Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.8e-89 330.9 169 100.0
Gohir.A05G321213 Gossypium hirsutum HOM05D003509 ORTHO05D004205 1.4e-26 123.6 121 55.4
Gohir.A11G309050 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.1e-23 114.0 64 82.8
Gohir.D11G324400 Gossypium hirsutum HOM05D000056 ORTHO05D000019 4.7e-22 108.6 94 59.6
Gorai.007G354300 Gossypium raimondii HOM05D000056 ORTHO05D000019 1.8e-21 106.7 64 82.8
Gohir.D11G323900 Gossypium hirsutum HOM05D000056 ORTHO05D000019 2.6e-20 102.8 72 72.2
Gorai.007G354000 Gossypium raimondii HOM05D000056 ORTHO05D000019 2.6e-20 102.8 72 72.2
Gorai.007G355100 Gossypium raimondii HOM05D000056 ORTHO05D000019 2.6e-20 102.8 68 75.0
Gohir.D11G324150 Gossypium hirsutum HOM05D000056 ORTHO05D000019 7.5e-20 101.3 57 82.5
Gorai.007G354200 Gossypium raimondii HOM05D000056 ORTHO05D000019 2.2e-19 99.8 56 82.1
Gorai.007G354400 Gossypium raimondii HOM05D000056 ORTHO05D000019 2.2e-19 99.8 66 77.3
Gohir.D11G324175 Gossypium hirsutum HOM05D000056 ORTHO05D000019 2.9e-19 99.4 67 76.1
Gohir.A11G308500 Gossypium hirsutum HOM05D000056 ORTHO05D000019 4.9e-19 98.6 72 70.8
Gohir.A11G308800 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.4e-18 97.1 69 69.6
Gohir.D11G324100 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.9e-18 96.7 66 74.2
Gorai.007G354100 Gossypium raimondii HOM05D000056 ORTHO05D000019 1.9e-18 96.7 66 74.2
Gorai.007G355000 Gossypium raimondii HOM05D000056 ORTHO05D000019 3.2e-18 95.9 57 80.7
Gohir.D11G324375 Gossypium hirsutum HOM05D000056 ORTHO05D000019 5.4e-18 95.1 57 77.2
Gorai.007G354600 Gossypium raimondii HOM05D000056 ORTHO05D000019 5.4e-18 95.1 59 79.7
Gohir.D11G324300 Gossypium hirsutum HOM05D000056 ORTHO05D000019 9.2e-18 94.4 58 81.0
Gohir.A12G093750 Gossypium hirsutum HOM05D001545 ORTHO05D000019 1.2e-17 94.0 49 89.8
Gohir.A11G308600 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.7e-16 90.1 66 69.7
Gohir.A11G309000 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.7e-16 90.1 66 72.7
Gorai.007G355200 Gossypium raimondii HOM05D000056 ORTHO05D000019 1.7e-16 90.1 110 50.0
Thecc.05G141100 Theobroma cacao HOM05D000056 ORTHO05D000019 1.7e-16 90.1 72 62.5
Gohir.D11G324000 Gossypium hirsutum HOM05D000056 ORTHO05D000019 2.3e-16 89.7 66 69.7
Gohir.D11G324325 Gossypium hirsutum HOM05D000056 ORTHO05D000019 3.0e-16 89.4 59 76.3
Gohir.A11G308625 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.1e-15 87.4 88 55.7
Gohir.D11G324350 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.1e-15 87.4 110 48.2
Gohir.D11G324200 Gossypium hirsutum HOM05D000056 ORTHO05D000019 2.5e-15 86.3 67 73.1
Duzib093G1690 Durio zibethinus HOM05D000056 ORTHO05D000019 4.3e-15 85.5 72 59.7
Gohir.D11G324264 Gossypium hirsutum HOM05D000056 ORTHO05D000019 5.6e-15 85.1 66 69.7
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 7.3e-15 84.7 49 93.9
Gohir.D11G324216 Gossypium hirsutum HOM05D000056 ORTHO05D000019 7.3e-15 84.7 70 65.7
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 7.3e-15 84.7 49 93.9
Gohir.A11G308700 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.4e-13 80.5 73 60.3
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.8e-13 80.1 49 87.8
Gohir.A11G308675 Gossypium hirsutum HOM05D000056 ORTHO05D000019 3.1e-13 79.3 68 64.7
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 5.2e-13 78.6 49 85.7
COL.COLO4_33942 Corchorus olitorius HOM05D000056 ORTHO05D000019 6.8e-13 78.2 73 54.8
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 8.9e-13 77.8 49 83.7
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.6e-12 76.3 49 81.6
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 5.8e-12 75.1 46 84.8
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 7.5e-12 74.7 46 89.1
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 9.9e-12 74.3 47 83.0
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 9.9e-12 74.3 46 82.6
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.7e-11 73.6 46 87.0
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.7e-11 73.6 46 87.0
COL.COLO4_33943 Corchorus olitorius HOM05D000056 ORTHO05D000019 2.2e-11 73.2 73 54.8
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.2e-11 73.2 49 81.6
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 3.7e-11 72.4 51 84.3
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 4.9e-11 72.0 49 79.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 4.9e-11 72.0 46 82.6
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 6.4e-11 71.6 46 84.8
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 8.3e-11 71.2 47 76.6
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 8.3e-11 71.2 49 75.5
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.1e-10 70.9 49 77.6
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.1e-10 70.9 49 77.6
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 1.1e-10 70.9 49 77.6
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.1e-10 70.9 49 79.6
Gorai.007G354800 Gossypium raimondii HOM05D000056 ORTHO05D000019 1.4e-10 70.5 64 62.5
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.9e-10 70.1 49 75.5
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.9e-10 70.1 49 73.5
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.9e-10 70.1 78 53.8
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.4e-10 69.7 78 55.1
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 4.1e-10 68.9 47 76.6
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 4.1e-10 68.9 47 74.5
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 5.4e-10 68.6 49 73.5
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 5.4e-10 68.6 41 85.4
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 7.1e-10 68.2 49 75.5
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 9.2e-10 67.8 46 73.9
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 9.2e-10 67.8 44 77.3
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 9.2e-10 67.8 49 71.4
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 9.2e-10 67.8 43 81.4
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 9.2e-10 67.8 42 78.6
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 9.2e-10 67.8 44 79.5
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 9.2e-10 67.8 46 78.3
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.6e-09 67.0 47 70.2
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.6e-09 67.0 47 70.2
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.6e-09 67.0 49 73.5
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 1.6e-09 67.0 47 74.5
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.6e-09 67.0 46 73.9
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.6e-09 67.0 47 74.5
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 2.1e-09 66.6 49 73.5
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 2.7e-09 66.2 46 76.1
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 3.5e-09 65.9 44 72.7
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 4.6e-09 65.5 46 80.4
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 4.6e-09 65.5 48 70.8
Thecc.05G141000 Theobroma cacao HOM05D000056 ORTHO05D000019 4.6e-09 65.5 67 53.7
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 4.6e-09 65.5 44 81.8
Duzib128G0330 Durio zibethinus HOM05D000056 ORTHO05D000019 6.0e-09 65.1 68 47.1
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 6.0e-09 65.1 46 76.1
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 6.0e-09 65.1 47 72.3
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 6.0e-09 65.1 49 69.4
CANSAT80G0123 Cannabis sativa HOM05D000056 ORTHO05D000019 1.0e-08 64.3 59 57.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.0e-08 64.3 43 79.1
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.0e-08 64.3 49 69.4
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 1.3e-08 63.9 44 72.7
COL.COLO4_33944 Corchorus olitorius HOM05D000056 ORTHO05D000019 1.3e-08 63.9 65 47.7
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.3e-08 63.9 43 79.1
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.3e-08 63.9 49 65.3
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.3e-08 63.9 49 67.3
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.3e-08 63.9 49 67.3
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.7e-08 63.5 46 71.7
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.7e-08 63.5 44 75.0
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.7e-08 63.5 43 76.7
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.7e-08 63.5 67 55.2
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.3e-08 63.2 44 79.5
Duzib056G0003 Durio zibethinus HOM05D000056 ORTHO05D000019 2.3e-08 63.2 55 58.2
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.3e-08 63.2 46 67.4
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.3e-08 63.2 46 67.4
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.0e-08 62.8 46 67.4
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 3.0e-08 62.8 49 67.3
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 3.9e-08 62.4 46 71.7
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.1e-08 62.0 47 63.8
CANSAT80G1272 Cannabis sativa HOM05D000056 ORTHO05D000019 5.1e-08 62.0 60 58.3
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.1e-08 62.0 46 69.6
Dinv01530 Davidia involucrata HOM05D000056 ORTHO05D000019 5.1e-08 62.0 130 36.9
Dinv08475 Davidia involucrata HOM05D000056 ORTHO05D000019 5.1e-08 62.0 130 36.9
Gohir.A11G308566 Gossypium hirsutum HOM05D000056 ORTHO05D000019 5.1e-08 62.0 61 55.7
Thecc.05G140000 Theobroma cacao HOM05D000056 ORTHO05D000019 5.1e-08 62.0 55 60.0
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 6.6e-08 61.6 46 67.4
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 6.6e-08 61.6 46 65.2
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 6.6e-08 61.6 43 76.7
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 8.6e-08 61.2 46 65.2
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 8.6e-08 61.2 46 67.4
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 8.6e-08 61.2 66 54.5
Duzib128G0681 Durio zibethinus HOM05D000056 ORTHO05D000019 1.1e-07 60.8 69 43.5
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-07 60.8 47 70.2
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.1e-07 60.8 49 63.3
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.5e-07 60.5 46 69.6
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.5e-07 60.5 73 53.4
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.5e-07 60.5 73 53.4
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.5e-07 60.5 43 76.7
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.9e-07 60.1 49 65.3
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.9e-07 60.1 49 69.4
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 2.5e-07 59.7 49 69.4
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 2.5e-07 59.7 49 69.4
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 3.3e-07 59.3 49 69.4
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 3.3e-07 59.3 49 69.4
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 3.3e-07 59.3 49 65.3
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 3.3e-07 59.3 46 65.2
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.3e-07 59.3 49 67.3
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 4.3e-07 58.9 43 65.1
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 4.3e-07 58.9 44 72.7
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 5.6e-07 58.5 46 63.0
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 5.6e-07 58.5 46 63.0
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 5.6e-07 58.5 46 63.0
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 5.6e-07 58.5 46 65.2
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 5.6e-07 58.5 66 53.0
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.3e-07 58.2 49 65.3
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 7.3e-07 58.2 46 60.9
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 7.3e-07 58.2 46 60.9
Thecc.05G140100 Theobroma cacao HOM05D000056 ORTHO05D000019 7.3e-07 58.2 55 56.4
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 7.3e-07 58.2 49 63.3
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 9.5e-07 57.8 43 62.8
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.2e-06 57.4 43 62.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 1.2e-06 57.4 75 44.0
Dinv08478 Davidia involucrata HOM05D000056 ORTHO05D000019 1.6e-06 57.0 63 49.2
CiPaw.03G078700 Carya illinoinensis HOM05D000056 ORTHO05D000019 2.1e-06 56.6 83 37.3
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 2.8e-06 56.2 53 60.4
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 2.8e-06 56.2 53 60.4
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 2.8e-06 56.2 30 90.0
QL07p007277 Quercus lobata HOM05D000056 ORTHO05D000019 3.6e-06 55.8 67 46.3
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 4.7e-06 55.5 49 57.1
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.7e-06 55.5 45 60.0
CiPaw.09G045000 Carya illinoinensis HOM05D000056 ORTHO05D000019 8.1e-06 54.7 64 45.3
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 8.1e-06 54.7 33 78.8
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 8.1e-06 54.7 43 65.1


User provided reference genes

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