Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 5.5e-80 300.8 144 100.0
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 4.8e-76 287.7 144 95.1
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 2.1e-71 272.3 144 91.7
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 1.2e-50 203.4 144 63.9
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 8.3e-44 180.6 144 61.1
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 8.9e-38 160.6 148 58.1
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 4.9e-36 154.8 148 55.4
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 4.1e-35 151.8 151 49.0
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 6.0e-34 147.9 110 64.5
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 1.0e-33 147.1 148 50.7
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.1e-32 143.7 153 48.4
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 5.6e-32 141.4 149 48.3
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 1.2e-31 140.2 150 47.3
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 1.6e-31 139.8 149 45.0
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 2.8e-31 139.0 151 47.0
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 5.2e-30 134.8 147 49.0
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 6.8e-30 134.4 147 49.0
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 8.9e-30 134.0 150 50.7
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 1.2e-29 133.7 153 52.3
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.2e-29 133.7 146 50.0
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.5e-29 133.3 147 49.7
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 2.0e-29 132.9 147 48.3
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 3.4e-29 132.1 141 50.4
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.4e-29 131.7 147 51.7
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 3.8e-28 128.6 148 46.6
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 6.4e-28 127.9 145 47.6
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 8.4e-28 127.5 149 49.0
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 1.1e-27 127.1 161 47.8
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.9e-27 126.3 147 46.3
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 1.9e-27 126.3 145 44.8
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 3.2e-27 125.6 148 47.3
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 6.0e-26 121.3 158 43.0
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 6.0e-26 121.3 152 44.1
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.3e-25 120.2 149 41.6
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.3e-25 120.2 149 41.6
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 3.9e-25 118.6 111 51.4
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 1.9e-24 116.3 149 42.3
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 1.9e-24 116.3 155 41.9
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 2.1e-23 112.8 152 43.4
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 8.1e-23 110.9 143 41.3
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 2.4e-22 109.4 153 43.8
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 5.2e-22 108.2 162 42.0
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 1.2e-21 107.1 146 41.8
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 2.0e-21 106.3 160 38.1
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 2.6e-21 105.9 161 40.4
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 2.6e-21 105.9 148 44.6
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 1.1e-19 100.5 154 40.9
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 1.1e-19 100.5 152 43.4
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 1.1e-19 100.5 121 43.0
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 1.1e-19 100.5 146 41.1
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 1.4e-19 100.1 149 41.6
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 1.9e-19 99.8 148 40.5
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 3.2e-19 99.0 154 39.6
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 3.2e-19 99.0 155 41.9
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 5.4e-19 98.2 153 39.9
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 1.2e-18 97.1 153 40.5
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 1.2e-18 97.1 148 40.5
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 1.6e-18 96.7 145 38.6
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 1.6e-18 96.7 156 35.9
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 2.1e-18 96.3 148 40.5
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 4.6e-18 95.1 154 40.9
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 7.8e-18 94.4 144 42.4
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 1.3e-17 93.6 158 41.1
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 3.9e-17 92.0 157 40.8
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 3.9e-17 92.0 152 36.8
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 5.1e-17 91.7 155 40.0
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 1.1e-16 90.5 153 39.2
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 1.1e-16 90.5 153 39.2
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 1.5e-16 90.1 153 39.2
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 1.5e-16 90.1 153 39.2
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 1.5e-16 90.1 153 39.2
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 1.5e-16 90.1 148 39.2
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 1.9e-16 89.7 164 39.0
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 1.9e-16 89.7 113 46.0
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 2.5e-16 89.4 153 38.6
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 3.3e-16 89.0 158 38.6
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 3.3e-16 89.0 153 37.9
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 4.3e-16 88.6 160 40.6
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 4.3e-16 88.6 151 37.7
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 7.3e-16 87.8 61 65.6
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 9.6e-16 87.4 154 39.6
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 1.3e-15 87.0 94 47.9
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 1.3e-15 87.0 139 35.3
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 1.1e-14 84.0 164 36.6
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 1.8e-14 83.2 109 45.9
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 2.4e-14 82.8 160 36.9
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 4.0e-14 82.0 102 42.2
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 2.0e-13 79.7 178 35.4
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 7.6e-13 77.8 166 38.0
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 4.9e-12 75.1 132 41.7
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 1.4e-11 73.6 134 41.0
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 1.9e-11 73.2 111 37.8
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 5.4e-11 71.6 129 35.7
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 1.2e-10 70.5 72 50.0
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 2.1e-10 69.7 117 37.6
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 2.7e-10 69.3 158 33.5
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 4.6e-10 68.6 155 33.5
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 1.3e-09 67.0 67 52.2
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 3.9e-09 65.5 133 30.8
ATR0083G010 Amborella trichopoda HOM05D007454 ORTHO05D009382 1.1e-08 63.9 142 30.3
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.1e-08 63.9 118 33.1
ATR0260G001 Amborella trichopoda HOM05D007454 ORTHO05D009382 5.6e-08 61.6 114 34.2
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.6e-07 60.1 41 61.0


User provided reference genes

Program Settings