Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.7e-166 588.6 297 100.0
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 4.4e-164 581.3 297 98.7
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 1.3e-163 579.7 297 98.3
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 5.4e-146 521.2 294 89.1
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.5e-143 513.1 295 87.8
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.4e-130 469.9 294 77.9
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 3.4e-124 448.7 295 74.9
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.1e-122 443.7 295 74.6
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.4e-122 443.4 295 75.3
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.4e-122 443.4 294 74.8
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 3.2e-122 442.2 290 76.6
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 9.2e-122 440.7 293 74.1
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 1.2e-121 440.3 295 75.3
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 3.5e-121 438.7 293 75.8
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 4.6e-121 438.3 293 74.1
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 1.5e-119 433.3 294 73.5
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 2.5e-119 432.6 293 72.7
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 4.3e-119 431.8 297 72.7
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 5.6e-119 431.4 294 70.1
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 1.2e-118 430.3 294 72.8
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 4.7e-118 428.3 294 73.1
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.8e-117 426.4 290 71.7
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 6.8e-117 424.5 294 72.4
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 8.9e-117 424.1 294 72.4
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.2e-116 423.7 294 70.1
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 1.7e-115 419.9 309 66.7
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 2.9e-115 419.1 293 69.6
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.4e-114 416.8 296 70.3
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 1.4e-114 416.8 295 70.2
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 9.2e-114 414.1 312 65.1
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 2.7e-113 412.5 294 67.0
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.0e-112 410.6 294 67.3
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.5e-111 406.8 293 68.3
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 3.3e-111 405.6 293 67.9
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 3.6e-110 402.1 295 67.1
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 8.1e-110 401.0 291 67.0
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.1e-109 400.6 321 66.0
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 5.2e-109 398.3 293 65.2
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 3.4e-108 395.6 257 79.0
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 4.4e-108 395.2 296 66.2
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 4.4e-108 395.2 296 66.2
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 4.4e-108 395.2 294 67.0
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 5.8e-108 394.8 293 66.9
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 1.3e-107 393.7 295 66.8
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.7e-107 393.3 296 65.9
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 4.2e-106 388.7 295 65.4
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 5.4e-106 388.3 293 67.2
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 9.2e-106 387.5 292 67.5
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 1.6e-105 386.7 293 64.5
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 4.6e-105 385.2 292 66.4
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 6.0e-105 384.8 297 67.0
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 6.0e-105 384.8 268 71.6
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 1.0e-104 384.0 298 66.4
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.0e-104 384.0 294 62.9
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 3.0e-104 382.5 297 64.3
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 1.1e-103 380.6 296 63.2
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.5e-103 380.2 312 62.2
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 1.5e-103 380.2 294 63.3
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.5e-103 380.2 298 63.4
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 9.6e-103 377.5 297 65.0
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 3.1e-101 372.5 295 62.7
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 3.1e-101 372.5 294 62.2
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 5.3e-101 371.7 298 65.1
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 2.0e-100 369.8 259 71.8
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 3.4e-100 369.0 297 61.3
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-99 367.1 276 65.9
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 3.2e-98 362.5 296 62.2
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 5.4e-98 361.7 361 53.7
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 4.6e-97 358.6 238 71.4
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 6.0e-97 358.2 294 60.2
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.3e-96 357.1 296 60.8
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 6.6e-96 354.8 333 58.3
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.6e-94 349.0 267 66.7
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 6.2e-94 348.2 291 59.5
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 7.6e-92 341.3 299 58.2
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 9.9e-92 340.9 292 60.3
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.2e-91 339.7 310 57.7
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.9e-91 339.3 266 64.3
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 2.1e-89 333.2 294 57.5
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 1.8e-88 330.1 265 61.1
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 1.9e-87 326.6 297 53.9
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 1.7e-83 313.5 229 67.2
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 2.5e-82 309.7 284 57.0
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 6.7e-80 301.6 209 67.9
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 6.7e-80 301.6 241 60.6
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 1.6e-78 297.0 202 71.3
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 6.2e-78 295.0 201 70.6
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 1.5e-76 290.4 227 66.1
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 2.5e-74 283.1 202 67.3
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 5.5e-74 282.0 258 56.6
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 3.1e-69 266.2 177 71.2
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.2e-68 264.2 294 45.6
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 4.5e-68 262.3 286 51.0
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 1.7e-67 260.4 303 43.9
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 8.5e-67 258.1 290 44.1
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 3.2e-66 256.1 295 45.1
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 3.2e-66 256.1 293 50.9
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 2.1e-65 253.4 200 62.0
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 3.1e-61 239.6 184 63.6
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 1.2e-60 237.7 208 57.7
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.4e-53 213.4 173 61.3
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 2.9e-51 206.5 185 57.8
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 1.9e-50 203.8 190 58.4
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 4.7e-49 199.1 213 48.4
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 2.8e-46 189.9 226 41.6
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.0e-40 171.4 137 64.2
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 4.0e-40 169.5 124 64.5
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.4e-37 161.0 95 86.3
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 3.1e-37 159.8 331 32.9
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 4.2e-34 149.4 96 80.2
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 5.5e-34 149.1 96 77.1
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 1.6e-33 147.5 97 74.2
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 8.0e-33 145.2 94 77.7
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 9.8e-31 138.3 145 51.7
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 4.5e-28 129.4 122 54.1
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 7.2e-26 122.1 90 68.9
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.6e-25 120.9 107 56.1
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 6.8e-24 115.5 100 56.0
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 1.5e-23 114.4 170 35.9
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 2.0e-23 114.0 124 51.6
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 2.4e-21 107.1 82 65.9
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 7.0e-21 105.5 93 55.9
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 4.5e-20 102.8 81 60.5
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 4.5e-20 102.8 92 52.2
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 4.5e-20 102.8 67 71.6
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 5.6e-18 95.9 68 69.1
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 5.8e-15 85.9 182 30.2
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 8.3e-14 82.0 81 50.6
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-13 81.3 55 70.9
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.0e-11 75.1 59 64.4
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 7.3e-10 68.9 52 61.5
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.6e-09 67.8 66 53.0


User provided reference genes

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