 Cucumis sativus L. HOM05D000307 ORTHO05D000166 6.9e-09 65.5 148 31.1
Medtr6g005440 Medicago truncatula HOM05D008089 ORTHO05D000166 6.9e-09 65.5 149 30.9
CSS0028822 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 9.0e-09 65.1 147 32.0
Peaxi162Scf00076g01010 Petunia axillaris HOM05D000307 ORTHO05D000166 9.0e-09 65.1 82 43.9
Potri.012G109900 Populus trichocarpa HOM05D000307 ORTHO05D000166 9.0e-09 65.1 237 29.5
Ca_13731_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 1.2e-08 64.7 252 29.0
CsaV3_3G020270 Cucumis sativus L. HOM05D000307 ORTHO05D000166 1.2e-08 64.7 140 35.7
CSS0019629 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.5e-08 64.3 147 32.0
Duzib264G0859 Durio zibethinus HOM05D000307 ORTHO05D000166 1.5e-08 64.3 79 44.3
Lalb_Chr05g0223381 Lupinus albus HOM05D000307 ORTHO05D000166 1.5e-08 64.3 176 33.0
Psat1g082000 Pisum sativum HOM05D000307 ORTHO05D000166 1.5e-08 64.3 187 31.6
MD17G1250500 Malus domestica HOM05D000307 ORTHO05D000166 2.0e-08 63.9 146 31.5
Actinidia09597 Actinidia chinensis HOM05D002537 ORTHO05D002751 2.6e-08 63.5 290 23.8
Cc09_g03630 Coffea canephora HOM05D000307 ORTHO05D000166 2.6e-08 63.5 82 37.8
FAN18G0656 Fragaria x ananassa HOM05D000307 ORTHO05D000166 2.6e-08 63.5 145 30.3
Glyma.19G045900 Glycine max HOM05D008089 ORTHO05D000166 2.6e-08 63.5 155 32.9
CSS0003566 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.4e-08 63.2 147 31.3
ClCG02G000370 Citrullus lanatus HOM05D000307 ORTHO05D000166 3.4e-08 63.2 154 29.2
MELO3C023227.2 Cucumis melo HOM05D000307 ORTHO05D000166 3.4e-08 63.2 146 30.8
Sopen11g010690 Solanum pennellii HOM05D000307 ORTHO05D000166 3.4e-08 63.2 75 44.0
Gohir.D03G048600 Gossypium hirsutum HOM05D000307 ORTHO05D000166 4.5e-08 62.8 154 29.9
SalBow7G2221 Salvia bowleyana HOM05D000307 ORTHO05D000166 4.5e-08 62.8 136 30.1
CSS0000924 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 5.8e-08 62.4 147 32.0
Gorai.003G049800 Gossypium raimondii HOM05D000307 ORTHO05D000166 5.8e-08 62.4 154 29.9
Solyc11g020320.1 Solanum lycopersicum HOM05D000307 ORTHO05D000166 5.8e-08 62.4 195 27.7
ECA234G3622 Erigeron canadensis HOM05D000307 ORTHO05D000166 7.6e-08 62.0 150 29.3
Lj5g0018268 Lotus japonicus HOM05D000307 ORTHO05D000166 7.6e-08 62.0 194 28.9
Aa31LG11G9940 Aethionema arabicum HOM05D000307 ORTHO05D000166 9.9e-08 61.6 117 30.8
Haze_14188 Corylus avellana HOM05D000307 ORTHO05D000166 9.9e-08 61.6 182 28.6
Dinv29104 Davidia involucrata HOM05D000307 ORTHO05D000166 9.9e-08 61.6 170 29.4
MD15G1430800 Malus domestica HOM05D000307 ORTHO05D013324 9.9e-08 61.6 102 42.2
Potri.002G255700 Populus trichocarpa HOM05D000307 ORTHO05D000166 9.9e-08 61.6 237 28.3
Thecc.01G021900 Theobroma cacao HOM05D000307 ORTHO05D000166 9.9e-08 61.6 275 24.4
FvH4_3g19300 Fragaria vesca HOM05D000307 ORTHO05D000166 1.3e-07 61.2 146 35.6
Sopen11g010600 Solanum pennellii HOM05D000307 ORTHO05D000166 1.3e-07 61.2 142 29.6
CSS0034462 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.7e-07 60.8 274 25.9
Carub.0006s2432 Capsella rubella HOM05D000307 ORTHO05D000166 1.7e-07 60.8 80 37.5
Prupe.3G306000 Prunus persica HOM05D000307 ORTHO05D000166 1.7e-07 60.8 162 32.7
RhsimUnG0101700 Rhododendron simsii HOM05D000307 ORTHO05D000166 1.7e-07 60.8 150 31.3
CSS0012311 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 2.2e-07 60.5 147 32.0
Carub.0194s0001 Capsella rubella HOM05D000307 ORTHO05D000166 2.2e-07 60.5 80 36.2
FAN16G0500 Fragaria x ananassa HOM05D000307 ORTHO05D000166 2.2e-07 60.5 146 34.9
FAN16G1963 Fragaria x ananassa HOM05D000307 ORTHO05D000166 2.2e-07 60.5 146 34.9
Thecc.01G119800 Theobroma cacao HOM05D000307 ORTHO05D000166 2.2e-07 60.5 152 28.9
Ciclev10030228m.g Citrus clementina HOM05D000307 ORTHO05D000166 2.9e-07 60.1 147 29.9
TPR.G1441 Trifolium pratense HOM05D000307 ORTHO05D000166 2.9e-07 60.1 215 29.8
AT5G26630 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 3.8e-07 59.7 80 36.2
Gohir.D11G185000 Gossypium hirsutum HOM05D000307 ORTHO05D000166 3.8e-07 59.7 117 35.0
Gorai.007G196600 Gossypium raimondii HOM05D000307 ORTHO05D000166 3.8e-07 59.7 117 35.0
PGR042G1162 Punica granatum HOM05D000307 ORTHO05D000166 3.8e-07 59.7 80 45.0
PGR042G2078 Punica granatum HOM05D000307 ORTHO05D000166 3.8e-07 59.7 149 29.5
PGSC0003DMG400027886 Solanum tuberosum HOM05D000307 ORTHO05D000166 3.8e-07 59.7 160 30.6
Actinidia17736 Actinidia chinensis HOM05D000307 ORTHO05D000166 4.9e-07 59.3 160 27.5
Medtr6g018920 Medicago truncatula HOM05D000307 ORTHO05D000166 4.9e-07 59.3 159 31.4
Oeu061769.1 Olea europaea HOM05D000307 ORTHO05D000166 4.9e-07 59.3 82 42.7
FAN20G0315 Fragaria x ananassa HOM05D000307 ORTHO05D000166 6.4e-07 58.9 161 31.7
Sed0006669 Sechium edule HOM05D000307 ORTHO05D000166 6.4e-07 58.9 147 29.9
TPR.G26403 Trifolium pratense HOM05D008089 ORTHO05D000166 6.4e-07 58.9 161 29.8
Zm00001eb243490 Zea mays HOM05D000307 ORTHO05D000166 6.4e-07 58.9 73 35.6
Duzib147G0158 Durio zibethinus HOM05D000307 ORTHO05D000166 8.4e-07 58.5 178 27.5
FvH4_5g21500 Fragaria vesca HOM05D000307 ORTHO05D000166 8.4e-07 58.5 127 30.7
CAN.G337.111 Capsicum annuum HOM05D000307 ORTHO05D000166 1.1e-06 58.2 194 27.8
Ciclev10027125m.g Citrus clementina HOM05D000307 ORTHO05D000166 1.1e-06 58.2 195 25.6
Glyma.19G047600 Glycine max HOM05D008089 ORTHO05D000166 1.1e-06 58.2 149 30.9
PGR042G1594 Punica granatum HOM05D000307 ORTHO05D000166 1.4e-06 57.8 81 39.5
RcHm_v2.0_Chr6g0296351 Rosa chinensis HOM05D000307 ORTHO05D000166 1.4e-06 57.8 165 30.3
arahy.Tifrunner.gnm1.ann1.29DMCM Arachis hypogaea HOM05D000307 ORTHO05D000166 1.9e-06 57.4 152 29.6
Carub.0006s2434 Capsella rubella HOM05D000307 ORTHO05D000166 1.9e-06 57.4 80 35.0
ClCG05G012100 Citrullus lanatus HOM05D000307 ORTHO05D000166 1.9e-06 57.4 151 33.1
COL.COLO4_31652 Corchorus olitorius HOM05D028763 ORTHO05D000166 1.9e-06 57.4 116 32.8
Migut.K00994 Erythranthe guttata HOM05D000042 ORTHO05D003657 1.9e-06 57.4 84 41.7
Eucgr.H02505 Eucalyptus grandis HOM05D000307 ORTHO05D000166 1.9e-06 57.4 131 27.5
PGR142G1732 Punica granatum HOM05D000042 ORTHO05D001427 1.9e-06 57.4 219 27.4
Thecc.05G106800 Theobroma cacao HOM05D000307 ORTHO05D000166 1.9e-06 57.4 73 37.0
EL10Ac6g13528 Beta vulgaris HOM05D000042 ORTHO05D003657 2.4e-06 57.0 87 35.6
Ciclev10012506m.g Citrus clementina HOM05D000307 ORTHO05D000166 2.4e-06 57.0 249 28.5
COL.COLO4_22397 Corchorus olitorius HOM05D000307 ORTHO05D000166 2.4e-06 57.0 152 28.3
Glyma.09G283800 Glycine max HOM05D000042 ORTHO05D000980 2.4e-06 57.0 83 45.8
Lsat_1_v5_gn_9_60601 Lactuca sativa HOM05D000307 ORTHO05D000166 2.4e-06 57.0 152 27.6
Lsat_1_v5_gn_9_65900 Lactuca sativa HOM05D000307 ORTHO05D000166 2.4e-06 57.0 150 28.7
Medtr1g114730 Medicago truncatula HOM05D000307 ORTHO05D000166 2.4e-06 57.0 84 35.7
Cfa007888 Carpinus fangiana HOM05D000307 ORTHO05D000166 3.2e-06 56.6 175 28.6
Dinv15101 Davidia involucrata HOM05D000307 ORTHO05D000166 3.2e-06 56.6 159 30.8
Eucgr.K02595 Eucalyptus grandis HOM05D000307 ORTHO05D000166 3.2e-06 56.6 85 36.5
FvH4_2g27520 Fragaria vesca HOM05D000307 ORTHO05D000166 3.2e-06 56.6 161 29.8
FAN15G0593 Fragaria x ananassa HOM05D000307 ORTHO05D000166 3.2e-06 56.6 161 29.8
FAN24G2406 Fragaria x ananassa HOM05D000307 ORTHO05D000166 3.2e-06 56.6 161 29.8
PSO675G0191 Papaver somniferum HOM05D000307 ORTHO05D000166 3.2e-06 56.6 161 30.4
Prupe.7G092900 Prunus persica HOM05D000307 ORTHO05D000166 3.2e-06 56.6 158 27.2
QL09p041547 Quercus lobata HOM05D000307 ORTHO05D000166 3.2e-06 56.6 172 28.5
TWI39G0715 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 3.2e-06 56.6 72 41.7
FAN27G3405 Fragaria x ananassa HOM05D000307 ORTHO05D000166 4.2e-06 56.2 142 31.7
Glyma.16G200700 Glycine max HOM05D000042 ORTHO05D000028 4.2e-06 56.2 85 38.8
Gohir.A11G177200 Gossypium hirsutum HOM05D000307 ORTHO05D000166 4.2e-06 56.2 102 36.3
HanXRQChr10g0294541 Helianthus annuus HOM05D000307 ORTHO05D000166 4.2e-06 56.2 151 27.8
Lalb_Chr08g0240501 Lupinus albus HOM05D000203 ORTHO05D000135 4.2e-06 56.2 90 34.4
Manes.15G161100 Manihot esculenta HOM05D028904 ORTHO05D000166 4.2e-06 56.2 159 33.3
PSO425G0033 Papaver somniferum HOM05D000042 ORTHO05D000980 4.2e-06 56.2 88 38.6
HPP92_001175 Vanilla planifolia HOM05D000307 ORTHO05D000166 4.2e-06 56.2 73 38.4
Aa31LG7G6470 Aethionema arabicum HOM05D000307 ORTHO05D000166 5.5e-06 55.8 79 36.7
Cpa.g.c26058.2 Carica papaya HOM05D000307 ORTHO05D000166 5.5e-06 55.8 74 40.5
CDE05G1214 Ceratophyllum demersum HOM05D000307 ORTHO05D000166 5.5e-06 55.8 73 46.6
Eucgr.F02794 Eucalyptus grandis HOM05D000307 ORTHO05D000166 5.5e-06 55.8 190 24.2
Gohir.A02G137901 Gossypium hirsutum HOM05D000307 ORTHO05D000166 5.5e-06 55.8 143 29.4
Lalb_Chr08g0233361 Lupinus albus HOM05D008089 ORTHO05D000166 5.5e-06 55.8 170 27.6
MBI07_g30199_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D020849 5.5e-06 55.8 88 39.8
PGR083G0337 Punica granatum HOM05D000307 ORTHO05D000166 5.5e-06 55.8 169 24.9
QL04p024253 Quercus lobata HOM05D000307 ORTHO05D000166 5.5e-06 55.8 73 42.5
QL06p031925 Quercus lobata HOM05D000307 ORTHO05D000166 5.5e-06 55.8 185 29.2
Sopen11g021030 Solanum pennellii HOM05D000307 ORTHO05D000166 5.5e-06 55.8 104 32.7
Thhalv10004893m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 7.1e-06 55.5 80 35.0
Glyma.08G095500 Glycine max HOM05D008089 ORTHO05D000166 7.1e-06 55.5 156 35.9
PGR004G1959 Punica granatum HOM05D000307 ORTHO05D000166 7.1e-06 55.5 157 28.7
TWI39G0880 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 7.1e-06 55.5 72 40.3
CDE02G2624 Ceratophyllum demersum HOM05D000307 ORTHO05D000166 9.3e-06 55.1 109 33.9
CDE11G0692 Ceratophyllum demersum HOM05D000307 ORTHO05D000166 9.3e-06 55.1 70 47.1
ECA246G0964 Erigeron canadensis HOM05D000307 ORTHO05D000166 9.3e-06 55.1 105 30.5
Migut.G00091 Erythranthe guttata HOM05D000307 ORTHO05D000166 9.3e-06 55.1 77 40.3
Eucgr.D01939 Eucalyptus grandis HOM05D000042 ORTHO05D000028 9.3e-06 55.1 122 32.8
FAN01G2052 Fragaria x ananassa HOM05D000042 ORTHO05D000028 9.3e-06 55.1 142 32.4
Hma1.2p1_0419F.1_g149370 Hydrangea macrophylla HOM05D000307 ORTHO05D000166 9.3e-06 55.1 122 28.7
Oeu046899.1 Olea europaea HOM05D000307 ORTHO05D000166 9.3e-06 55.1 82 41.5
Psat1g133560 Pisum sativum HOM05D008089 ORTHO05D026066 9.3e-06 55.1 103 33.0
Sabra02G0194300 Salix brachista HOM05D028904 ORTHO05D000166 9.3e-06 55.1 266 27.4
Sp2g21270 Schrenkiella parvula HOM05D000307 ORTHO05D000166 9.3e-06 55.1 80 35.0


User provided reference genes

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